{"id":"https://openalex.org/W4399968468","doi":"https://doi.org/10.3390/sym16070790","title":"Novel Algorithm for Comparing Phylogenetic Trees with Different but Overlapping Taxa","display_name":"Novel Algorithm for Comparing Phylogenetic Trees with Different but Overlapping Taxa","publication_year":2024,"publication_date":"2024-06-24","ids":{"openalex":"https://openalex.org/W4399968468","doi":"https://doi.org/10.3390/sym16070790"},"language":"en","primary_location":{"id":"doi:10.3390/sym16070790","is_oa":true,"landing_page_url":"https://doi.org/10.3390/sym16070790","pdf_url":"https://www.mdpi.com/2073-8994/16/7/790/pdf?version=1719214657","source":{"id":"https://openalex.org/S190787756","display_name":"Symmetry","issn_l":"2073-8994","issn":["2073-8994"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Symmetry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2073-8994/16/7/790/pdf?version=1719214657","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063876203","display_name":"Aleksandr Koshkarov","orcid":"https://orcid.org/0000-0002-3630-2911"},"institutions":[{"id":"https://openalex.org/I135117807","display_name":"Universit\u00e9 de Sherbrooke","ror":"https://ror.org/00kybxq39","country_code":"CA","type":"education","lineage":["https://openalex.org/I135117807"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Aleksandr Koshkarov","raw_affiliation_strings":["Department of Computer Science, University of Sherbrooke, Sherbrooke, QC J1K 2R1, Canada"],"raw_orcid":"https://orcid.org/0000-0002-3630-2911","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Sherbrooke, Sherbrooke, QC J1K 2R1, Canada","institution_ids":["https://openalex.org/I135117807"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083583971","display_name":"Nadia Tahiri","orcid":"https://orcid.org/0000-0002-1818-208X"},"institutions":[{"id":"https://openalex.org/I135117807","display_name":"Universit\u00e9 de Sherbrooke","ror":"https://ror.org/00kybxq39","country_code":"CA","type":"education","lineage":["https://openalex.org/I135117807"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Nadia Tahiri","raw_affiliation_strings":["Department of Computer Science, University of Sherbrooke, Sherbrooke, QC J1K 2R1, Canada"],"raw_orcid":"https://orcid.org/0000-0002-1818-208X","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Sherbrooke, Sherbrooke, QC J1K 2R1, Canada","institution_ids":["https://openalex.org/I135117807"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5083583971"],"corresponding_institution_ids":["https://openalex.org/I135117807"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":0.6017,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.66758494,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"16","issue":"7","first_page":"790","last_page":"790"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9836999773979187,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.9069072008132935},{"id":"https://openalex.org/keywords/tree-rearrangement","display_name":"Tree rearrangement","score":0.7936859130859375},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.6909257769584656},{"id":"https://openalex.org/keywords/computational-phylogenetics","display_name":"Computational phylogenetics","score":0.6820532083511353},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6399217844009399},{"id":"https://openalex.org/keywords/taxon","display_name":"Taxon","score":0.6084225177764893},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.5584828853607178},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.528542697429657},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5080833435058594},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.4547500014305115},{"id":"https://openalex.org/keywords/weight-balanced-tree","display_name":"Weight-balanced tree","score":0.4120270907878876},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.3812198042869568},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3626371920108795},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.34485292434692383},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24955010414123535},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23309427499771118},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.1336458921432495},{"id":"https://openalex.org/keywords/binary-tree","display_name":"Binary tree","score":0.0731130838394165},{"id":"https://openalex.org/keywords/binary-search-tree","display_name":"Binary search tree","score":0.06557139754295349}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.9069072008132935},{"id":"https://openalex.org/C53208351","wikidata":"https://www.wikidata.org/wiki/Q7837630","display_name":"Tree rearrangement","level":4,"score":0.7936859130859375},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.6909257769584656},{"id":"https://openalex.org/C41168302","wikidata":"https://www.wikidata.org/wiki/Q3772859","display_name":"Computational phylogenetics","level":5,"score":0.6820532083511353},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6399217844009399},{"id":"https://openalex.org/C71640776","wikidata":"https://www.wikidata.org/wiki/Q16521","display_name":"Taxon","level":2,"score":0.6084225177764893},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.5584828853607178},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.528542697429657},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5080833435058594},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.4547500014305115},{"id":"https://openalex.org/C57900377","wikidata":"https://www.wikidata.org/wiki/Q7979855","display_name":"Weight-balanced tree","level":4,"score":0.4120270907878876},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.3812198042869568},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3626371920108795},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.34485292434692383},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24955010414123535},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23309427499771118},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.1336458921432495},{"id":"https://openalex.org/C197855036","wikidata":"https://www.wikidata.org/wiki/Q380172","display_name":"Binary tree","level":2,"score":0.0731130838394165},{"id":"https://openalex.org/C91154448","wikidata":"https://www.wikidata.org/wiki/Q623818","display_name":"Binary search tree","level":3,"score":0.06557139754295349},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3390/sym16070790","is_oa":true,"landing_page_url":"https://doi.org/10.3390/sym16070790","pdf_url":"https://www.mdpi.com/2073-8994/16/7/790/pdf?version=1719214657","source":{"id":"https://openalex.org/S190787756","display_name":"Symmetry","issn_l":"2073-8994","issn":["2073-8994"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Symmetry","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:f97a7c6c53634c0ea28ecff0bba1f5d3","is_oa":false,"landing_page_url":"https://doaj.org/article/f97a7c6c53634c0ea28ecff0bba1f5d3","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Symmetry, Vol 16, Iss 7, p 790 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/sym16070790","is_oa":true,"landing_page_url":"https://doi.org/10.3390/sym16070790","pdf_url":"https://www.mdpi.com/2073-8994/16/7/790/pdf?version=1719214657","source":{"id":"https://openalex.org/S190787756","display_name":"Symmetry","issn_l":"2073-8994","issn":["2073-8994"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Symmetry","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.5400000214576721}],"awards":[{"id":"https://openalex.org/G5087372468","display_name":null,"funder_award_id":"CGS D-589644-2024","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G5789863221","display_name":null,"funder_award_id":"326911","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G6112313432","display_name":"Nouvelle approche du regroupement des arbres phylog\u00e9n\u00e9tiques par l'exploration du projet de l'Arbre de Vie","funder_award_id":"326911","funder_id":"https://openalex.org/F4320331165","funder_display_name":"Fonds de recherche du Qu\u00e9bec"}],"funders":[{"id":"https://openalex.org/F4320311614","display_name":"Universit\u00e9 de Sherbrooke","ror":"https://ror.org/00kybxq39"},{"id":"https://openalex.org/F4320331165","display_name":"Fonds de recherche du Qu\u00e9bec","ror":"https://ror.org/00w3qhf76"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4399968468.pdf"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1971935354","https://openalex.org/W1999727705","https://openalex.org/W2005631842","https://openalex.org/W2006876662","https://openalex.org/W2058366551","https://openalex.org/W2060425093","https://openalex.org/W2104783359","https://openalex.org/W2116373667","https://openalex.org/W2143794041","https://openalex.org/W2171510621","https://openalex.org/W2799249604","https://openalex.org/W2805555771","https://openalex.org/W2902297217","https://openalex.org/W2951002538","https://openalex.org/W2957866543","https://openalex.org/W3016377605","https://openalex.org/W3038369633","https://openalex.org/W3043286155","https://openalex.org/W3104455460","https://openalex.org/W3138529574","https://openalex.org/W3138967247","https://openalex.org/W3184369081","https://openalex.org/W3210477677","https://openalex.org/W3215972110","https://openalex.org/W4200051093","https://openalex.org/W4206527985","https://openalex.org/W4206573133","https://openalex.org/W4210681352","https://openalex.org/W4220757311","https://openalex.org/W4246728774","https://openalex.org/W4254848882","https://openalex.org/W4294051021","https://openalex.org/W4323066661","https://openalex.org/W4323240958","https://openalex.org/W4379662611","https://openalex.org/W4381839756","https://openalex.org/W4385611479","https://openalex.org/W4386989977","https://openalex.org/W4394785938","https://openalex.org/W6649753774"],"related_works":["https://openalex.org/W85430217","https://openalex.org/W4389053046","https://openalex.org/W2800044728","https://openalex.org/W3088015816","https://openalex.org/W2363720861","https://openalex.org/W2607237371","https://openalex.org/W4205930990","https://openalex.org/W4287661213","https://openalex.org/W4210941983","https://openalex.org/W1998730751"],"abstract_inverted_index":{"Comparing":[0],"phylogenetic":[1,28,61,90],"trees":[2,29,42,62,68,91,103],"is":[3,39,104],"a":[4,55,105],"prominent":[5],"problem":[6],"widely":[7],"used":[8],"in":[9,119],"applications":[10],"such":[11],"as":[12],"clustering":[13],"and":[14,63,85,107],"building":[15],"the":[16,32,37,65,82,86,89,97,112],"Tree":[17],"of":[18,35,50,75,88,111],"Life.":[19],"While":[20],"there":[21],"are":[22],"many":[23],"well-developed":[24],"distance":[25,66,98],"measures":[26],"for":[27,41,59],"defined":[30,43,69],"on":[31,44,70],"same":[33],"set":[34],"taxa,":[36],"situation":[38],"contrasting":[40],"different":[45,71],"but":[46,72],"mutually":[47],"overlapping":[48,73],"sets":[49,74],"taxa.":[51,76],"This":[52,77],"paper":[53],"presents":[54],"new":[56,113],"polynomial-time":[57],"algorithm":[58],"completing":[60],"computing":[64],"between":[67],"novel":[78],"approach":[79],"considers":[80],"both":[81],"branch":[83],"lengths":[84],"topology":[87],"being":[92],"compared.":[93],"We":[94],"demonstrate":[95],"that":[96],"measure":[99],"applied":[100],"to":[101],"completed":[102],"metric":[106],"provide":[108],"several":[109],"properties":[110],"method,":[114],"including":[115],"its":[116],"symmetrical":[117],"nature":[118],"tree":[120],"completion.":[121]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":2}],"updated_date":"2026-06-22T08:00:12.763002","created_date":"2025-10-10T00:00:00"}
