{"id":"https://openalex.org/W3006636644","doi":"https://doi.org/10.3390/sym12020273","title":"Alternative Hydrophobic Core in Proteins\u2014The Effect of Specific Synergy","display_name":"Alternative Hydrophobic Core in Proteins\u2014The Effect of Specific Synergy","publication_year":2020,"publication_date":"2020-02-11","ids":{"openalex":"https://openalex.org/W3006636644","doi":"https://doi.org/10.3390/sym12020273","mag":"3006636644"},"language":"en","primary_location":{"id":"doi:10.3390/sym12020273","is_oa":true,"landing_page_url":"https://doi.org/10.3390/sym12020273","pdf_url":"https://www.mdpi.com/2073-8994/12/2/273/pdf?version=1582953141","source":{"id":"https://openalex.org/S190787756","display_name":"Symmetry","issn_l":"2073-8994","issn":["2073-8994"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Symmetry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2073-8994/12/2/273/pdf?version=1582953141","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027112769","display_name":"Piotr Fabian","orcid":"https://orcid.org/0000-0002-5152-6331"},"institutions":[{"id":"https://openalex.org/I119004910","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442","country_code":"PL","type":"education","lineage":["https://openalex.org/I119004910"]},{"id":"https://openalex.org/I4210087266","display_name":"Institute of Computer Science","ror":"https://ror.org/003fvp964","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210087266","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Piotr Fabian","raw_affiliation_strings":["Institute of Computer Science, Silesian University of Technology, Akademicka 16, 44-100 Gliwice, Poland"],"raw_orcid":"https://orcid.org/0000-0002-5152-6331","affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Silesian University of Technology, Akademicka 16, 44-100 Gliwice, Poland","institution_ids":["https://openalex.org/I119004910","https://openalex.org/I4210087266"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045740283","display_name":"Katarzyna St\u0105por","orcid":"https://orcid.org/0000-0003-3003-6592"},"institutions":[{"id":"https://openalex.org/I119004910","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442","country_code":"PL","type":"education","lineage":["https://openalex.org/I119004910"]},{"id":"https://openalex.org/I4210087266","display_name":"Institute of Computer Science","ror":"https://ror.org/003fvp964","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210087266","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Katarzyna Stapor","raw_affiliation_strings":["Institute of Computer Science, Silesian University of Technology, Akademicka 16, 44-100 Gliwice, Poland"],"raw_orcid":"https://orcid.org/0000-0003-3003-6592","affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Silesian University of Technology, Akademicka 16, 44-100 Gliwice, Poland","institution_ids":["https://openalex.org/I119004910","https://openalex.org/I4210087266"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068559370","display_name":"Mateusz Banach","orcid":"https://orcid.org/0000-0003-1806-9877"},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Mateusz Banach","raw_affiliation_strings":["Department of Bioinformatics and Telemedicine, Medical College, Jagiellonian University, Lazarza 16, 31-530 Krakow, Poland"],"raw_orcid":"https://orcid.org/0000-0003-1806-9877","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Telemedicine, Medical College, Jagiellonian University, Lazarza 16, 31-530 Krakow, Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063349964","display_name":"Magdalena Ptak-Kaczor","orcid":"https://orcid.org/0000-0003-0734-7229"},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Magdalena Ptak-Kaczor","raw_affiliation_strings":["Department of Bioinformatics and Telemedicine, Medical College, Jagiellonian University, Lazarza 16, 31-530 Krakow, Poland","Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, Lojasiewicza 11, 30-348 Krakow, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Telemedicine, Medical College, Jagiellonian University, Lazarza 16, 31-530 Krakow, Poland","institution_ids":["https://openalex.org/I126596746"]},{"raw_affiliation_string":"Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, Lojasiewicza 11, 30-348 Krakow, Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027144155","display_name":"Leszek Konieczny","orcid":null},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Leszek Konieczny","raw_affiliation_strings":["Chair of Medical Biochemistry, Medical College, Jagiellonian University, Kopernika 7, 31-034 Krakow, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair of Medical Biochemistry, Medical College, Jagiellonian University, Kopernika 7, 31-034 Krakow, Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087239926","display_name":"Irena Roterman","orcid":"https://orcid.org/0000-0003-3652-9099"},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Irena Roterman","raw_affiliation_strings":["Department of Bioinformatics and Telemedicine, Medical College, Jagiellonian University, Lazarza 16, 31-530 Krakow, Poland"],"raw_orcid":"https://orcid.org/0000-0003-3652-9099","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Telemedicine, Medical College, Jagiellonian University, Lazarza 16, 31-530 Krakow, Poland","institution_ids":["https://openalex.org/I126596746"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5087239926"],"corresponding_institution_ids":["https://openalex.org/I126596746"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":0.5001,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.61805206,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"12","issue":"2","first_page":"273","last_page":"273"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6279013156890869},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5470342636108398},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.5057878494262695},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4751798212528229},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4692549407482147},{"id":"https://openalex.org/keywords/threading","display_name":"Threading (protein sequence)","score":0.43468227982521057},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4325377941131592},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.41428548097610474},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4123517572879791},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3685208857059479},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2810765504837036},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21543550491333008},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.195591539144516},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1492740511894226}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6279013156890869},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5470342636108398},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.5057878494262695},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4751798212528229},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4692549407482147},{"id":"https://openalex.org/C200307862","wikidata":"https://www.wikidata.org/wiki/Q7797175","display_name":"Threading (protein sequence)","level":3,"score":0.43468227982521057},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4325377941131592},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.41428548097610474},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4123517572879791},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3685208857059479},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2810765504837036},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21543550491333008},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.195591539144516},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1492740511894226},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3390/sym12020273","is_oa":true,"landing_page_url":"https://doi.org/10.3390/sym12020273","pdf_url":"https://www.mdpi.com/2073-8994/12/2/273/pdf?version=1582953141","source":{"id":"https://openalex.org/S190787756","display_name":"Symmetry","issn_l":"2073-8994","issn":["2073-8994"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Symmetry","raw_type":"journal-article"},{"id":"pmh:oai:ruj.uj.edu.pl:item/257446","is_oa":true,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/257446","pdf_url":null,"source":{"id":"https://openalex.org/S4306400316","display_name":"Homo Politicus (Academy of Humanities and Economics in Lodz)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"artyku\u0142 w czasopi\u015bmie"},{"id":"pmh:oai:doaj.org/article:ab4afb6d297843a7aa89c99074db0e52","is_oa":true,"landing_page_url":"https://doaj.org/article/ab4afb6d297843a7aa89c99074db0e52","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Symmetry, Vol 12, Iss 2, p 273 (2020)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/2073-8994/12/2/273/","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3390/sym12020273","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Symmetry","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/sym12020273","is_oa":true,"landing_page_url":"https://doi.org/10.3390/sym12020273","pdf_url":"https://www.mdpi.com/2073-8994/12/2/273/pdf?version=1582953141","source":{"id":"https://openalex.org/S190787756","display_name":"Symmetry","issn_l":"2073-8994","issn":["2073-8994"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Symmetry","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5624552035","display_name":null,"funder_award_id":"N41/DBS/000211","funder_id":"https://openalex.org/F4320310970","funder_display_name":"Uniwersytet Jagiello\u0144ski Collegium Medicum"}],"funders":[{"id":"https://openalex.org/F4320310970","display_name":"Uniwersytet Jagiello\u0144ski Collegium Medicum","ror":"https://ror.org/03bqmcz70"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3006636644.pdf","grobid_xml":"https://content.openalex.org/works/W3006636644.grobid-xml"},"referenced_works_count":68,"referenced_works":["https://openalex.org/W113688923","https://openalex.org/W140486678","https://openalex.org/W151690546","https://openalex.org/W157808733","https://openalex.org/W175377976","https://openalex.org/W216878207","https://openalex.org/W268238884","https://openalex.org/W1965555277","https://openalex.org/W1972040711","https://openalex.org/W1972906822","https://openalex.org/W1973459793","https://openalex.org/W1981904069","https://openalex.org/W1993045239","https://openalex.org/W1993139876","https://openalex.org/W1996964642","https://openalex.org/W1999394429","https://openalex.org/W1999724806","https://openalex.org/W2014050554","https://openalex.org/W2014095962","https://openalex.org/W2015517515","https://openalex.org/W2016785081","https://openalex.org/W2016980160","https://openalex.org/W2021259459","https://openalex.org/W2023095555","https://openalex.org/W2026084778","https://openalex.org/W2026699081","https://openalex.org/W2029633041","https://openalex.org/W2030517878","https://openalex.org/W2041277680","https://openalex.org/W2043628867","https://openalex.org/W2044770225","https://openalex.org/W2045777307","https://openalex.org/W2047115921","https://openalex.org/W2055980695","https://openalex.org/W2058469726","https://openalex.org/W2061762615","https://openalex.org/W2068265376","https://openalex.org/W2068951131","https://openalex.org/W2078626167","https://openalex.org/W2087729059","https://openalex.org/W2088362306","https://openalex.org/W2113635620","https://openalex.org/W2114441129","https://openalex.org/W2114981306","https://openalex.org/W2120634113","https://openalex.org/W2124960473","https://openalex.org/W2155635394","https://openalex.org/W2156954132","https://openalex.org/W2177861138","https://openalex.org/W2242664669","https://openalex.org/W2365745156","https://openalex.org/W2506390494","https://openalex.org/W2558272290","https://openalex.org/W2558795788","https://openalex.org/W2625844510","https://openalex.org/W2748374366","https://openalex.org/W2766125245","https://openalex.org/W2770936674","https://openalex.org/W2791730703","https://openalex.org/W2810170781","https://openalex.org/W2892534126","https://openalex.org/W2900519287","https://openalex.org/W2901048514","https://openalex.org/W2950538451","https://openalex.org/W2960406364","https://openalex.org/W2971836471","https://openalex.org/W4210750801","https://openalex.org/W6682929528"],"related_works":["https://openalex.org/W2052981282","https://openalex.org/W2303656598","https://openalex.org/W4243775915","https://openalex.org/W1741740882","https://openalex.org/W2050330741","https://openalex.org/W2253761889","https://openalex.org/W2123053169","https://openalex.org/W2114568928","https://openalex.org/W2802527233","https://openalex.org/W4206825711"],"abstract_inverted_index":{"Proteins":[0],"with":[1,39,44],"a":[2,12,93,131],"high":[3,45],"degree":[4],"of":[5,37,54,115,130],"sequence":[6,18,46],"similarity":[7],"representing":[8],"different":[9,40,75],"structures":[10,42,80],"provide":[11],"key":[13],"to":[14,99],"understand":[15],"how":[16],"protein":[17],"codes":[19],"for":[20,56],"3D":[21,64,76],"structure.":[22],"An":[23],"analysis":[24],"using":[25,62],"the":[26,70,97,103,109,113,116,124,128,137],"fuzzy":[27],"oil":[28],"drop":[29],"model":[30],"was":[31],"carried":[32],"out":[33],"on":[34],"two":[35],"pairs":[36],"proteins":[38,58],"secondary":[41],"and":[43,84],"identities.":[47],"It":[48,88,119],"has":[49],"been":[50],"shown":[51],"that":[52,92,123],"distributions":[53],"hydrophobicity":[55],"these":[57],"are":[59],"approximated":[60],"well":[61],"single":[63],"Gaussian":[65],"function.":[66],"In":[67],"other":[68],"words,":[69],"similar":[71],"sequences":[72],"fold":[73],"into":[74],"structures,":[77],"however,":[78],"alternative":[79],"also":[81],"have":[82],"symmetric":[83],"monocentric":[85],"hydrophobic":[86],"cores.":[87],"should":[89],"be":[90,121],"noted":[91],"significant":[94],"change":[95],"in":[96,102,108,135],"helical":[98],"beta-structured":[100],"form":[101],"N-terminal":[104],"section":[105],"takes":[106],"places":[107],"fragment":[110],"much":[111],"preceding":[112],"location":[114],"mutated":[117],"regions.":[118],"can":[120],"concluded":[122],"final":[125],"structure":[126],"is":[127],"result":[129],"complicated":[132],"synergy":[133],"effect":[134],"which":[136],"whole":[138],"chain":[139],"participates":[140],"simultaneously.":[141]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2020-02-24T00:00:00"}
