{"id":"https://openalex.org/W4292336531","doi":"https://doi.org/10.3390/sym14081724","title":"Invariants of Bonded Knotoids and Applications to Protein Folding","display_name":"Invariants of Bonded Knotoids and Applications to Protein Folding","publication_year":2022,"publication_date":"2022-08-18","ids":{"openalex":"https://openalex.org/W4292336531","doi":"https://doi.org/10.3390/sym14081724"},"language":"en","primary_location":{"id":"doi:10.3390/sym14081724","is_oa":true,"landing_page_url":"https://doi.org/10.3390/sym14081724","pdf_url":"https://www.mdpi.com/2073-8994/14/8/1724/pdf?version=1660811817","source":{"id":"https://openalex.org/S190787756","display_name":"Symmetry","issn_l":"2073-8994","issn":["2073-8994"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Symmetry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2073-8994/14/8/1724/pdf?version=1660811817","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033623028","display_name":"Neslihan G\u00fcg\u00fcmc\u00fc","orcid":"https://orcid.org/0000-0001-7737-0606"},"institutions":[{"id":"https://openalex.org/I120217413","display_name":"Izmir Institute of Technology","ror":"https://ror.org/03stptj97","country_code":"TR","type":"education","lineage":["https://openalex.org/I120217413"]},{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE","TR"],"is_corresponding":true,"raw_author_name":"Neslihan G\u00fcg\u00fcmc\u00fc","raw_affiliation_strings":["Department of Mathematics, Izmir Institute of Technology, G\u00fclbah\u00e7e Campus, Izmir 35430, Turkey","Mathematics Institute, Georg-August University G\u00f6ttingen, Bunsenstrasse 3-5, 37073 G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Izmir Institute of Technology, G\u00fclbah\u00e7e Campus, Izmir 35430, Turkey","institution_ids":["https://openalex.org/I120217413"]},{"raw_affiliation_string":"Mathematics Institute, Georg-August University G\u00f6ttingen, Bunsenstrasse 3-5, 37073 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059458816","display_name":"Bo\u0161tjan Gabrov\u0161ek","orcid":"https://orcid.org/0000-0002-8272-5392"},"institutions":[{"id":"https://openalex.org/I153976015","display_name":"University of Ljubljana","ror":"https://ror.org/05njb9z20","country_code":"SI","type":"education","lineage":["https://openalex.org/I153976015"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Bostjan Gabrovsek","raw_affiliation_strings":["Faculty of Mathematics and Physics, University of Ljubljana, 1000 Ljubljana, Slovenia"],"raw_orcid":"https://orcid.org/0000-0002-8272-5392","affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Physics, University of Ljubljana, 1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I153976015"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057018104","display_name":"Louis H. Kauffman","orcid":"https://orcid.org/0000-0003-4135-8685"},"institutions":[{"id":"https://openalex.org/I188973947","display_name":"Novosibirsk State University","ror":"https://ror.org/04t2ss102","country_code":"RU","type":"education","lineage":["https://openalex.org/I188973947"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["RU","US"],"is_corresponding":false,"raw_author_name":"Louis H. Kauffman","raw_affiliation_strings":["Department of Mathematics, Statistics and Computer Science, University of Illinois at Chicago, 851 South Morgan St., Chicago, IL 60607-7045, USA","Department of Mechanics and Mathematics, Novosibirsk State University, Novosibirsk 630090, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Statistics and Computer Science, University of Illinois at Chicago, 851 South Morgan St., Chicago, IL 60607-7045, USA","institution_ids":["https://openalex.org/I39422238"]},{"raw_affiliation_string":"Department of Mechanics and Mathematics, Novosibirsk State University, Novosibirsk 630090, Russia","institution_ids":["https://openalex.org/I188973947"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5033623028"],"corresponding_institution_ids":["https://openalex.org/I120217413","https://openalex.org/I74656192"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2227},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2227},"fwci":3.0235,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.92249229,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"14","issue":"8","first_page":"1724","last_page":"1724"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10304","display_name":"Geometric and Algebraic Topology","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2608","display_name":"Geometry and Topology"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10304","display_name":"Geometric and Algebraic Topology","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2608","display_name":"Geometry and Topology"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.95660001039505,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11567","display_name":"semigroups and automata theory","score":0.9366000294685364,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tangle","display_name":"Tangle","score":0.7503816485404968},{"id":"https://openalex.org/keywords/vertex","display_name":"Vertex (graph theory)","score":0.68311607837677},{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.5279086232185364},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.4969327747821808},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39543989300727844},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.39276552200317383},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3256057798862457},{"id":"https://openalex.org/keywords/pure-mathematics","display_name":"Pure mathematics","score":0.29902803897857666},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2335624396800995},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.19777047634124756}],"concepts":[{"id":"https://openalex.org/C177738377","wikidata":"https://www.wikidata.org/wiki/Q7683003","display_name":"Tangle","level":2,"score":0.7503816485404968},{"id":"https://openalex.org/C80899671","wikidata":"https://www.wikidata.org/wiki/Q1304193","display_name":"Vertex (graph theory)","level":3,"score":0.68311607837677},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.5279086232185364},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.4969327747821808},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39543989300727844},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.39276552200317383},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3256057798862457},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.29902803897857666},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2335624396800995},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.19777047634124756},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3390/sym14081724","is_oa":true,"landing_page_url":"https://doi.org/10.3390/sym14081724","pdf_url":"https://www.mdpi.com/2073-8994/14/8/1724/pdf?version=1660811817","source":{"id":"https://openalex.org/S190787756","display_name":"Symmetry","issn_l":"2073-8994","issn":["2073-8994"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Symmetry","raw_type":"journal-article"},{"id":"pmh:oai:gcris.iyte.edu.tr:11147/12499","is_oa":true,"landing_page_url":"https://hdl.handle.net/11147/12499","pdf_url":"http://gcris.iyte.edu.tr/bitstreams/a033e297-948d-43fc-92c4-4a69559f95a7/download","source":{"id":"https://openalex.org/S4306400894","display_name":"\u0130YTE (\u0130ZM\u0130R Y\u00dcKSEK TEKNOLOJ\u0130 ENST\u0130T\u00dcS\u00dc)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I120217413","host_organization_name":"Izmir Institute of Technology","host_organization_lineage":["https://openalex.org/I120217413"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:29340f568fa843ebbe21ed13b53963a9","is_oa":true,"landing_page_url":"https://doaj.org/article/29340f568fa843ebbe21ed13b53963a9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Symmetry, Vol 14, Iss 8, p 1724 (2022)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/2073-8994/14/8/1724/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/sym14081724","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Symmetry","raw_type":"Text"},{"id":"pmh:oai:publications.goettingen-research-online.de:2/114604","is_oa":true,"landing_page_url":"https://resolver.sub.uni-goettingen.de/purl?gro-2/114604","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.3390/sym14081724","is_oa":true,"landing_page_url":"https://doi.org/10.3390/sym14081724","pdf_url":"https://www.mdpi.com/2073-8994/14/8/1724/pdf?version=1660811817","source":{"id":"https://openalex.org/S190787756","display_name":"Symmetry","issn_l":"2073-8994","issn":["2073-8994"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Symmetry","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2152409256","display_name":"Topology and its applications","funder_award_id":"P1-0292","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"}],"funders":[{"id":"https://openalex.org/F4320322554","display_name":"Javna Agencija za Raziskovalno Dejavnost RS","ror":"https://ror.org/059bp8k51"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4292336531.pdf"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W2032764332","https://openalex.org/W2063452657","https://openalex.org/W2071754357","https://openalex.org/W2481230566","https://openalex.org/W2608401447","https://openalex.org/W2620111222","https://openalex.org/W2754103563","https://openalex.org/W2810769313","https://openalex.org/W2906083917","https://openalex.org/W2912682397","https://openalex.org/W2963690630","https://openalex.org/W2964122149","https://openalex.org/W3023934190","https://openalex.org/W3045286831","https://openalex.org/W3120633036","https://openalex.org/W4206910808","https://openalex.org/W4327976424","https://openalex.org/W6863749515"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W4387747504","https://openalex.org/W4324297701","https://openalex.org/W1988331941","https://openalex.org/W2091266799","https://openalex.org/W2066873783","https://openalex.org/W1920804764","https://openalex.org/W2020532232","https://openalex.org/W2127661377","https://openalex.org/W3111310291"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"we":[3],"study":[4],"knotoids":[5],"with":[6],"extra":[7],"graphical":[8],"structure":[9,54],"(bonded":[10],"knotoids)":[11],"in":[12],"the":[13,49,52],"settings":[14],"of":[15,36,51,55],"rigid":[16],"vertex":[17,20],"and":[18,31],"topological":[19,53],"graphs.":[21],"We":[22,40],"construct":[23],"bonded":[24,38],"knotoid":[25],"invariants":[26,44],"by":[27],"applying":[28],"tangle":[29],"insertion":[30],"unplugging":[32],"at":[33],"bonding":[34],"sites":[35],"a":[37],"knotoid.":[39],"demonstrate":[41],"that":[42],"our":[43],"can":[45],"be":[46],"used":[47],"for":[48],"analysis":[50],"proteins.":[56]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3}],"updated_date":"2026-08-18T07:49:30.821534","created_date":"2025-10-10T00:00:00"}
