{"id":"https://openalex.org/W3125645017","doi":"https://doi.org/10.3390/jimaging7020016","title":"Testing Segmentation Popular Loss and Variations in Three Multiclass Medical Imaging Problems","display_name":"Testing Segmentation Popular Loss and Variations in Three Multiclass Medical Imaging Problems","publication_year":2021,"publication_date":"2021-01-27","ids":{"openalex":"https://openalex.org/W3125645017","doi":"https://doi.org/10.3390/jimaging7020016","mag":"3125645017","pmid":"https://pubmed.ncbi.nlm.nih.gov/34460615"},"language":"en","primary_location":{"id":"doi:10.3390/jimaging7020016","is_oa":true,"landing_page_url":"https://doi.org/10.3390/jimaging7020016","pdf_url":"https://www.mdpi.com/2313-433X/7/2/16/pdf?version=1611815141","source":{"id":"https://openalex.org/S2736465063","display_name":"Journal of Imaging","issn_l":"2313-433X","issn":["2313-433X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Imaging","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2313-433X/7/2/16/pdf?version=1611815141","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049382757","display_name":"Pedro Furtado","orcid":"https://orcid.org/0000-0001-6054-637X"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Pedro Furtado","raw_affiliation_strings":["Dei/FCT/CISUC, University of Coimbra, Polo II, 3030-290 Coimbra, Portugal"],"affiliations":[{"raw_affiliation_string":"Dei/FCT/CISUC, University of Coimbra, Polo II, 3030-290 Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5049382757"],"corresponding_institution_ids":["https://openalex.org/I76903346"],"apc_list":{"value":1600,"currency":"CHF","value_usd":1732},"apc_paid":{"value":1600,"currency":"CHF","value_usd":1732},"fwci":1.5259,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.81821924,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"7","issue":"2","first_page":"16","last_page":"16"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11438","display_name":"Retinal Imaging and Analysis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11438","display_name":"Retinal Imaging and Analysis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.8217198848724365},{"id":"https://openalex.org/keywords/dice","display_name":"Dice","score":0.816981315612793},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7390493750572205},{"id":"https://openalex.org/keywords/cross-entropy","display_name":"Cross entropy","score":0.6981172561645508},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.6175081133842468},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6141079068183899},{"id":"https://openalex.org/keywords/magnetic-resonance-imaging","display_name":"Magnetic resonance imaging","score":0.5624473690986633},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5100434422492981},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.47992023825645447},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.46113502979278564},{"id":"https://openalex.org/keywords/entropy","display_name":"Entropy (arrow of time)","score":0.4425562620162964},{"id":"https://openalex.org/keywords/s\u00f8rensen\u2013dice-coefficient","display_name":"S\u00f8rensen\u2013Dice coefficient","score":0.412083238363266},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2728203535079956},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.17908737063407898},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1595526933670044},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.10389944911003113},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.07507103681564331}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.8217198848724365},{"id":"https://openalex.org/C22029948","wikidata":"https://www.wikidata.org/wiki/Q45089","display_name":"Dice","level":2,"score":0.816981315612793},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7390493750572205},{"id":"https://openalex.org/C167981619","wikidata":"https://www.wikidata.org/wiki/Q1685498","display_name":"Cross entropy","level":3,"score":0.6981172561645508},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.6175081133842468},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6141079068183899},{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.5624473690986633},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5100434422492981},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.47992023825645447},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.46113502979278564},{"id":"https://openalex.org/C106301342","wikidata":"https://www.wikidata.org/wiki/Q4117933","display_name":"Entropy (arrow of time)","level":2,"score":0.4425562620162964},{"id":"https://openalex.org/C163892561","wikidata":"https://www.wikidata.org/wiki/Q2613728","display_name":"S\u00f8rensen\u2013Dice coefficient","level":4,"score":0.412083238363266},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2728203535079956},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.17908737063407898},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1595526933670044},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.10389944911003113},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.07507103681564331},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3390/jimaging7020016","is_oa":true,"landing_page_url":"https://doi.org/10.3390/jimaging7020016","pdf_url":"https://www.mdpi.com/2313-433X/7/2/16/pdf?version=1611815141","source":{"id":"https://openalex.org/S2736465063","display_name":"Journal of Imaging","issn_l":"2313-433X","issn":["2313-433X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Imaging","raw_type":"journal-article"},{"id":"pmid:34460615","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34460615","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of imaging","raw_type":null},{"id":"pmh:oai:doaj.org/article:41272bf384fc4e32b6e5c6b91f727f5c","is_oa":true,"landing_page_url":"https://doaj.org/article/41272bf384fc4e32b6e5c6b91f727f5c","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Imaging, Vol 7, Iss 2, p 16 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8321275","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8321275","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Imaging","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/jimaging7020016","is_oa":true,"landing_page_url":"https://doi.org/10.3390/jimaging7020016","pdf_url":"https://www.mdpi.com/2313-433X/7/2/16/pdf?version=1611815141","source":{"id":"https://openalex.org/S2736465063","display_name":"Journal of Imaging","issn_l":"2313-433X","issn":["2313-433X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Imaging","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3125645017.pdf","grobid_xml":"https://content.openalex.org/works/W3125645017.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W288721753","https://openalex.org/W1504916455","https://openalex.org/W1762163599","https://openalex.org/W1884191083","https://openalex.org/W1901129140","https://openalex.org/W1903029394","https://openalex.org/W1954647394","https://openalex.org/W2010099973","https://openalex.org/W2194775991","https://openalex.org/W2198098822","https://openalex.org/W2323200062","https://openalex.org/W2344912502","https://openalex.org/W2412782625","https://openalex.org/W2512148493","https://openalex.org/W2524644797","https://openalex.org/W2538673204","https://openalex.org/W2551560790","https://openalex.org/W2555096873","https://openalex.org/W2560725027","https://openalex.org/W2588169811","https://openalex.org/W2592929672","https://openalex.org/W2594405495","https://openalex.org/W2619004901","https://openalex.org/W2626711511","https://openalex.org/W2685298434","https://openalex.org/W2727753969","https://openalex.org/W2752123644","https://openalex.org/W2792023360","https://openalex.org/W2793923128","https://openalex.org/W2799142782","https://openalex.org/W2805381319","https://openalex.org/W2828862258","https://openalex.org/W2894315883","https://openalex.org/W2904834800","https://openalex.org/W2923235827","https://openalex.org/W2945683845","https://openalex.org/W2951316302","https://openalex.org/W2951934944","https://openalex.org/W2952436003","https://openalex.org/W2952593890","https://openalex.org/W2963298074","https://openalex.org/W2964098128","https://openalex.org/W3002569343","https://openalex.org/W3003076994","https://openalex.org/W3023609596","https://openalex.org/W3038091703","https://openalex.org/W3047439539","https://openalex.org/W3103014197","https://openalex.org/W3112139896","https://openalex.org/W3162505601","https://openalex.org/W6700748039"],"related_works":["https://openalex.org/W4402926319","https://openalex.org/W4389060404","https://openalex.org/W2973136608","https://openalex.org/W3012828488","https://openalex.org/W4286233748","https://openalex.org/W4254054209","https://openalex.org/W4391935352","https://openalex.org/W2952835238","https://openalex.org/W3082625452","https://openalex.org/W4200334192"],"abstract_inverted_index":{"Image":[0],"structures":[1,50,210],"are":[2,20,230],"segmented":[3],"automatically":[4],"using":[5],"deep":[6],"learning":[7],"(DL)":[8],"for":[9],"analysis":[10],"and":[11,26,74,87,112,122,179,244,252],"processing.":[12],"The":[13],"three":[14,54],"most":[15],"popular":[16],"base":[17],"loss":[18,85,105,218],"functions":[19,86],"cross":[21,140],"entropy":[22,141],"(crossE),":[23],"intersect-over-the-union":[24],"(IoU),":[25],"dice.":[27],"Which":[28],"should":[29],"be":[30],"used,":[31],"is":[32,106,233,236],"it":[33,235],"useful":[34],"to":[35,133,148,165,183,207,225,241,245],"consider":[36],"simple":[37],"variations,":[38,88],"such":[39],"as":[40,89,91],"modifying":[41],"formula":[42,152],"coefficients?":[43],"How":[44],"do":[45],"characteristics":[46],"of":[47,61,94,102],"different":[48,55,95,167,247],"image":[49,57],"influence":[51],"scores?":[52],"Taking":[53],"medical":[56],"segmentation":[58,92,191,196],"problems":[59],"(segmentation":[60],"organs":[62],"in":[63,69,78,127,197],"magnetic":[64],"resonance":[65],"images":[66,72,81],"(MRI),":[67],"liver":[68],"computer":[70],"tomography":[71],"(CT)":[73],"diabetic":[75],"retinopathy":[76],"lesions":[77,203],"eye":[79],"fundus":[80],"(EFI)),":[82],"we":[83,110,116],"quantify":[84],"well":[90],"scores":[93,222],"targets.":[96],"We":[97],"first":[98],"describe":[99,111],"the":[100,157,162],"limitations":[101],"metrics,":[103],"since":[104],"a":[107],"metric,":[108],"then":[109],"test":[113,246],"alternatives.":[114],"Experimentally,":[115],"observed":[117],"that":[118,231],"DeeplabV3":[119],"outperforms":[120],"UNet":[121],"fully":[123],"convolutional":[124],"network":[125],"(FCN)":[126],"all":[128,143],"datasets.":[129],"Dice":[130],"scored":[131,192],"1":[132],"6":[134,188,224],"percentage":[135],"points":[136],"(pp)":[137],"higher":[138,193],"than":[139,194],"over":[142],"datasets,":[144],"IoU":[145],"improved":[146,154,174,185],"0":[147,239],"3":[149],"pp.":[150,189,201,227],"Varying":[151],"coefficients":[153],"scores,":[155],"but":[156,217],"best":[158],"choices":[159],"depend":[160],"on":[161,249],"dataset:":[163],"compared":[164,206],"crossE,":[166],"false":[168,171,250,253],"positive":[169],"vs.":[170],"negative":[172],"weights":[173,248],"MRI":[175,198],"by":[176,187,199],"12":[177],"pp,":[178],"assigning":[180,238],"zero":[181],"weight":[182,240],"background":[184,243],"EFI":[186,202],"Multiclass":[190],"n-uniclass":[195],"8":[200],"score":[204],"low":[205],"more":[208],"constant":[209],"(e.g.,":[211],"optic":[212],"disk":[213],"or":[214],"even":[215],"organs),":[216],"modifications":[219],"improve":[220],"those":[221],"significantly":[223],"9":[226],"Our":[228],"conclusions":[229],"dice":[232],"best,":[234],"worth":[237],"class":[242],"positives":[251],"negatives.":[254]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
