{"id":"https://openalex.org/W24451458","doi":"https://doi.org/10.3390/s140100606","title":"Accelerating Molecular Dynamics Simulations with GPUs","display_name":"Accelerating Molecular Dynamics Simulations with GPUs","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W24451458","doi":"https://doi.org/10.3390/s140100606","mag":"24451458"},"language":"en","primary_location":{"id":"mag:24451458","is_oa":false,"landing_page_url":"https://www.researchgate.net/profile/Vipin_Chaudhary5/publication/220922570_Accelerating_Molecular_Dynamics_Simulations_with_GPUs/links/0c9605189320899ac7000000.pdf","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Sensors (Basel, Switzerland)","raw_type":null},"type":"article","indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023774940","display_name":"John Paul Walters","orcid":"https://orcid.org/0000-0001-5281-6237"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"John Paul Walters","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-5281-6237","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005608968","display_name":"Vidyananth Balu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vidyananth Balu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004523290","display_name":"Vipin Chaudhary","orcid":"https://orcid.org/0000-0001-9672-6225"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vipin Chaudhary","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-9672-6225","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080215947","display_name":"David A. Kofke","orcid":"https://orcid.org/0000-0002-2530-8816"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"David A. Kofke","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-2530-8816","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5021500769","display_name":"Andrew J. Schultz","orcid":"https://orcid.org/0000-0002-1180-0156"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Andrew J. Schultz","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-1180-0156","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.342,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.65647275,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"14","issue":"1","first_page":"44","last_page":"49"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9825999736785889,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.8289869427680969},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7152223587036133},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5903830528259277},{"id":"https://openalex.org/keywords/dynamics","display_name":"Dynamics (music)","score":0.5853891372680664},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.4954003095626831},{"id":"https://openalex.org/keywords/commodity","display_name":"Commodity","score":0.4107685089111328},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2067859172821045},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.20673713088035583},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.10619768500328064}],"concepts":[{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.8289869427680969},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7152223587036133},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5903830528259277},{"id":"https://openalex.org/C145912823","wikidata":"https://www.wikidata.org/wiki/Q113558","display_name":"Dynamics (music)","level":2,"score":0.5853891372680664},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.4954003095626831},{"id":"https://openalex.org/C2779439359","wikidata":"https://www.wikidata.org/wiki/Q317088","display_name":"Commodity","level":2,"score":0.4107685089111328},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2067859172821045},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.20673713088035583},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.10619768500328064},{"id":"https://openalex.org/C34447519","wikidata":"https://www.wikidata.org/wiki/Q179522","display_name":"Market economy","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"mag:24451458","is_oa":false,"landing_page_url":"https://www.researchgate.net/profile/Vipin_Chaudhary5/publication/220922570_Accelerating_Molecular_Dynamics_Simulations_with_GPUs/links/0c9605189320899ac7000000.pdf","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Sensors (Basel, Switzerland)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.564.8017","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.564.8017","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cse.buffalo.edu/~vipin/papers/2008/2008_10.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1595115343","https://openalex.org/W1981021420","https://openalex.org/W2013979082","https://openalex.org/W2032309817","https://openalex.org/W2041902442","https://openalex.org/W2078391824","https://openalex.org/W2099933160","https://openalex.org/W2104557554","https://openalex.org/W2124880437","https://openalex.org/W2153228625","https://openalex.org/W2153603741","https://openalex.org/W2159497832","https://openalex.org/W2170396259"],"related_works":["https://openalex.org/W2273474990","https://openalex.org/W2942889744","https://openalex.org/W2753245778","https://openalex.org/W67984273","https://openalex.org/W2618050489","https://openalex.org/W2611653652","https://openalex.org/W2019233204","https://openalex.org/W2070275046","https://openalex.org/W146940060","https://openalex.org/W2625535286","https://openalex.org/W128602960","https://openalex.org/W2784827262","https://openalex.org/W249493014","https://openalex.org/W2989250091","https://openalex.org/W1995660477","https://openalex.org/W2615278019","https://openalex.org/W2142485291","https://openalex.org/W2318897954","https://openalex.org/W228716691","https://openalex.org/W2102927018"],"abstract_inverted_index":{"During":[0],"the":[1,4,53,57,71,76,93,111,125,130,137,154,160,175,180],"last":[2],"years,":[3],"use":[5],"of":[6,62,73,92,114,124,142,146,174,190],"Portable":[7],"Coordinate":[8],"Measuring":[9],"Machines":[10],"(PCMMs)":[11],"in":[12,56,86,101,163],"industry":[13],"has":[14,47],"increased":[15],"considerably,":[16],"mostly":[17],"due":[18],"to":[19,38,128,134,152,171,185],"their":[20,30,45,63],"flexibility":[21],"for":[22],"accomplishing":[23],"in-line":[24],"measuring":[25,41,77,95,161],"tasks":[26],"as":[27,29,36],"well":[28],"reduced":[31],"costs":[32],"and":[33,59,104,133,140,158,182],"operational":[34],"advantages":[35],"compared":[37],"traditional":[39],"coordinate":[40],"machines":[42],"(CMMs).":[43],"However,":[44],"operation":[46],"a":[48,80,165],"significant":[49],"drawback":[50],"derived":[51],"from":[52,79],"techniques":[54,67],"applied":[55],"verification":[58,106,141],"optimization":[60],"procedures":[61,145],"kinematic":[64],"parameters.":[65],"These":[66],"are":[68],"based":[69],"on":[70],"capture":[72],"data":[74],"with":[75],"instrument":[78,94,162,176],"calibrated":[81,155],"gauge":[82,156],"object,":[83],"fixed":[84],"successively":[85],"various":[87],"positions":[88],"so":[89],"that":[90,167],"most":[91,173],"volume":[96],"is":[97,120,127,169],"covered,":[98],"which":[99],"results":[100],"time-consuming,":[102],"tedious":[103],"expensive":[105],"procedures.":[107,191],"In":[108],"this":[109],"work":[110],"mechanical":[112],"design":[113],"an":[115],"indexed":[116],"metrology":[117],"platform":[118],"(IMP)":[119],"presented.":[121],"The":[122,148],"aim":[123],"IMP":[126,149],"increase":[129],"final":[131],"accuracy":[132],"radically":[135],"simplify":[136],"calibration,":[138],"identification":[139],"geometrical":[143],"parameter":[144],"PCMMs.":[147],"allows":[150],"us":[151],"fix":[153],"object":[157],"move":[159],"such":[164],"way":[166],"it":[168],"possible":[170],"cover":[172],"working":[177],"volume,":[178],"reducing":[179],"time":[181],"operator":[183],"fatigue":[184],"carry":[186],"out":[187],"these":[188],"types":[189]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2025-07-23T07:11:37.172424","created_date":"2016-06-24T00:00:00"}
