{"id":"https://openalex.org/W4390347126","doi":"https://doi.org/10.3390/a17010013","title":"Machine Learning Model for Multiomics Biomarkers Identification for Menopause Status in Breast Cancer","display_name":"Machine Learning Model for Multiomics Biomarkers Identification for Menopause Status in Breast Cancer","publication_year":2023,"publication_date":"2023-12-28","ids":{"openalex":"https://openalex.org/W4390347126","doi":"https://doi.org/10.3390/a17010013"},"language":"en","primary_location":{"id":"doi:10.3390/a17010013","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a17010013","pdf_url":"https://www.mdpi.com/1999-4893/17/1/13/pdf?version=1703755932","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1999-4893/17/1/13/pdf?version=1703755932","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047952727","display_name":"Firas Alghanim","orcid":"https://orcid.org/0000-0001-7909-537X"},"institutions":[{"id":"https://openalex.org/I158749337","display_name":"Princess Sumaya University for Technology","ror":"https://ror.org/01jy46q10","country_code":"JO","type":"education","lineage":["https://openalex.org/I158749337"]}],"countries":["JO"],"is_corresponding":false,"raw_author_name":"Firas Alghanim","raw_affiliation_strings":["King Hussein School of Computing Sciences, Princess Sumaya University for Technology, Al-Jubaiha, Amman P.O. Box 1438, Jordan"],"affiliations":[{"raw_affiliation_string":"King Hussein School of Computing Sciences, Princess Sumaya University for Technology, Al-Jubaiha, Amman P.O. Box 1438, Jordan","institution_ids":["https://openalex.org/I158749337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093603617","display_name":"Ibrahim Al-Hurani","orcid":null},"institutions":[{"id":"https://openalex.org/I72541430","display_name":"Lakehead University","ror":"https://ror.org/023p7mg82","country_code":"CA","type":"education","lineage":["https://openalex.org/I72541430"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ibrahim Al-Hurani","raw_affiliation_strings":["Department of Electrical Engineering, Lakehead University, Thunder Bay, ON P7B 5E1, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, Lakehead University, Thunder Bay, ON P7B 5E1, Canada","institution_ids":["https://openalex.org/I72541430"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031221516","display_name":"Hazem Qattous","orcid":null},"institutions":[{"id":"https://openalex.org/I158749337","display_name":"Princess Sumaya University for Technology","ror":"https://ror.org/01jy46q10","country_code":"JO","type":"education","lineage":["https://openalex.org/I158749337"]}],"countries":["JO"],"is_corresponding":false,"raw_author_name":"Hazem Qattous","raw_affiliation_strings":["King Hussein School of Computing Sciences, Princess Sumaya University for Technology, Al-Jubaiha, Amman P.O. Box 1438, Jordan"],"affiliations":[{"raw_affiliation_string":"King Hussein School of Computing Sciences, Princess Sumaya University for Technology, Al-Jubaiha, Amman P.O. Box 1438, Jordan","institution_ids":["https://openalex.org/I158749337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024476272","display_name":"Abdullah Al-Refai","orcid":"https://orcid.org/0000-0002-1557-3982"},"institutions":[{"id":"https://openalex.org/I158749337","display_name":"Princess Sumaya University for Technology","ror":"https://ror.org/01jy46q10","country_code":"JO","type":"education","lineage":["https://openalex.org/I158749337"]}],"countries":["JO"],"is_corresponding":false,"raw_author_name":"Abdullah Al-Refai","raw_affiliation_strings":["King Hussein School of Computing Sciences, Princess Sumaya University for Technology, Al-Jubaiha, Amman P.O. Box 1438, Jordan"],"affiliations":[{"raw_affiliation_string":"King Hussein School of Computing Sciences, Princess Sumaya University for Technology, Al-Jubaiha, Amman P.O. Box 1438, Jordan","institution_ids":["https://openalex.org/I158749337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069349643","display_name":"Osamah Batiha","orcid":"https://orcid.org/0000-0003-2415-324X"},"institutions":[{"id":"https://openalex.org/I156983542","display_name":"Jordan University of Science and Technology","ror":"https://ror.org/03y8mtb59","country_code":"JO","type":"education","lineage":["https://openalex.org/I156983542"]}],"countries":["JO"],"is_corresponding":false,"raw_author_name":"Osamah Batiha","raw_affiliation_strings":["Department of Biotechnology and Genetic Engineering, Jordan University of Science and Technology, Irbid P.O. Box 3030, Jordan"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Genetic Engineering, Jordan University of Science and Technology, Irbid P.O. Box 3030, Jordan","institution_ids":["https://openalex.org/I156983542"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009739727","display_name":"Abedalrhman Alkhateeb","orcid":"https://orcid.org/0000-0002-1751-7570"},"institutions":[{"id":"https://openalex.org/I72541430","display_name":"Lakehead University","ror":"https://ror.org/023p7mg82","country_code":"CA","type":"education","lineage":["https://openalex.org/I72541430"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Abedalrhman Alkhateeb","raw_affiliation_strings":["Computer Science Department, Lakehead University, Thunder Bay, ON P7B 5E1, Canada"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, Lakehead University, Thunder Bay, ON P7B 5E1, Canada","institution_ids":["https://openalex.org/I72541430"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088692076","display_name":"Salama Ikki","orcid":"https://orcid.org/0000-0003-3868-4447"},"institutions":[{"id":"https://openalex.org/I72541430","display_name":"Lakehead University","ror":"https://ror.org/023p7mg82","country_code":"CA","type":"education","lineage":["https://openalex.org/I72541430"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Salama Ikki","raw_affiliation_strings":["Department of Electrical Engineering, Lakehead University, Thunder Bay, ON P7B 5E1, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, Lakehead University, Thunder Bay, ON P7B 5E1, Canada","institution_ids":["https://openalex.org/I72541430"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5009739727"],"corresponding_institution_ids":["https://openalex.org/I72541430"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":1.8472,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.85914325,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"17","issue":"1","first_page":"13","last_page":"13"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9811000227928162,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.5875105261802673},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5544339418411255},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.394100546836853},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.35330790281295776},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3451061248779297},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.30661481618881226},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.1833057701587677}],"concepts":[{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.5875105261802673},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5544339418411255},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.394100546836853},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.35330790281295776},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3451061248779297},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.30661481618881226},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.1833057701587677}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3390/a17010013","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a17010013","pdf_url":"https://www.mdpi.com/1999-4893/17/1/13/pdf?version=1703755932","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:23e8475d049046f8a923efa4454fc4a0","is_oa":true,"landing_page_url":"https://doaj.org/article/23e8475d049046f8a923efa4454fc4a0","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms, Vol 17, Iss 1, p 13 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/a17010013","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a17010013","pdf_url":"https://www.mdpi.com/1999-4893/17/1/13/pdf?version=1703755932","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.7699999809265137,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4390347126.pdf"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1546715325","https://openalex.org/W1562776506","https://openalex.org/W1791425304","https://openalex.org/W1908864745","https://openalex.org/W1967866999","https://openalex.org/W1972228847","https://openalex.org/W2009720434","https://openalex.org/W2031131661","https://openalex.org/W2046983705","https://openalex.org/W2084930007","https://openalex.org/W2089468765","https://openalex.org/W2102685625","https://openalex.org/W2104933073","https://openalex.org/W2141224543","https://openalex.org/W2144428030","https://openalex.org/W2148143831","https://openalex.org/W2156692042","https://openalex.org/W2187089797","https://openalex.org/W2295598076","https://openalex.org/W2505312721","https://openalex.org/W2596336215","https://openalex.org/W2607923953","https://openalex.org/W2808845633","https://openalex.org/W2911964244","https://openalex.org/W2997022986","https://openalex.org/W3083113686","https://openalex.org/W3096828292","https://openalex.org/W3111307227","https://openalex.org/W3128646645","https://openalex.org/W4210638113","https://openalex.org/W4212958784","https://openalex.org/W4239510810","https://openalex.org/W4293241248","https://openalex.org/W4311760380","https://openalex.org/W4377012873","https://openalex.org/W4389331847","https://openalex.org/W6632974064","https://openalex.org/W6682141768","https://openalex.org/W6756408089","https://openalex.org/W6786543096"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4286629047","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4313488044","https://openalex.org/W3209574120","https://openalex.org/W4312192474"],"abstract_inverted_index":{"Identifying":[0],"menopause-related":[1],"breast":[2,36,156],"cancer":[3,37],"biomarkers":[4,32,196],"is":[5,90,120,133],"crucial":[6],"for":[7,29,75,188],"enhancing":[8],"diagnosis,":[9],"prognosis,":[10],"and":[11,40,50,62,68,78,109,125,155,163,193,201],"personalized":[12],"treatment":[13],"at":[14],"that":[15],"stage":[16],"of":[17,183],"the":[18,94,104,137,150,167,177,181,184,190,194,206],"patient\u2019s":[19],"life.":[20],"In":[21],"this":[22],"paper,":[23],"we":[24],"present":[25],"a":[26,56,115,130,142],"comprehensive":[27],"framework":[28,71,146],"extracting":[30],"multiomics":[31,139],"specifically":[33],"related":[34],"to":[35,92,121,148],"incidence":[38],"before":[39],"after":[41],"menopause.":[42],"Our":[43],"approach":[44],"integrates":[45],"DNA":[46,105],"methylation,":[47,106],"gene":[48,107,186],"expression,":[49,108],"copy":[51,110],"number":[52,111],"alteration":[53,112],"data":[54,60,76,80,113,140],"using":[55],"systematic":[57],"pipeline":[58],"encompassing":[59],"preprocessing":[61,77],"handling":[63],"class":[64,95],"imbalance,":[65],"dimensionality":[66],"reduction,":[67],"classification.":[69],"The":[70,82,118,145,169,203],"starts":[72],"with":[73],"MutSigCV":[74],"ensuring":[79],"quality.":[81],"Synthetic":[83],"Minority":[84],"Over-sampling":[85],"Technique":[86],"(SMOTE)":[87],"up-sampling":[88],"technique":[89],"applied":[91],"address":[93],"imbalance":[96],"representation.":[97,144],"Then,":[98],"Principal":[99],"Component":[100],"Analysis":[101],"(PCA)":[102],"transforms":[103],"into":[114,141],"latent":[116],"space.":[117],"purpose":[119],"discard":[122],"irrelevant":[123],"variations":[124],"extract":[126],"relevant":[127],"information.":[128],"Finally,":[129],"classification":[131],"model":[132,173],"built":[134],"based":[135,175],"on":[136,176],"transformed":[138],"unified":[143],"contributes":[147],"understanding":[149],"complex":[151],"interplay":[152],"between":[153],"menopause":[154,191],"cancer,":[157],"thereby":[158],"revealing":[159],"more":[160],"precise":[161],"diagnostic":[162],"therapeutic":[164],"strategies":[165],"in":[166],"future.":[168],"explainable":[170],"artificial":[171],"intelligence":[172],"Shapley":[174],"XGBoost":[178],"regressor":[179],"showed":[180],"power":[182],"selected":[185],"expressions":[187],"predicting":[189],"status,":[192],"potential":[195],"included":[197],"RUNX1,":[198],"PTEN,":[199],"MAP3K1,":[200],"CDH1.":[202],"literature":[204],"confirmed":[205],"findings.":[207]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":7}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
