{"id":"https://openalex.org/W4389471886","doi":"https://doi.org/10.3390/sym15122176","title":"Steady State Kinetics for Enzymes with Multiple Binding Sites Upstream of the Catalytic Site","display_name":"Steady State Kinetics for Enzymes with Multiple Binding Sites Upstream of the Catalytic Site","publication_year":2023,"publication_date":"2023-12-08","ids":{"openalex":"https://openalex.org/W4389471886","doi":"https://doi.org/10.3390/sym15122176"},"language":"en","primary_location":{"id":"doi:10.3390/sym15122176","is_oa":true,"landing_page_url":"https://doi.org/10.3390/sym15122176","pdf_url":"https://www.mdpi.com/2073-8994/15/12/2176/pdf?version=1702017348","source":{"id":"https://openalex.org/S190787756","display_name":"Symmetry","issn_l":"2073-8994","issn":["2073-8994"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Symmetry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2073-8994/15/12/2176/pdf?version=1702017348","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052288712","display_name":"Manuel I. Osorio","orcid":"https://orcid.org/0000-0002-1297-8351"},"institutions":[{"id":"https://openalex.org/I13897259","display_name":"Universidad Andr\u00e9s Bello","ror":"https://ror.org/01qq57711","country_code":"CL","type":"education","lineage":["https://openalex.org/I13897259"]},{"id":"https://openalex.org/I911713783","display_name":"Universidad Diego Portales","ror":"https://ror.org/03gtdcg60","country_code":"CL","type":"education","lineage":["https://openalex.org/I911713783"]}],"countries":["CL"],"is_corresponding":true,"raw_author_name":"Manuel I. Osorio","raw_affiliation_strings":["Facultad de Medicina, Universidad Diego Portales, Santiago 8370007, Chile","Facultad de Odontolog\u00eda, Universidad Andres Bello, Santiago 8370133, Chile"],"raw_orcid":"https://orcid.org/0000-0002-1297-8351","affiliations":[{"raw_affiliation_string":"Facultad de Medicina, Universidad Diego Portales, Santiago 8370007, Chile","institution_ids":["https://openalex.org/I911713783"]},{"raw_affiliation_string":"Facultad de Odontolog\u00eda, Universidad Andres Bello, Santiago 8370133, Chile","institution_ids":["https://openalex.org/I13897259"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064793780","display_name":"Mircea Petrache","orcid":"https://orcid.org/0000-0003-2181-169X"},"institutions":[{"id":"https://openalex.org/I162148367","display_name":"Pontificia Universidad Cat\u00f3lica de Chile","ror":"https://ror.org/04teye511","country_code":"CL","type":"education","lineage":["https://openalex.org/I162148367"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Mircea Petrache","raw_affiliation_strings":["Facultad de Matematicas, Pontificia Universidad Cat\u00f3lica de Chile, Avda. Vicu\u00f1a Mackenna 4860, Santiago 6904441, Chile"],"raw_orcid":"https://orcid.org/0000-0003-2181-169X","affiliations":[{"raw_affiliation_string":"Facultad de Matematicas, Pontificia Universidad Cat\u00f3lica de Chile, Avda. Vicu\u00f1a Mackenna 4860, Santiago 6904441, Chile","institution_ids":["https://openalex.org/I162148367"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009370333","display_name":"Dino G. Salinas","orcid":"https://orcid.org/0000-0001-8152-1622"},"institutions":[{"id":"https://openalex.org/I911713783","display_name":"Universidad Diego Portales","ror":"https://ror.org/03gtdcg60","country_code":"CL","type":"education","lineage":["https://openalex.org/I911713783"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Dino G. Salinas","raw_affiliation_strings":["Facultad de Medicina, Universidad Diego Portales, Santiago 8370007, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Facultad de Medicina, Universidad Diego Portales, Santiago 8370007, Chile","institution_ids":["https://openalex.org/I911713783"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089667110","display_name":"Felipe Valenzuela-Ibaceta","orcid":null},"institutions":[{"id":"https://openalex.org/I13897259","display_name":"Universidad Andr\u00e9s Bello","ror":"https://ror.org/01qq57711","country_code":"CL","type":"education","lineage":["https://openalex.org/I13897259"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Felipe Valenzuela-Ibaceta","raw_affiliation_strings":["Center for Bioinformatics and Integrative Biology, Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago 8370186, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Integrative Biology, Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago 8370186, Chile","institution_ids":["https://openalex.org/I13897259"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013850089","display_name":"Fernando D. Gonz\u00e1lez\u2010Nilo","orcid":"https://orcid.org/0000-0001-6857-3575"},"institutions":[{"id":"https://openalex.org/I13897259","display_name":"Universidad Andr\u00e9s Bello","ror":"https://ror.org/01qq57711","country_code":"CL","type":"education","lineage":["https://openalex.org/I13897259"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Fernando Gonz\u00e1lez-Nilo","raw_affiliation_strings":["Center for Bioinformatics and Integrative Biology, Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago 8370186, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Integrative Biology, Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago 8370186, Chile","institution_ids":["https://openalex.org/I13897259"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008352341","display_name":"William Tiznado","orcid":"https://orcid.org/0000-0002-6061-8879"},"institutions":[{"id":"https://openalex.org/I13897259","display_name":"Universidad Andr\u00e9s Bello","ror":"https://ror.org/01qq57711","country_code":"CL","type":"education","lineage":["https://openalex.org/I13897259"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"William Tiznado","raw_affiliation_strings":["Computational and Theoretical Chemistry Group, Departamento de Ciencias Qu\u00edmicas, Facultad de Ciencias Exactas, Universidad Andres Bello, Rep\u00fablica 498, Santiago 8370251, Chile"],"raw_orcid":"https://orcid.org/0000-0002-6061-8879","affiliations":[{"raw_affiliation_string":"Computational and Theoretical Chemistry Group, Departamento de Ciencias Qu\u00edmicas, Facultad de Ciencias Exactas, Universidad Andres Bello, Rep\u00fablica 498, Santiago 8370251, Chile","institution_ids":["https://openalex.org/I13897259"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087385103","display_name":"Jos\u00e9 M. P\u00e9rez\u2010Donoso","orcid":"https://orcid.org/0000-0002-9506-1716"},"institutions":[{"id":"https://openalex.org/I13897259","display_name":"Universidad Andr\u00e9s Bello","ror":"https://ror.org/01qq57711","country_code":"CL","type":"education","lineage":["https://openalex.org/I13897259"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 M. P\u00e9rez-Donoso","raw_affiliation_strings":["Center for Bioinformatics and Integrative Biology, Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago 8370186, Chile"],"raw_orcid":"https://orcid.org/0000-0002-9506-1716","affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Integrative Biology, Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago 8370186, Chile","institution_ids":["https://openalex.org/I13897259"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101799154","display_name":"Denisse Bravo","orcid":"https://orcid.org/0000-0002-5749-4086"},"institutions":[{"id":"https://openalex.org/I13897259","display_name":"Universidad Andr\u00e9s Bello","ror":"https://ror.org/01qq57711","country_code":"CL","type":"education","lineage":["https://openalex.org/I13897259"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Denisse Bravo","raw_affiliation_strings":["Facultad de Odontolog\u00eda, Universidad Andres Bello, Santiago 8370133, Chile"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Facultad de Odontolog\u00eda, Universidad Andres Bello, Santiago 8370133, Chile","institution_ids":["https://openalex.org/I13897259"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070365857","display_name":"Osvaldo Y\u00e1\u00f1ez","orcid":"https://orcid.org/0000-0001-8993-9353"},"institutions":[{"id":"https://openalex.org/I4210100770","display_name":"University of the Americas","ror":"https://ror.org/0166e9x11","country_code":"CL","type":"education","lineage":["https://openalex.org/I4210100770"]}],"countries":["CL"],"is_corresponding":true,"raw_author_name":"Osvaldo Y\u00e1\u00f1ez","raw_affiliation_strings":["N\u00facleo de Investigaci\u00f3n en Data Science, Facultad de Ingenier\u00eda y Negocios, Universidad de las Am\u00e9ricas, Santiago 7500000, Chile"],"raw_orcid":"https://orcid.org/0000-0001-8993-9353","affiliations":[{"raw_affiliation_string":"N\u00facleo de Investigaci\u00f3n en Data Science, Facultad de Ingenier\u00eda y Negocios, Universidad de las Am\u00e9ricas, Santiago 7500000, Chile","institution_ids":["https://openalex.org/I4210100770"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5052288712","https://openalex.org/A5070365857"],"corresponding_institution_ids":["https://openalex.org/I13897259","https://openalex.org/I4210100770","https://openalex.org/I911713783"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":0.4361,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.67706688,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"15","issue":"12","first_page":"2176","last_page":"2176"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10404","display_name":"Enzyme Catalysis and Immobilization","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10404","display_name":"Enzyme Catalysis and Immobilization","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12191","display_name":"Chemical Reaction Mechanisms","score":0.9842000007629395,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kinetics","display_name":"Kinetics","score":0.6271855235099792},{"id":"https://openalex.org/keywords/michaelis\u2013menten-kinetics","display_name":"Michaelis\u2013Menten kinetics","score":0.600053071975708},{"id":"https://openalex.org/keywords/steady-state","display_name":"Steady state (chemistry)","score":0.59485924243927},{"id":"https://openalex.org/keywords/kinetic-energy","display_name":"Kinetic energy","score":0.5782055854797363},{"id":"https://openalex.org/keywords/substrate","display_name":"Substrate (aquarium)","score":0.573612630367279},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.5352708697319031},{"id":"https://openalex.org/keywords/thermodynamics","display_name":"Thermodynamics","score":0.5040251612663269},{"id":"https://openalex.org/keywords/catalysis","display_name":"Catalysis","score":0.4632396101951599},{"id":"https://openalex.org/keywords/work","display_name":"Work (physics)","score":0.4610971212387085},{"id":"https://openalex.org/keywords/enzyme-kinetics","display_name":"Enzyme kinetics","score":0.44562166929244995},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.34853750467300415},{"id":"https://openalex.org/keywords/stereochemistry","display_name":"Stereochemistry","score":0.323536217212677},{"id":"https://openalex.org/keywords/physical-chemistry","display_name":"Physical chemistry","score":0.28537607192993164},{"id":"https://openalex.org/keywords/active-site","display_name":"Active site","score":0.24975785613059998},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2382928729057312},{"id":"https://openalex.org/keywords/enzyme-assay","display_name":"Enzyme assay","score":0.1276223361492157},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11983919143676758},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10140877962112427},{"id":"https://openalex.org/keywords/classical-mechanics","display_name":"Classical mechanics","score":0.071787029504776}],"concepts":[{"id":"https://openalex.org/C148898269","wikidata":"https://www.wikidata.org/wiki/Q1108792","display_name":"Kinetics","level":2,"score":0.6271855235099792},{"id":"https://openalex.org/C64915919","wikidata":"https://www.wikidata.org/wiki/Q613955","display_name":"Michaelis\u2013Menten kinetics","level":4,"score":0.600053071975708},{"id":"https://openalex.org/C8171440","wikidata":"https://www.wikidata.org/wiki/Q903414","display_name":"Steady state (chemistry)","level":2,"score":0.59485924243927},{"id":"https://openalex.org/C135889238","wikidata":"https://www.wikidata.org/wiki/Q46276","display_name":"Kinetic energy","level":2,"score":0.5782055854797363},{"id":"https://openalex.org/C2777289219","wikidata":"https://www.wikidata.org/wiki/Q7632154","display_name":"Substrate (aquarium)","level":2,"score":0.573612630367279},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5352708697319031},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.5040251612663269},{"id":"https://openalex.org/C161790260","wikidata":"https://www.wikidata.org/wiki/Q82264","display_name":"Catalysis","level":2,"score":0.4632396101951599},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.4610971212387085},{"id":"https://openalex.org/C56856141","wikidata":"https://www.wikidata.org/wiki/Q883112","display_name":"Enzyme kinetics","level":4,"score":0.44562166929244995},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.34853750467300415},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.323536217212677},{"id":"https://openalex.org/C147789679","wikidata":"https://www.wikidata.org/wiki/Q11372","display_name":"Physical chemistry","level":1,"score":0.28537607192993164},{"id":"https://openalex.org/C41183919","wikidata":"https://www.wikidata.org/wiki/Q423026","display_name":"Active site","level":3,"score":0.24975785613059998},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2382928729057312},{"id":"https://openalex.org/C28212737","wikidata":"https://www.wikidata.org/wiki/Q5381543","display_name":"Enzyme assay","level":3,"score":0.1276223361492157},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11983919143676758},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10140877962112427},{"id":"https://openalex.org/C74650414","wikidata":"https://www.wikidata.org/wiki/Q11397","display_name":"Classical mechanics","level":1,"score":0.071787029504776},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3390/sym15122176","is_oa":true,"landing_page_url":"https://doi.org/10.3390/sym15122176","pdf_url":"https://www.mdpi.com/2073-8994/15/12/2176/pdf?version=1702017348","source":{"id":"https://openalex.org/S190787756","display_name":"Symmetry","issn_l":"2073-8994","issn":["2073-8994"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Symmetry","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:9e46df14620b403db8ee4f327d2e264a","is_oa":false,"landing_page_url":"https://doaj.org/article/9e46df14620b403db8ee4f327d2e264a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Symmetry, Vol 15, Iss 12, p 2176 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/sym15122176","is_oa":true,"landing_page_url":"https://doi.org/10.3390/sym15122176","pdf_url":"https://www.mdpi.com/2073-8994/15/12/2176/pdf?version=1702017348","source":{"id":"https://openalex.org/S190787756","display_name":"Symmetry","issn_l":"2073-8994","issn":["2073-8994"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Symmetry","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4389471886.pdf"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W2006143086","https://openalex.org/W2011343696","https://openalex.org/W2126928912","https://openalex.org/W2133620840","https://openalex.org/W2523515292","https://openalex.org/W2606902047","https://openalex.org/W2904015010","https://openalex.org/W2910107890","https://openalex.org/W2911585371","https://openalex.org/W2936990387","https://openalex.org/W2952652437","https://openalex.org/W2970667920","https://openalex.org/W3007899271","https://openalex.org/W3080100106","https://openalex.org/W3099677335","https://openalex.org/W4220777044","https://openalex.org/W6651695853","https://openalex.org/W6758496479","https://openalex.org/W6766858586"],"related_works":["https://openalex.org/W2591054106","https://openalex.org/W3211562687","https://openalex.org/W2065877394","https://openalex.org/W4246417352","https://openalex.org/W4240425852","https://openalex.org/W2091710846","https://openalex.org/W2418977795","https://openalex.org/W4205130287","https://openalex.org/W2016229011","https://openalex.org/W2883631425"],"abstract_inverted_index":{"The":[0,80,105,126],"Michaelis\u2013Menten":[1,208],"mechanism,":[2],"which":[3,63],"describes":[4],"the":[5,17,29,32,41,44,51,64,76,97,101,132,143,149,153,156,160,188,191,207,211,215,231,238,242,258,269,272,279,289,296,323],"binding":[6,30,36],"of":[7,16,31,53,100,107,128,134,155,159,172,177,190,230,240,252,271,307,325],"a":[8,14,20,59,140,218,304],"substrate":[9,33],"to":[10,34,40,43,92,266,274,285,315],"an":[11],"enzyme,":[12],"is":[13,195,226],"simplification":[15],"process":[18],"on":[19,167,268,281],"molecular":[21],"scale.":[22],"A":[23],"more":[24,71],"detailed":[25],"model":[26,77,212],"should":[27],"include":[28],"precatalytic":[35],"sites":[37,293,320],"(PCBSs)":[38],"prior":[39],"transition":[42],"catalytic":[45,243,290],"site.":[46],"Our":[47],"work":[48],"shows":[49],"that":[50,197,224,311],"incorporation":[52],"PCBSs,":[54,214,241],"in":[55,62,75,295],"steady-state":[56],"conditions,":[57],"generates":[58],"Michaelis\u2013Menten-type":[60],"expression,":[61],"kinetic":[65,178,185],"parameters":[66,112,283],"KM":[67,129,198,235,275],"and":[68,110,174,199,223,276],"Vmax":[69,138,200,216,277],"adopt":[70],"complex":[72],"expressions":[73],"than":[74,203],"without":[78],"PCBSs.":[79],"equations":[81],"governing":[82],"reaction":[83],"kinetics":[84],"can":[85,113],"be":[86,114,313],"seen":[87],"as":[88,116,131],"generalized":[89],"symmetries,":[90],"relative":[91],"time":[93,123],"translation":[94],"actions":[95],"over":[96],"state":[98],"space":[99],"underlying":[102],"chemical":[103],"system.":[104],"study":[106,263],"their":[108],"structure":[109],"defining":[111],"interpreted":[115],"looking":[117],"for":[118,187,228,246,317,322],"invariants":[119],"associated":[120],"with":[121,169,183,206,213,237,257,327],"these":[122,181,253],"evolution":[124],"actions.":[125],"expression":[127],"decreases":[130,236],"number":[133,239],"PCBSs":[135,145,173],"increases,":[136],"while":[137],"reaches":[139,217],"minimum":[141,219],"when":[142],"first":[144,297],"are":[146,201,255],"incorporated":[147],"into":[148],"model.":[150,209,250],"To":[151],"evaluate":[152],"trend":[154],"dynamic":[157],"behavior":[158],"system,":[161],"numerical":[162],"simulations":[163],"were":[164],"performed":[165],"based":[166],"schemes":[168],"different":[170],"numbers":[171],"six":[175],"conditions":[176],"constants.":[179],"From":[180],"simulations,":[182],"equal":[184],"constants":[186],"formation":[189],"Substrate/PCBS":[192],"complex,":[193],"it":[194,302],"observed":[196],"lower":[202],"those":[204],"obtained":[205],"For":[210],"at":[220,292],"one":[221],"PCBS":[222,273],"value":[225],"maintained":[227],"all":[229],"systems":[232],"evaluated.":[233],"Since":[234],"efficiency":[244],"increases":[245],"enzymes":[247],"fitting":[248],"this":[249],"All":[251],"observations":[254],"consistent":[256],"general":[259],"equation":[260],"obtained.":[261],"This":[262],"allows":[264],"us":[265],"explain,":[267],"basis":[270],"ratios,":[278],"effect":[280],"enzyme":[282,308,329],"due":[284],"mutations":[286],"far":[287],"from":[288],"site,":[291],"involved":[294],"enzyme/substrate":[298],"interaction.":[299],"In":[300],"addition,":[301],"incorporates":[303],"new":[305,318],"mechanism":[306],"activity":[309],"regulation":[310],"could":[312],"fundamental":[314],"search":[316],"activity-modulating":[319],"or":[321],"design":[324],"mutants":[326],"modified":[328],"parameters.":[330]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
