{"id":"https://openalex.org/W4318479512","doi":"https://doi.org/10.3390/sym15020349","title":"A New Class of Graph Grammars and Modelling of Certain Biological Structures","display_name":"A New Class of Graph Grammars and Modelling of Certain Biological Structures","publication_year":2023,"publication_date":"2023-01-27","ids":{"openalex":"https://openalex.org/W4318479512","doi":"https://doi.org/10.3390/sym15020349"},"language":"en","primary_location":{"id":"doi:10.3390/sym15020349","is_oa":true,"landing_page_url":"https://doi.org/10.3390/sym15020349","pdf_url":"https://www.mdpi.com/2073-8994/15/2/349/pdf?version=1676461888","source":{"id":"https://openalex.org/S190787756","display_name":"Symmetry","issn_l":"2073-8994","issn":["2073-8994"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Symmetry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2073-8994/15/2/349/pdf?version=1676461888","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033916715","display_name":"Jayakrishna Vijayakumar","orcid":null},"institutions":[{"id":"https://openalex.org/I3129367976","display_name":"A P J Abdul Kalam Technological University","ror":"https://ror.org/04yn30r61","country_code":"IN","type":"education","lineage":["https://openalex.org/I3129367976"]},{"id":"https://openalex.org/I4396570478","display_name":"Amal Jyothi College of Engineering","ror":"https://ror.org/02cn0mn15","country_code":null,"type":"education","lineage":["https://openalex.org/I4396570478"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Jayakrishna Vijayakumar","raw_affiliation_strings":["Department of Computer Science and Engineering, Amal Jyothi College of Engineering, Kanjirappally 686 518, Kerala, India","Research Scholar, APJ Abdul Kalam Technological University, Thiruvananthapuram 695 016, Kerala, India"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Amal Jyothi College of Engineering, Kanjirappally 686 518, Kerala, India","institution_ids":["https://openalex.org/I4396570478"]},{"raw_affiliation_string":"Research Scholar, APJ Abdul Kalam Technological University, Thiruvananthapuram 695 016, Kerala, India","institution_ids":["https://openalex.org/I3129367976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011522168","display_name":"Lisa Mathew","orcid":"https://orcid.org/0000-0002-3722-3326"},"institutions":[{"id":"https://openalex.org/I4396570478","display_name":"Amal Jyothi College of Engineering","ror":"https://ror.org/02cn0mn15","country_code":null,"type":"education","lineage":["https://openalex.org/I4396570478"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Lisa Mathew","raw_affiliation_strings":["Department of Basic Sciences, Amal Jyothi College of Engineering, Kanjirappally 686 518, Kerala, India"],"affiliations":[{"raw_affiliation_string":"Department of Basic Sciences, Amal Jyothi College of Engineering, Kanjirappally 686 518, Kerala, India","institution_ids":["https://openalex.org/I4396570478"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081696143","display_name":"Atulya K. Nagar","orcid":"https://orcid.org/0000-0001-5549-6435"},"institutions":[{"id":"https://openalex.org/I44852757","display_name":"Liverpool Hope University","ror":"https://ror.org/03ctjbj91","country_code":"GB","type":"education","lineage":["https://openalex.org/I44852757"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Atulya K. Nagar","raw_affiliation_strings":["School of Mathematics, Computer Science and Engineering, Liverpool Hope University, Liverpool L16 9JD, UK"],"affiliations":[{"raw_affiliation_string":"School of Mathematics, Computer Science and Engineering, Liverpool Hope University, Liverpool L16 9JD, UK","institution_ids":["https://openalex.org/I44852757"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5011522168"],"corresponding_institution_ids":["https://openalex.org/I4396570478"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":0.4669,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.65711249,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"15","issue":"2","first_page":"349","last_page":"349"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9677000045776367,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.673145055770874},{"id":"https://openalex.org/keywords/null-graph","display_name":"Null graph","score":0.598272979259491},{"id":"https://openalex.org/keywords/voltage-graph","display_name":"Voltage graph","score":0.586811900138855},{"id":"https://openalex.org/keywords/tree-adjoining-grammar","display_name":"Tree-adjoining grammar","score":0.5627097487449646},{"id":"https://openalex.org/keywords/graph-rewriting","display_name":"Graph rewriting","score":0.5395293831825256},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.44527748227119446},{"id":"https://openalex.org/keywords/l-attributed-grammar","display_name":"L-attributed grammar","score":0.4270380437374115},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.41718846559524536},{"id":"https://openalex.org/keywords/rule-based-machine-translation","display_name":"Rule-based machine translation","score":0.41495072841644287},{"id":"https://openalex.org/keywords/butterfly-graph","display_name":"Butterfly graph","score":0.4106443524360657},{"id":"https://openalex.org/keywords/line-graph","display_name":"Line graph","score":0.4039424657821655},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3865872621536255},{"id":"https://openalex.org/keywords/context-free-grammar","display_name":"Context-free grammar","score":0.2504310607910156},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17874187231063843}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.673145055770874},{"id":"https://openalex.org/C17169500","wikidata":"https://www.wikidata.org/wiki/Q3033506","display_name":"Null graph","level":5,"score":0.598272979259491},{"id":"https://openalex.org/C22149727","wikidata":"https://www.wikidata.org/wiki/Q7940747","display_name":"Voltage graph","level":4,"score":0.586811900138855},{"id":"https://openalex.org/C134083981","wikidata":"https://www.wikidata.org/wiki/Q1754022","display_name":"Tree-adjoining grammar","level":4,"score":0.5627097487449646},{"id":"https://openalex.org/C558772884","wikidata":"https://www.wikidata.org/wiki/Q1508564","display_name":"Graph rewriting","level":3,"score":0.5395293831825256},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.44527748227119446},{"id":"https://openalex.org/C67621940","wikidata":"https://www.wikidata.org/wiki/Q3113340","display_name":"L-attributed grammar","level":4,"score":0.4270380437374115},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.41718846559524536},{"id":"https://openalex.org/C53893814","wikidata":"https://www.wikidata.org/wiki/Q7378909","display_name":"Rule-based machine translation","level":2,"score":0.41495072841644287},{"id":"https://openalex.org/C18819970","wikidata":"https://www.wikidata.org/wiki/Q3035340","display_name":"Butterfly graph","level":5,"score":0.4106443524360657},{"id":"https://openalex.org/C203776342","wikidata":"https://www.wikidata.org/wiki/Q1378376","display_name":"Line graph","level":3,"score":0.4039424657821655},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3865872621536255},{"id":"https://openalex.org/C97212296","wikidata":"https://www.wikidata.org/wiki/Q338047","display_name":"Context-free grammar","level":3,"score":0.2504310607910156},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17874187231063843}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3390/sym15020349","is_oa":true,"landing_page_url":"https://doi.org/10.3390/sym15020349","pdf_url":"https://www.mdpi.com/2073-8994/15/2/349/pdf?version=1676461888","source":{"id":"https://openalex.org/S190787756","display_name":"Symmetry","issn_l":"2073-8994","issn":["2073-8994"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Symmetry","raw_type":"journal-article"},{"id":"pmh:oai:hira.hope.ac.uk:3780","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402035","display_name":"Hope's Institutional Research Archive (Liverpool Hope University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I44852757","host_organization_name":"Liverpool Hope University","host_organization_lineage":["https://openalex.org/I44852757"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:doaj.org/article:08abeb0ee58c4bacad1e1f1c727913be","is_oa":true,"landing_page_url":"https://doaj.org/article/08abeb0ee58c4bacad1e1f1c727913be","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Symmetry, Vol 15, Iss 2, p 349 (2023)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/2073-8994/15/2/349/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/sym15020349","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Symmetry","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/sym15020349","is_oa":true,"landing_page_url":"https://doi.org/10.3390/sym15020349","pdf_url":"https://www.mdpi.com/2073-8994/15/2/349/pdf?version=1676461888","source":{"id":"https://openalex.org/S190787756","display_name":"Symmetry","issn_l":"2073-8994","issn":["2073-8994"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Symmetry","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.6200000047683716,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4318479512.pdf","grobid_xml":"https://content.openalex.org/works/W4318479512.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W128165965","https://openalex.org/W646088219","https://openalex.org/W1508113248","https://openalex.org/W1539163926","https://openalex.org/W1574796876","https://openalex.org/W1600820878","https://openalex.org/W1608182085","https://openalex.org/W2006927892","https://openalex.org/W2046756647","https://openalex.org/W2056158263","https://openalex.org/W2083312088","https://openalex.org/W2919419996","https://openalex.org/W3003422837","https://openalex.org/W3006690491","https://openalex.org/W4221145170","https://openalex.org/W4245888925","https://openalex.org/W6605215159","https://openalex.org/W6632310999","https://openalex.org/W6634533480","https://openalex.org/W6639057812","https://openalex.org/W6681596271"],"related_works":["https://openalex.org/W4285260839","https://openalex.org/W1968022708","https://openalex.org/W981956758","https://openalex.org/W1576087595","https://openalex.org/W2403839235","https://openalex.org/W2556540294","https://openalex.org/W1534696515","https://openalex.org/W2096529162","https://openalex.org/W1491614438","https://openalex.org/W1504521618"],"abstract_inverted_index":{"Graph":[0],"grammars":[1,21,93,107,125,150],"can":[2],"be":[3,161],"used":[4,127],"to":[5,128,160],"model":[6,129],"the":[7,17,32,50,62,112],"development":[8],"of":[9,28,34,52,57,66,77,91,105,147],"diverse":[10],"graph":[11,20,67,80,85,92,97,106,119,124,149],"families.":[12],"Since":[13],"their":[14,157],"creation":[15],"in":[16,25,142,151],"late":[18],"1960s,":[19],"have":[22],"found":[23],"usage":[24],"a":[26,74],"variety":[27],"fields,":[29],"such":[30,135],"as":[31,41,43,83,136],"design":[33],"sophisticated":[35],"computer":[36,46],"systems":[37],"and":[38,48,59,99,115,138,156],"electronic":[39],"circuits,":[40],"well":[42],"visual":[44],"languages,":[45],"animation,":[47],"even":[49],"modelling":[51,152],"intricate":[53],"molecular":[54],"structures":[55,134,141,155],"Replacement":[56],"edges":[58],"nodes":[60],"are":[61,108],"two":[63],"primary":[64],"approaches":[65],"rewriting.":[68],"In":[69,121],"this":[70,88],"paper":[71],"we":[72,94,100],"introduce":[73],"new":[75,89],"type":[76],"node":[78,116],"replacement":[79],"grammar":[81],"known":[82],"nc-eNCE":[84],"grammar.":[86],"With":[87],"class":[90,104],"generated":[95],"certain":[96],"classes":[98],"showed":[101],"that":[102],"these":[103,123,148],"more":[109],"powerful":[110],"than":[111],"existing":[113],"edge":[114],"controlled":[117],"embedding":[118],"grammars.":[120],"addition,":[122],"were":[126],"several":[130],"common":[131],"protein":[132],"secondary":[133],"parallel":[137],"anti-parallel":[139],"\u03b2-sheet":[140],"different":[143],"configurations.":[144],"The":[145],"use":[146],"other":[153],"bio-chemical":[154],"interactions":[158],"remains":[159],"explored.":[162]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
