{"id":"https://openalex.org/W4286587817","doi":"https://doi.org/10.3390/jimaging8080204","title":"Lung Volume Calculation in Preclinical MicroCT: A Fast Geometrical Approach","display_name":"Lung Volume Calculation in Preclinical MicroCT: A Fast Geometrical Approach","publication_year":2022,"publication_date":"2022-07-22","ids":{"openalex":"https://openalex.org/W4286587817","doi":"https://doi.org/10.3390/jimaging8080204","pmid":"https://pubmed.ncbi.nlm.nih.gov/35893082"},"language":"en","primary_location":{"id":"doi:10.3390/jimaging8080204","is_oa":true,"landing_page_url":"https://doi.org/10.3390/jimaging8080204","pdf_url":"https://www.mdpi.com/2313-433X/8/8/204/pdf?version=1658483711","source":{"id":"https://openalex.org/S2736465063","display_name":"Journal of Imaging","issn_l":"2313-433X","issn":["2313-433X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Imaging","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2313-433X/8/8/204/pdf?version=1658483711","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072652305","display_name":"Juan A. C\u00e1mara","orcid":"https://orcid.org/0000-0001-7494-1127"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Juan Antonio Camara","raw_affiliation_strings":["Preclinical Therapeutics Core, University of California San Francisco, San Francisco, CA 94158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Preclinical Therapeutics Core, University of California San Francisco, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067566501","display_name":"Anna Pujol","orcid":"https://orcid.org/0000-0002-8299-3880"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Anna Pujol","raw_affiliation_strings":["Onna Therapeutics, 08028 Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0002-8299-3880","affiliations":[{"raw_affiliation_string":"Onna Therapeutics, 08028 Barcelona, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010169168","display_name":"J. Jim\u00e9nez","orcid":"https://orcid.org/0000-0001-6079-332X"},"institutions":[{"id":"https://openalex.org/I4210102407","display_name":"Vall d'Hebron Institut de Recerca","ror":"https://ror.org/01d5vx451","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210102407","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Juan Jose Jimenez","raw_affiliation_strings":["Preclinical Imaging Platform, Vall d\u2019Hebron Institute of Research, 08035 Barcelona, Spain","Preclinical Imaging Platform, Vall d'Hebron Institute of Research, 08035 Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Preclinical Imaging Platform, Vall d\u2019Hebron Institute of Research, 08035 Barcelona, Spain","institution_ids":["https://openalex.org/I4210102407"]},{"raw_affiliation_string":"Preclinical Imaging Platform, Vall d'Hebron Institute of Research, 08035 Barcelona, Spain","institution_ids":["https://openalex.org/I4210102407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044866724","display_name":"Jaime Donate","orcid":null},"institutions":[{"id":"https://openalex.org/I4210102407","display_name":"Vall d'Hebron Institut de Recerca","ror":"https://ror.org/01d5vx451","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210102407","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jaime Donate","raw_affiliation_strings":["Preclinical Imaging Platform, Vall d\u2019Hebron Institute of Research, 08035 Barcelona, Spain","Preclinical Imaging Platform, Vall d'Hebron Institute of Research, 08035 Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Preclinical Imaging Platform, Vall d\u2019Hebron Institute of Research, 08035 Barcelona, Spain","institution_ids":["https://openalex.org/I4210102407"]},{"raw_affiliation_string":"Preclinical Imaging Platform, Vall d'Hebron Institute of Research, 08035 Barcelona, Spain","institution_ids":["https://openalex.org/I4210102407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025641092","display_name":"Marina Ferrer","orcid":"https://orcid.org/0000-0003-4293-7558"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marina Ferrer","raw_affiliation_strings":["Gnotobiotics Core Facility, University of California San Francisco, San Francisco, CA 94158, USA"],"raw_orcid":"https://orcid.org/0000-0003-4293-7558","affiliations":[{"raw_affiliation_string":"Gnotobiotics Core Facility, University of California San Francisco, San Francisco, CA 94158, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061589261","display_name":"Greetje Vande Velde","orcid":"https://orcid.org/0000-0002-5633-3993"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Greetje Vande Velde","raw_affiliation_strings":["Biomedical MRI/MoSAIC, Department of Imaging and Pathology, Faculty of Medicine, KU Leuven, 3001 Leuven, Belgium"],"raw_orcid":"https://orcid.org/0000-0002-5633-3993","affiliations":[{"raw_affiliation_string":"Biomedical MRI/MoSAIC, Department of Imaging and Pathology, Faculty of Medicine, KU Leuven, 3001 Leuven, Belgium","institution_ids":["https://openalex.org/I99464096"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5072652305"],"corresponding_institution_ids":["https://openalex.org/I180670191"],"apc_list":{"value":1600,"currency":"CHF","value_usd":1732},"apc_paid":{"value":1600,"currency":"CHF","value_usd":1732},"fwci":0.1437,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.46411742,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"8","issue":"8","first_page":"204","last_page":"204"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10202","display_name":"Lung Cancer Diagnosis and Treatment","score":0.980400025844574,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lung","display_name":"Lung","score":0.7125752568244934},{"id":"https://openalex.org/keywords/lung-volumes","display_name":"Lung volumes","score":0.6464747786521912},{"id":"https://openalex.org/keywords/volume","display_name":"Volume (thermodynamics)","score":0.6459981799125671},{"id":"https://openalex.org/keywords/gold-standard","display_name":"Gold standard (test)","score":0.5698788166046143},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.5098139643669128},{"id":"https://openalex.org/keywords/lung-cancer","display_name":"Lung cancer","score":0.4879002273082733},{"id":"https://openalex.org/keywords/nuclear-medicine","display_name":"Nuclear medicine","score":0.40027517080307007},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.3335971236228943},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.2893683612346649},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.10005122423171997},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.06352207064628601}],"concepts":[{"id":"https://openalex.org/C2777714996","wikidata":"https://www.wikidata.org/wiki/Q7886","display_name":"Lung","level":2,"score":0.7125752568244934},{"id":"https://openalex.org/C27101514","wikidata":"https://www.wikidata.org/wiki/Q206120","display_name":"Lung volumes","level":3,"score":0.6464747786521912},{"id":"https://openalex.org/C20556612","wikidata":"https://www.wikidata.org/wiki/Q4469374","display_name":"Volume (thermodynamics)","level":2,"score":0.6459981799125671},{"id":"https://openalex.org/C40993552","wikidata":"https://www.wikidata.org/wiki/Q514654","display_name":"Gold standard (test)","level":2,"score":0.5698788166046143},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.5098139643669128},{"id":"https://openalex.org/C2776256026","wikidata":"https://www.wikidata.org/wiki/Q47912","display_name":"Lung cancer","level":2,"score":0.4879002273082733},{"id":"https://openalex.org/C2989005","wikidata":"https://www.wikidata.org/wiki/Q214963","display_name":"Nuclear medicine","level":1,"score":0.40027517080307007},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.3335971236228943},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.2893683612346649},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.10005122423171997},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.06352207064628601},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3390/jimaging8080204","is_oa":true,"landing_page_url":"https://doi.org/10.3390/jimaging8080204","pdf_url":"https://www.mdpi.com/2313-433X/8/8/204/pdf?version=1658483711","source":{"id":"https://openalex.org/S2736465063","display_name":"Journal of Imaging","issn_l":"2313-433X","issn":["2313-433X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Imaging","raw_type":"journal-article"},{"id":"pmid:35893082","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35893082","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of imaging","raw_type":null},{"id":"pmh:oai:lirias2repo.kuleuven.be:20.500.12942/703907","is_oa":true,"landing_page_url":"https://lirias.kuleuven.be/handle/20.500.12942/703907","pdf_url":null,"source":{"id":"https://openalex.org/S7407055369","display_name":"Lirias","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Journal of Imaging, vol. 8 (8), Art.No. ARTN 204","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:152fdf3faf7343d688156fe8201028db","is_oa":true,"landing_page_url":"https://doaj.org/article/152fdf3faf7343d688156fe8201028db","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Imaging, Vol 8, Iss 8, p 204 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9330811","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9330811","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Imaging","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/jimaging8080204","is_oa":true,"landing_page_url":"https://doi.org/10.3390/jimaging8080204","pdf_url":"https://www.mdpi.com/2313-433X/8/8/204/pdf?version=1658483711","source":{"id":"https://openalex.org/S2736465063","display_name":"Journal of Imaging","issn_l":"2313-433X","issn":["2313-433X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Imaging","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5099999904632568,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4286587817.pdf","grobid_xml":"https://content.openalex.org/works/W4286587817.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1607794224","https://openalex.org/W1772605819","https://openalex.org/W1812394418","https://openalex.org/W1964333485","https://openalex.org/W1980703969","https://openalex.org/W1984119766","https://openalex.org/W1999987275","https://openalex.org/W2000419837","https://openalex.org/W2022556943","https://openalex.org/W2032045228","https://openalex.org/W2045763873","https://openalex.org/W2082833890","https://openalex.org/W2136613707","https://openalex.org/W2158923349","https://openalex.org/W2273554450","https://openalex.org/W2290562273","https://openalex.org/W2317539605","https://openalex.org/W2407649233","https://openalex.org/W2471801596","https://openalex.org/W2510754036","https://openalex.org/W2743688906","https://openalex.org/W2793164428","https://openalex.org/W2889615630","https://openalex.org/W2916412824","https://openalex.org/W2933170392","https://openalex.org/W2955303891","https://openalex.org/W2973529716","https://openalex.org/W2978438999","https://openalex.org/W2990762227","https://openalex.org/W2991445765","https://openalex.org/W2991489244","https://openalex.org/W3001531511","https://openalex.org/W3010056566","https://openalex.org/W3027530322","https://openalex.org/W3041656643","https://openalex.org/W3043621140","https://openalex.org/W3096513751","https://openalex.org/W3105377607","https://openalex.org/W4200473853","https://openalex.org/W6714265120"],"related_works":["https://openalex.org/W832193342","https://openalex.org/W1987850981","https://openalex.org/W2798121181","https://openalex.org/W2016805743","https://openalex.org/W2039438337","https://openalex.org/W2258875363","https://openalex.org/W2991271660","https://openalex.org/W2150701667","https://openalex.org/W2033458651","https://openalex.org/W2884673950"],"abstract_inverted_index":{"In":[0,76,127],"this":[1,29,184],"study,":[2],"we":[3],"present":[4],"a":[5,13],"time-efficient":[6],"protocol":[7,107,185],"for":[8,15,61,186],"thoracic":[9,30,36,79,131],"volume":[10,23,37,68,80,87,94,101,163,188],"calculation":[11,189],"as":[12,49],"proxy":[14],"total":[16],"lung":[17,22,44,65,86,93,100,115,122,151,162,187],"volume.":[18,31,66],"We":[19,32],"hypothesize":[20],"that":[21],"can":[24],"be":[25],"calculated":[26],"indirectly":[27],"from":[28],"compared":[33,70],"the":[34,50,63,72,106,180],"measured":[35],"with":[38,46,71],"manually":[39,84],"segmented":[40],"and":[41,59,90,119,124,137,146,157,168],"automatically":[42],"thresholded":[43,91],"volumes,":[45],"manual":[47],"segmentation":[48],"gold":[51,73],"standard.":[52],"A":[53],"linear":[54],"regression":[55],"formula":[56],"was":[57,69,81,102,108],"obtained":[58],"used":[60],"calculating":[62],"theoretical":[64],"This":[67,178],"standard":[74],"volumes.":[75,177],"healthy":[77],"animals,":[78,130],"887.45":[82],"mm3,":[83,135,148,155,159],"delineated":[85,141],"554.33":[88],"mm3":[89,96],"aerated":[92],"495.38":[95],"on":[97],"average.":[98],"Theoretical":[99,161],"554.30":[103],"mm3.":[104,139,170],"Finally,":[105],"applied":[109],"to":[110],"three":[111],"animal":[112],"models":[113],"of":[114,183],"pathology":[116],"(lung":[117],"metastasis":[118],"transgenic":[120],"primary":[121],"tumor":[123],"fungal":[125],"infection).":[126],"confirmed":[128,179],"pathologic":[129,191],"volumes":[132,142,152],"were:":[133],"893.20":[134],"860.12":[136],"1027.28":[138],"Manually":[140],"were":[143,153,174],"640.58,":[144],"503.91":[145],"882.42":[147],"respectively.":[149,160],"Thresholded":[150],"315.92":[154],"408.72":[156],"236":[158],"resulted":[164],"in":[165,190],"635.28,":[166],"524.30":[167],"863.10.42":[169],"No":[171],"significant":[172],"differences":[173],"observed":[175],"between":[176],"potential":[181],"use":[182],"models.":[192]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
