{"id":"https://openalex.org/W2603542455","doi":"https://doi.org/10.3390/systems5020030","title":"Reaction Networks as a Language for Systemic Modeling: On the Study of Structural Changes","display_name":"Reaction Networks as a Language for Systemic Modeling: On the Study of Structural Changes","publication_year":2017,"publication_date":"2017-03-31","ids":{"openalex":"https://openalex.org/W2603542455","doi":"https://doi.org/10.3390/systems5020030","mag":"2603542455"},"language":"en","primary_location":{"id":"doi:10.3390/systems5020030","is_oa":true,"landing_page_url":"https://doi.org/10.3390/systems5020030","pdf_url":"https://www.mdpi.com/2079-8954/5/2/30/pdf?version=1491478330","source":{"id":"https://openalex.org/S4210219410","display_name":"Systems","issn_l":"2079-8954","issn":["2079-8954"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2079-8954/5/2/30/pdf?version=1491478330","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026723884","display_name":"Tom\u00e1s Veloz","orcid":"https://orcid.org/0000-0003-3014-8340"},"institutions":[{"id":"https://openalex.org/I4210145958","display_name":"Instituto de Filosof\u00eda y Ciencias de la Complejidad","ror":"https://ror.org/0447jv934","country_code":"CL","type":"facility","lineage":["https://openalex.org/I4210145958"]}],"countries":["CL"],"is_corresponding":true,"raw_author_name":"Tomas Veloz","raw_affiliation_strings":["Center Leo Apostel, Brussels Free University, 1050 Brussels, Belgium;","Insituto de Filosof\u00eda y Ciencias de la Complejidad, Los Alerces 3024, \u00d1u\u00f1oa, Chile;"],"raw_orcid":"https://orcid.org/0000-0003-3014-8340","affiliations":[{"raw_affiliation_string":"Center Leo Apostel, Brussels Free University, 1050 Brussels, Belgium;","institution_ids":[]},{"raw_affiliation_string":"Insituto de Filosof\u00eda y Ciencias de la Complejidad, Los Alerces 3024, \u00d1u\u00f1oa, Chile;","institution_ids":["https://openalex.org/I4210145958"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083592437","display_name":"Pablo Razeto\u2010Barry","orcid":null},"institutions":[{"id":"https://openalex.org/I4210145958","display_name":"Instituto de Filosof\u00eda y Ciencias de la Complejidad","ror":"https://ror.org/0447jv934","country_code":"CL","type":"facility","lineage":["https://openalex.org/I4210145958"]},{"id":"https://openalex.org/I911713783","display_name":"Universidad Diego Portales","ror":"https://ror.org/03gtdcg60","country_code":"CL","type":"education","lineage":["https://openalex.org/I911713783"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Pablo Razeto-Barry","raw_affiliation_strings":["Insituto de Filosof\u00eda y Ciencias de la Complejidad, Los Alerces 3024, \u00d1u\u00f1oa, Chile;","Vicerrector\u00eda Acadm\u00b4 ica, Universidad Diego Portales, Manuel Rodrg\u00b4uez Sur 415, Santiago, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Insituto de Filosof\u00eda y Ciencias de la Complejidad, Los Alerces 3024, \u00d1u\u00f1oa, Chile;","institution_ids":["https://openalex.org/I4210145958"]},{"raw_affiliation_string":"Vicerrector\u00eda Acadm\u00b4 ica, Universidad Diego Portales, Manuel Rodrg\u00b4uez Sur 415, Santiago, Chile","institution_ids":["https://openalex.org/I911713783"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5026723884"],"corresponding_institution_ids":["https://openalex.org/I4210145958"],"apc_list":{"value":1600,"currency":"CHF","value_usd":1732},"apc_paid":{"value":1600,"currency":"CHF","value_usd":1732},"fwci":0.2246,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.55208984,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"5","issue":"2","first_page":"30","last_page":"30"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11195","display_name":"Simulation Techniques and Applications","score":0.978600025177002,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9700000286102295,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5917750597000122},{"id":"https://openalex.org/keywords/observable","display_name":"Observable","score":0.5870389938354492},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5388301610946655},{"id":"https://openalex.org/keywords/network-structure","display_name":"Network structure","score":0.5097965598106384},{"id":"https://openalex.org/keywords/partition","display_name":"Partition (number theory)","score":0.47524356842041016},{"id":"https://openalex.org/keywords/structural-system","display_name":"Structural system","score":0.46869850158691406},{"id":"https://openalex.org/keywords/decomposition","display_name":"Decomposition","score":0.45262548327445984},{"id":"https://openalex.org/keywords/complex-system","display_name":"Complex system","score":0.4136888086795807},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3779950737953186},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22772672772407532},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21255910396575928},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.12045741081237793},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11778926849365234},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.11108186841011047}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5917750597000122},{"id":"https://openalex.org/C32848918","wikidata":"https://www.wikidata.org/wiki/Q845789","display_name":"Observable","level":2,"score":0.5870389938354492},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5388301610946655},{"id":"https://openalex.org/C2988224531","wikidata":"https://www.wikidata.org/wiki/Q20830730","display_name":"Network structure","level":2,"score":0.5097965598106384},{"id":"https://openalex.org/C42812","wikidata":"https://www.wikidata.org/wiki/Q1082910","display_name":"Partition (number theory)","level":2,"score":0.47524356842041016},{"id":"https://openalex.org/C88282795","wikidata":"https://www.wikidata.org/wiki/Q2448108","display_name":"Structural system","level":2,"score":0.46869850158691406},{"id":"https://openalex.org/C124681953","wikidata":"https://www.wikidata.org/wiki/Q339062","display_name":"Decomposition","level":2,"score":0.45262548327445984},{"id":"https://openalex.org/C47822265","wikidata":"https://www.wikidata.org/wiki/Q854457","display_name":"Complex system","level":2,"score":0.4136888086795807},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3779950737953186},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22772672772407532},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21255910396575928},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.12045741081237793},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11778926849365234},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.11108186841011047},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3390/systems5020030","is_oa":true,"landing_page_url":"https://doi.org/10.3390/systems5020030","pdf_url":"https://www.mdpi.com/2079-8954/5/2/30/pdf?version=1491478330","source":{"id":"https://openalex.org/S4210219410","display_name":"Systems","issn_l":"2079-8954","issn":["2079-8954"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Systems","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:8b15edcd631749ee85e5fef31dd25d09","is_oa":true,"landing_page_url":"https://doaj.org/article/8b15edcd631749ee85e5fef31dd25d09","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Systems, Vol 5, Iss 2, p 30 (2017)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/2079-8954/5/2/30/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/systems5020030","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Systems; Volume 5; Issue 2; Pages: 30","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/systems5020030","is_oa":true,"landing_page_url":"https://doi.org/10.3390/systems5020030","pdf_url":"https://www.mdpi.com/2079-8954/5/2/30/pdf?version=1491478330","source":{"id":"https://openalex.org/S4210219410","display_name":"Systems","issn_l":"2079-8954","issn":["2079-8954"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Systems","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3803862860","display_name":null,"funder_award_id":"3170122","funder_id":"https://openalex.org/F4320335542","funder_display_name":"Fondo Nacional de Desarrollo Cient\u00edfico, Tecnol\u00f3gico y de Innovaci\u00f3n Tecnol\u00f3gica"},{"id":"https://openalex.org/G386158119","display_name":null,"funder_award_id":"1150229","funder_id":"https://openalex.org/F4320335542","funder_display_name":"Fondo Nacional de Desarrollo Cient\u00edfico, Tecnol\u00f3gico y de Innovaci\u00f3n Tecnol\u00f3gica"}],"funders":[{"id":"https://openalex.org/F4320335542","display_name":"Fondo Nacional de Desarrollo Cient\u00edfico, Tecnol\u00f3gico y de Innovaci\u00f3n Tecnol\u00f3gica","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2603542455.pdf","grobid_xml":"https://content.openalex.org/works/W2603542455.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1988401808","https://openalex.org/W2021767817","https://openalex.org/W2102089979","https://openalex.org/W2122902581","https://openalex.org/W2132300843","https://openalex.org/W2152993703","https://openalex.org/W2509221394","https://openalex.org/W2586827018","https://openalex.org/W2587129831","https://openalex.org/W3102310679","https://openalex.org/W6791831361"],"related_works":["https://openalex.org/W1994680671","https://openalex.org/W2000283393","https://openalex.org/W2002320543","https://openalex.org/W2040927204","https://openalex.org/W2061947244","https://openalex.org/W2150232912","https://openalex.org/W2054940838","https://openalex.org/W3106170641","https://openalex.org/W4321855183","https://openalex.org/W2952513607"],"abstract_inverted_index":{"Reaction":[0],"Networks":[1],"have":[2],"been":[3],"recently":[4],"proposed":[5],"as":[6,189],"a":[7,52,63,159,181,186,190,215],"framework":[8],"for":[9,202],"systems":[10,32,69,171],"modeling":[11,68],"due":[12],"to":[13,16,26,36,57,88,105,128,167,184],"its":[14,122],"capability":[15],"describe":[17,146],"many":[18],"entities":[19],"interacting":[20],"in":[21,94,99,111,134,139,147,158,169],"contextual":[22],"ways":[23],"and":[24,162,196],"leading":[25],"the":[27,89,112,115,119,135,149,170,205,208],"emergence":[28],"of":[29,80,92,114,121,152,192,207],"meta-structures.":[30],"Since":[31],"can":[33,156],"be":[34],"subjected":[35],"structural":[37,60,81,130,153,216],"changes":[38,61,109,133,154,165,168],"that":[39,75,155,211],"not":[40,110],"only":[41],"alter":[42],"their":[43,48],"inner":[44],"functioning,":[45],"but":[46,117],"also":[47],"underlying":[49],"ontological":[50],"features,":[51],"crucial":[53],"issue":[54],"is":[55],"how":[56,163,198],"address":[58],"these":[59,164],"within":[62,173],"formal":[64],"representational":[65],"framework.":[66],"When":[67],"using":[70],"reaction":[71,160,175,187,209],"networks,":[72],"we":[73,145,179],"find":[74],"three":[76,150],"fundamentally":[77],"different":[78],"types":[79,151],"change":[82,98],"are":[83,212],"possible.":[84],"The":[85,102,125],"first":[86],"corresponds":[87,104,127],"usual":[90],"notion":[91],"perturbation":[93],"dynamical":[95],"systems,":[96],"i.e.,":[97,108,132],"system\u2019s":[100],"state.":[101],"second":[103],"behavioral":[106,123],"changes,":[107,131],"state":[113],"system":[116],"on":[118],"properties":[120],"rules.":[124],"third":[126],"radical":[129],"state-set":[136],"structure":[137],"and/or":[138],"reaction-set":[140],"structure.":[141],"In":[142,177],"this":[143,174],"article,":[144],"detail":[148],"occur":[157],"network,":[161],"relate":[166],"observable":[172],"network.":[176],"particular,":[178],"develop":[180],"decomposition":[182,200],"theorem":[183],"partition":[185],"network":[188,210],"collection":[191],"dynamically":[193],"independent":[194],"modules,":[195],"show":[197],"such":[199],"allows":[201],"precisely":[203],"identifying":[204],"parts":[206],"affected":[213],"by":[214],"change.":[217]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2019,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
