{"id":"https://openalex.org/W2991423394","doi":"https://doi.org/10.3390/jimaging5120088","title":"Software-Based Three-Dimensional Deconvolution Microscopy of Cytoskeletal Proteins in Cultured Fibroblast Using Open-Source Software and Open Hardware","display_name":"Software-Based Three-Dimensional Deconvolution Microscopy of Cytoskeletal Proteins in Cultured Fibroblast Using Open-Source Software and Open Hardware","publication_year":2019,"publication_date":"2019-11-23","ids":{"openalex":"https://openalex.org/W2991423394","doi":"https://doi.org/10.3390/jimaging5120088","mag":"2991423394","pmid":"https://pubmed.ncbi.nlm.nih.gov/34460602"},"language":"en","primary_location":{"id":"doi:10.3390/jimaging5120088","is_oa":true,"landing_page_url":"https://doi.org/10.3390/jimaging5120088","pdf_url":"https://www.mdpi.com/2313-433X/5/12/88/pdf?version=1576476065","source":{"id":"https://openalex.org/S2736465063","display_name":"Journal of Imaging","issn_l":"2313-433X","issn":["2313-433X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Imaging","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2313-433X/5/12/88/pdf?version=1576476065","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101568049","display_name":"Kazuo Katoh","orcid":"https://orcid.org/0000-0002-5766-708X"},"institutions":[{"id":"https://openalex.org/I24254649","display_name":"Tsukuba University of Technology","ror":"https://ror.org/057bx9y85","country_code":"JP","type":"education","lineage":["https://openalex.org/I24254649"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Kazuo Katoh","raw_affiliation_strings":["Faculty of Health Sciences, Tsukuba University of Technology, Laboratory of Human Anatomy and Cell Biology, 4-12-7 Kasuga, Tsukuba-city, Ibaraki 305-8521, Japan"],"raw_orcid":"https://orcid.org/0000-0002-5766-708X","affiliations":[{"raw_affiliation_string":"Faculty of Health Sciences, Tsukuba University of Technology, Laboratory of Human Anatomy and Cell Biology, 4-12-7 Kasuga, Tsukuba-city, Ibaraki 305-8521, Japan","institution_ids":["https://openalex.org/I24254649"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5101568049"],"corresponding_institution_ids":["https://openalex.org/I24254649"],"apc_list":{"value":1600,"currency":"CHF","value_usd":1732},"apc_paid":{"value":1600,"currency":"CHF","value_usd":1732},"fwci":0.2641,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.76904762,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"5","issue":"12","first_page":"88","last_page":"88"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10379","display_name":"Cellular Mechanics and Interactions","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microscope","display_name":"Microscope","score":0.8251628875732422},{"id":"https://openalex.org/keywords/deconvolution","display_name":"Deconvolution","score":0.8112853169441223},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6383206844329834},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.6297290325164795},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6228646636009216},{"id":"https://openalex.org/keywords/confocal","display_name":"Confocal","score":0.5457162857055664},{"id":"https://openalex.org/keywords/cardinal-point","display_name":"Cardinal point","score":0.5322584509849548},{"id":"https://openalex.org/keywords/point-spread-function","display_name":"Point spread function","score":0.5250123143196106},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.5032519698143005},{"id":"https://openalex.org/keywords/confocal-microscopy","display_name":"Confocal microscopy","score":0.4920491874217987},{"id":"https://openalex.org/keywords/fluorescence-microscope","display_name":"Fluorescence microscope","score":0.46100351214408875},{"id":"https://openalex.org/keywords/optical-microscope","display_name":"Optical microscope","score":0.42617231607437134},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.41666173934936523},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.3496023416519165},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3254772424697876},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.18502652645111084},{"id":"https://openalex.org/keywords/fluorescence","display_name":"Fluorescence","score":0.13207608461380005},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.09366244077682495}],"concepts":[{"id":"https://openalex.org/C67649825","wikidata":"https://www.wikidata.org/wiki/Q196538","display_name":"Microscope","level":2,"score":0.8251628875732422},{"id":"https://openalex.org/C174576160","wikidata":"https://www.wikidata.org/wiki/Q1183700","display_name":"Deconvolution","level":2,"score":0.8112853169441223},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6383206844329834},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.6297290325164795},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6228646636009216},{"id":"https://openalex.org/C136009344","wikidata":"https://www.wikidata.org/wiki/Q336201","display_name":"Confocal","level":2,"score":0.5457162857055664},{"id":"https://openalex.org/C138395690","wikidata":"https://www.wikidata.org/wiki/Q376733","display_name":"Cardinal point","level":2,"score":0.5322584509849548},{"id":"https://openalex.org/C69179731","wikidata":"https://www.wikidata.org/wiki/Q510427","display_name":"Point spread function","level":2,"score":0.5250123143196106},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.5032519698143005},{"id":"https://openalex.org/C2779178360","wikidata":"https://www.wikidata.org/wiki/Q902045","display_name":"Confocal microscopy","level":2,"score":0.4920491874217987},{"id":"https://openalex.org/C169274487","wikidata":"https://www.wikidata.org/wiki/Q840211","display_name":"Fluorescence microscope","level":3,"score":0.46100351214408875},{"id":"https://openalex.org/C77017923","wikidata":"https://www.wikidata.org/wiki/Q912313","display_name":"Optical microscope","level":3,"score":0.42617231607437134},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.41666173934936523},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.3496023416519165},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3254772424697876},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.18502652645111084},{"id":"https://openalex.org/C91881484","wikidata":"https://www.wikidata.org/wiki/Q191807","display_name":"Fluorescence","level":2,"score":0.13207608461380005},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.09366244077682495},{"id":"https://openalex.org/C26771246","wikidata":"https://www.wikidata.org/wiki/Q321095","display_name":"Scanning electron microscope","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3390/jimaging5120088","is_oa":true,"landing_page_url":"https://doi.org/10.3390/jimaging5120088","pdf_url":"https://www.mdpi.com/2313-433X/5/12/88/pdf?version=1576476065","source":{"id":"https://openalex.org/S2736465063","display_name":"Journal of Imaging","issn_l":"2313-433X","issn":["2313-433X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Imaging","raw_type":"journal-article"},{"id":"pmid:34460602","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34460602","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of imaging","raw_type":null},{"id":"pmh:oai:mdpi.com:/2313-433X/5/12/88/","is_oa":true,"landing_page_url":"http://doi.org/10.3390/jimaging5120088","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Imaging","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8321150","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8321150","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Imaging","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/jimaging5120088","is_oa":true,"landing_page_url":"https://doi.org/10.3390/jimaging5120088","pdf_url":"https://www.mdpi.com/2313-433X/5/12/88/pdf?version=1576476065","source":{"id":"https://openalex.org/S2736465063","display_name":"Journal of Imaging","issn_l":"2313-433X","issn":["2313-433X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Imaging","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2991423394.pdf"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1498664519","https://openalex.org/W1539090868","https://openalex.org/W1540070193","https://openalex.org/W1964624946","https://openalex.org/W1965676120","https://openalex.org/W1975852922","https://openalex.org/W1983517348","https://openalex.org/W1995413337","https://openalex.org/W2017014860","https://openalex.org/W2021749851","https://openalex.org/W2023213716","https://openalex.org/W2034151551","https://openalex.org/W2043191890","https://openalex.org/W2051542254","https://openalex.org/W2064173118","https://openalex.org/W2076006584","https://openalex.org/W2087351367","https://openalex.org/W2099540110","https://openalex.org/W2127320781","https://openalex.org/W2137753785","https://openalex.org/W2209037745","https://openalex.org/W2330507950","https://openalex.org/W2532431858","https://openalex.org/W2560518943","https://openalex.org/W2792501560","https://openalex.org/W3044583775","https://openalex.org/W6632100974"],"related_works":["https://openalex.org/W2091984142","https://openalex.org/W2151175808","https://openalex.org/W2726111829","https://openalex.org/W2082564995","https://openalex.org/W2990086811","https://openalex.org/W4387314726","https://openalex.org/W2790267366","https://openalex.org/W2001137152","https://openalex.org/W2769862828","https://openalex.org/W4327811029"],"abstract_inverted_index":{"-axis":[0],"due":[1],"to":[2,36,59,83],"non-focal":[3],"plane":[4],"image":[5],"information,":[6],"the":[7,47,50],"observation":[8],"of":[9,31,52,75],"biological":[10],"images":[11,114],"requires":[12],"\"deconvolution.\"":[13],"Therefore,":[14],"a":[15,61,85],"microscope":[16,63,86],"system's":[17],"individual":[18],"blur":[19],"function":[20],"(point":[21],"spread":[22],"function)":[23],"is":[24,78],"determined":[25],"theoretically":[26],"or":[27],"by":[28],"actual":[29],"measurement":[30],"microbeads":[32],"and":[33,39,55,71,81,93,107,124],"processed":[34],"mathematically":[35],"reduce":[37],"noise":[38],"eliminate":[40],"blurring":[41],"as":[42,44,105],"much":[43],"possible.":[45],"Here":[46],"author":[48],"describes":[49],"use":[51],"open-source":[53,94],"software":[54,70],"open":[56],"hardware":[57],"design":[58],"build":[60],"deconvolution":[62],"at":[64],"low":[65],"cost,":[66],"using":[67,88],"readily":[68],"available":[69,90],"hardware.":[72],"The":[73],"advantage":[74],"this":[76,97],"method":[77],"its":[79],"cost-effectiveness":[80],"ability":[82],"construct":[84],"system":[87,98],"commercially":[89],"optical":[91],"components":[92],"software.":[95],"Although":[96],"does":[99],"not":[100],"utilize":[101],"expensive":[102],"equipment,":[103],"such":[104],"confocal":[106],"total":[108],"internal":[109],"reflection":[110],"fluorescence":[111],"microscopes,":[112],"decent":[113],"can":[115],"be":[116],"obtained":[117],"even":[118],"without":[119],"previous":[120],"experience":[121],"in":[122],"electronics":[123],"optics.":[125]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-22T09:01:20.584952","created_date":"2025-10-10T00:00:00"}
