{"id":"https://openalex.org/W4405496046","doi":"https://doi.org/10.3390/rs16244720","title":"A 3D Surface Reconstruction Pipeline for Plant Phenotyping","display_name":"A 3D Surface Reconstruction Pipeline for Plant Phenotyping","publication_year":2024,"publication_date":"2024-12-17","ids":{"openalex":"https://openalex.org/W4405496046","doi":"https://doi.org/10.3390/rs16244720"},"language":"en","primary_location":{"id":"doi:10.3390/rs16244720","is_oa":true,"landing_page_url":"https://doi.org/10.3390/rs16244720","pdf_url":"https://www.mdpi.com/2072-4292/16/24/4720/pdf?version=1734448305","source":{"id":"https://openalex.org/S43295729","display_name":"Remote Sensing","issn_l":"2072-4292","issn":["2072-4292"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Remote Sensing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2072-4292/16/24/4720/pdf?version=1734448305","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114655709","display_name":"Lina Stausberg","orcid":null},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lina Stausberg","raw_affiliation_strings":["Institute of Geodesy and Geoinformation, Department of Geodesy, University of Bonn, Nussallee 17, 53115 Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Geodesy and Geoinformation, Department of Geodesy, University of Bonn, Nussallee 17, 53115 Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062417103","display_name":"Berit Jost","orcid":null},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Berit Jost","raw_affiliation_strings":["Institute of Geodesy and Geoinformation, Department of Geodesy, University of Bonn, Nussallee 17, 53115 Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Geodesy and Geoinformation, Department of Geodesy, University of Bonn, Nussallee 17, 53115 Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048316690","display_name":"Lasse Klingbeil","orcid":"https://orcid.org/0000-0002-1941-150X"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Lasse Klingbeil","raw_affiliation_strings":["Institute of Geodesy and Geoinformation, Department of Geodesy, University of Bonn, Nussallee 17, 53115 Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Geodesy and Geoinformation, Department of Geodesy, University of Bonn, Nussallee 17, 53115 Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071453769","display_name":"Heiner Kuhlmann","orcid":"https://orcid.org/0009-0004-9758-7721"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Heiner Kuhlmann","raw_affiliation_strings":["Institute of Geodesy and Geoinformation, Department of Geodesy, University of Bonn, Nussallee 17, 53115 Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Geodesy and Geoinformation, Department of Geodesy, University of Bonn, Nussallee 17, 53115 Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5048316690"],"corresponding_institution_ids":["https://openalex.org/I135140700"],"apc_list":{"value":2500,"currency":"CHF","value_usd":2707},"apc_paid":{"value":2500,"currency":"CHF","value_usd":2707},"fwci":1.6131,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.82232681,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"16","issue":"24","first_page":"4720","last_page":"4720"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11164","display_name":"Remote Sensing and LiDAR Applications","score":0.9606999754905701,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11164","display_name":"Remote Sensing and LiDAR Applications","score":0.9606999754905701,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.9391999840736389,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.496429979801178},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.370696485042572},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.34031903743743896}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.496429979801178},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.370696485042572},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.34031903743743896},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3390/rs16244720","is_oa":true,"landing_page_url":"https://doi.org/10.3390/rs16244720","pdf_url":"https://www.mdpi.com/2072-4292/16/24/4720/pdf?version=1734448305","source":{"id":"https://openalex.org/S43295729","display_name":"Remote Sensing","issn_l":"2072-4292","issn":["2072-4292"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Remote Sensing","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:eb2dceef7c7442068c103d2bb720617e","is_oa":true,"landing_page_url":"https://doaj.org/article/eb2dceef7c7442068c103d2bb720617e","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Remote Sensing, Vol 16, Iss 24, p 4720 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/rs16244720","is_oa":true,"landing_page_url":"https://doi.org/10.3390/rs16244720","pdf_url":"https://www.mdpi.com/2072-4292/16/24/4720/pdf?version=1734448305","source":{"id":"https://openalex.org/S43295729","display_name":"Remote Sensing","issn_l":"2072-4292","issn":["2072-4292"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Remote Sensing","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G1693277229","display_name":null,"funder_award_id":"EXC 2070-390732324","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G3109397799","display_name":null,"funder_award_id":"EXC 2070","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G5106512922","display_name":null,"funder_award_id":"Deutsche Forschungsgemeinschaft (DFG","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6637089785","display_name":null,"funder_award_id":"390732324","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8643545268","display_name":null,"funder_award_id":"2070-390732324","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4405496046.pdf","grobid_xml":"https://content.openalex.org/works/W4405496046.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1852253147","https://openalex.org/W1882610713","https://openalex.org/W1910619957","https://openalex.org/W1967688818","https://openalex.org/W1971169262","https://openalex.org/W1976478513","https://openalex.org/W1977572223","https://openalex.org/W1985870845","https://openalex.org/W2002386777","https://openalex.org/W2064341623","https://openalex.org/W2079017595","https://openalex.org/W2086330580","https://openalex.org/W2104095591","https://openalex.org/W2104899053","https://openalex.org/W2119823327","https://openalex.org/W2121535648","https://openalex.org/W2123860443","https://openalex.org/W2147967872","https://openalex.org/W2163605009","https://openalex.org/W2172014587","https://openalex.org/W2186222003","https://openalex.org/W2426271458","https://openalex.org/W2436494909","https://openalex.org/W2472269140","https://openalex.org/W2513623548","https://openalex.org/W2596046624","https://openalex.org/W2755902582","https://openalex.org/W2789858607","https://openalex.org/W2797338994","https://openalex.org/W2910548214","https://openalex.org/W2913226607","https://openalex.org/W2979581430","https://openalex.org/W2979635984","https://openalex.org/W3004730767","https://openalex.org/W3117098906","https://openalex.org/W3134385809","https://openalex.org/W3142649732","https://openalex.org/W3182022271","https://openalex.org/W4239358033","https://openalex.org/W6605304823","https://openalex.org/W6712992457","https://openalex.org/W6748008431","https://openalex.org/W6757290309","https://openalex.org/W6873867282","https://openalex.org/W6922453842"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2324615561","https://openalex.org/W2086120259","https://openalex.org/W2390279801","https://openalex.org/W2245170124","https://openalex.org/W2076393078","https://openalex.org/W4391913857","https://openalex.org/W2358668433"],"abstract_inverted_index":{"Plant":[0],"phenotyping":[1],"plays":[2],"a":[3,230,233,239,273],"crucial":[4],"role":[5],"in":[6,120],"crop":[7],"science":[8],"and":[9,18,34,46,93,101,149,211,217,238,286,299,309],"plant":[10,54,76,259],"breeding.":[11],"However,":[12],"traditional":[13],"methods":[14,38],"often":[15],"involve":[16],"time-consuming":[17],"manual":[19],"observations.":[20],"Therefore,":[21],"it":[22],"is":[23,109,127,303,310],"essential":[24],"to":[25,70,73,81,97,110,146,213,250,265,293],"develop":[26],"automated,":[27],"sensor-driven":[28],"techniques":[29],"that":[30,78],"can":[31],"provide":[32],"objective":[33],"rapid":[35],"information.":[36],"Various":[37],"rely":[39],"on":[40,165,171,181,305],"camera":[41],"systems,":[42],"including":[43],"RGB,":[44],"multi-spectral,":[45],"hyper-spectral":[47],"cameras,":[48],"which":[49,133,179],"offer":[50],"valuable":[51],"insights":[52],"into":[53,154,195],"physiology.":[55],"In":[56,158,272],"recent":[57],"years,":[58],"3D":[59,122],"sensing":[60],"systems":[61],"such":[62,206,278],"as":[63,207,279],"laser":[64,235],"scanners":[65],"have":[66],"gained":[67],"popularity":[68],"due":[69],"their":[71,155],"ability":[72],"capture":[74],"structural":[75],"parameters":[77],"are":[79,90],"difficult":[80],"obtain":[82],"using":[83,115,226],"spectral":[84],"sensors.":[85],"Unlike":[86],"images,":[87],"point":[88,131,142,193],"clouds":[89,143,194],"not":[91,163],"structured":[92],"require":[94],"pre-processing":[95,129,174,204],"steps":[96,205],"extract":[98],"precise":[99],"information":[100],"handle":[102],"noise":[103,137],"or":[104],"missing":[105],"points.":[106],"One":[107],"approach":[108],"generate":[111],"mesh-based":[112],"surface":[113,123,196],"representations":[114],"triangulation.":[116],"A":[117],"key":[118],"challenge":[119],"the":[121,128,139,166,172,182,215,220,267,270,296,306],"reconstruction":[124],"of":[125,130,198,219,269],"plants":[126,153],"clouds,":[132],"involves":[134],"removing":[135],"non-plant":[136],"from":[138,144,246],"scene,":[140],"segmenting":[141],"populations":[145],"individual":[147,152],"plants,":[148],"further":[150,294],"dividing":[151],"respective":[156],"organs.":[157],"this":[159],"study,":[160],"we":[161],"will":[162],"focus":[164],"segmentation":[167],"aspect":[168],"but":[169],"rather":[170],"other":[173],"steps,":[175],"like":[176],"denoising":[177],"parameters,":[178],"depend":[180],"data":[183],"type.":[184],"We":[185],"present":[186],"an":[187],"automated":[188],"pipeline":[189,201,302],"for":[190],"converting":[191],"high-resolution":[192],"models":[197],"plants.":[199],"The":[200,254,301],"incorporates":[202],"additional":[203],"outlier":[208],"removal,":[209],"denoising,":[210],"subsampling":[212],"ensure":[214],"accuracy":[216],"quality":[218],"reconstructed":[221],"surfaces.":[222],"Data":[223],"were":[224,291],"collected":[225],"three":[227],"different":[228,258],"sensors:":[229],"handheld":[231],"scanner,":[232],"terrestrial":[234],"scanner":[236],"(TLS),":[237],"mobile":[240],"mapping":[241],"platform,":[242],"under":[243],"varying":[244],"conditions":[245],"controlled":[247],"laboratory":[248],"environments":[249],"complex":[251],"field":[252],"settings.":[253],"investigation":[255],"includes":[256],"five":[257],"species,":[260],"each":[261],"with":[262],"distinct":[263],"characteristics,":[264],"demonstrate":[266],"potential":[268,298],"pipeline.":[271],"next":[274],"step,":[275],"phenotypic":[276],"traits":[277],"leaf":[280,282,287],"area,":[281],"area":[283],"index":[284],"(LAI),":[285],"angle":[288],"distribution":[289],"(LAD)":[290],"calculated":[292],"illustrate":[295],"pipeline\u2019s":[297],"effectiveness.":[300],"based":[304],"Open3D":[307],"framework":[308],"available":[311],"open":[312],"source.":[313]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":4}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
