{"id":"https://openalex.org/W2972432929","doi":"https://doi.org/10.3390/jimaging5090075","title":"Segmentation and Modelling of the Nuclear Envelope of HeLa Cells Imaged with Serial Block Face Scanning Electron Microscopy","display_name":"Segmentation and Modelling of the Nuclear Envelope of HeLa Cells Imaged with Serial Block Face Scanning Electron Microscopy","publication_year":2019,"publication_date":"2019-09-12","ids":{"openalex":"https://openalex.org/W2972432929","doi":"https://doi.org/10.3390/jimaging5090075","mag":"2972432929","pmid":"https://pubmed.ncbi.nlm.nih.gov/34460669"},"language":"en","primary_location":{"id":"doi:10.3390/jimaging5090075","is_oa":true,"landing_page_url":"https://doi.org/10.3390/jimaging5090075","pdf_url":"https://www.mdpi.com/2313-433X/5/9/75/pdf?version=1568281833","source":{"id":"https://openalex.org/S2736465063","display_name":"Journal of Imaging","issn_l":"2313-433X","issn":["2313-433X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Imaging","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2313-433X/5/9/75/pdf?version=1568281833","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067134016","display_name":"Cefa Karaba\u011f","orcid":"https://orcid.org/0000-0003-4424-0471"},"institutions":[{"id":"https://openalex.org/I180825142","display_name":"City, University of London","ror":"https://ror.org/04489at23","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I180825142"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Cefa Karaba\u011f","raw_affiliation_strings":["Department of Electrical and Electronic Engineering, Research Centre for Biomedical Engineering, School of Mathematics, Computer Science and Engineering, City, University of London, London EC1V 0HB, UK"],"raw_orcid":"https://orcid.org/0000-0003-4424-0471","affiliations":[{"raw_affiliation_string":"Department of Electrical and Electronic Engineering, Research Centre for Biomedical Engineering, School of Mathematics, Computer Science and Engineering, City, University of London, London EC1V 0HB, UK","institution_ids":["https://openalex.org/I180825142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050656241","display_name":"Martin L. Jones","orcid":"https://orcid.org/0000-0003-0994-5652"},"institutions":[{"id":"https://openalex.org/I2801081054","display_name":"The Francis Crick Institute","ror":"https://ror.org/04tnbqb63","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2801081054"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Martin L. Jones","raw_affiliation_strings":["Electron Microscopy Science Technology Platform, The Francis Crick Institute, London NW1 1AT, UK"],"raw_orcid":"https://orcid.org/0000-0003-0994-5652","affiliations":[{"raw_affiliation_string":"Electron Microscopy Science Technology Platform, The Francis Crick Institute, London NW1 1AT, UK","institution_ids":["https://openalex.org/I2801081054"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037445001","display_name":"Christopher J. Peddie","orcid":"https://orcid.org/0000-0002-8329-5419"},"institutions":[{"id":"https://openalex.org/I2801081054","display_name":"The Francis Crick Institute","ror":"https://ror.org/04tnbqb63","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2801081054"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christopher J. Peddie","raw_affiliation_strings":["Electron Microscopy Science Technology Platform, The Francis Crick Institute, London NW1 1AT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electron Microscopy Science Technology Platform, The Francis Crick Institute, London NW1 1AT, UK","institution_ids":["https://openalex.org/I2801081054"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016595633","display_name":"Anne Weston","orcid":"https://orcid.org/0000-0001-6701-224X"},"institutions":[{"id":"https://openalex.org/I2801081054","display_name":"The Francis Crick Institute","ror":"https://ror.org/04tnbqb63","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2801081054"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anne E. Weston","raw_affiliation_strings":["Electron Microscopy Science Technology Platform, The Francis Crick Institute, London NW1 1AT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electron Microscopy Science Technology Platform, The Francis Crick Institute, London NW1 1AT, UK","institution_ids":["https://openalex.org/I2801081054"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032614754","display_name":"Lucy Collinson","orcid":"https://orcid.org/0000-0003-0260-613X"},"institutions":[{"id":"https://openalex.org/I2801081054","display_name":"The Francis Crick Institute","ror":"https://ror.org/04tnbqb63","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2801081054"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Lucy M. Collinson","raw_affiliation_strings":["Electron Microscopy Science Technology Platform, The Francis Crick Institute, London NW1 1AT, UK"],"raw_orcid":"https://orcid.org/0000-0003-0260-613X","affiliations":[{"raw_affiliation_string":"Electron Microscopy Science Technology Platform, The Francis Crick Institute, London NW1 1AT, UK","institution_ids":["https://openalex.org/I2801081054"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083253222","display_name":"Constantino Carlos Reyes\u2010Aldasoro","orcid":"https://orcid.org/0000-0002-9466-2018"},"institutions":[{"id":"https://openalex.org/I180825142","display_name":"City, University of London","ror":"https://ror.org/04489at23","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I180825142"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Constantino Carlos Reyes-Aldasoro","raw_affiliation_strings":["Department of Electrical and Electronic Engineering, Research Centre for Biomedical Engineering, School of Mathematics, Computer Science and Engineering, City, University of London, London EC1V 0HB, UK"],"raw_orcid":"https://orcid.org/0000-0002-9466-2018","affiliations":[{"raw_affiliation_string":"Department of Electrical and Electronic Engineering, Research Centre for Biomedical Engineering, School of Mathematics, Computer Science and Engineering, City, University of London, London EC1V 0HB, UK","institution_ids":["https://openalex.org/I180825142"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5067134016","https://openalex.org/A5083253222"],"corresponding_institution_ids":["https://openalex.org/I180825142"],"apc_list":{"value":1600,"currency":"CHF","value_usd":1732},"apc_paid":{"value":1600,"currency":"CHF","value_usd":1732},"fwci":3.6977,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.93030888,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"5","issue":"9","first_page":"75","last_page":"75"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/jaccard-index","display_name":"Jaccard index","score":0.7868521213531494},{"id":"https://openalex.org/keywords/pixel","display_name":"Pixel","score":0.7194632887840271},{"id":"https://openalex.org/keywords/envelope","display_name":"Envelope (radar)","score":0.6634526252746582},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5856481194496155},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.571337103843689},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5355292558670044},{"id":"https://openalex.org/keywords/block","display_name":"Block (permutation group theory)","score":0.4911341369152069},{"id":"https://openalex.org/keywords/hausdorff-distance","display_name":"Hausdorff distance","score":0.48920369148254395},{"id":"https://openalex.org/keywords/projection","display_name":"Projection (relational algebra)","score":0.4716816544532776},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4628637731075287},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.455333411693573},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.44854870438575745},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3688989281654358},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2768951952457428},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.23819509148597717},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.21525117754936218},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.19230520725250244}],"concepts":[{"id":"https://openalex.org/C203519979","wikidata":"https://www.wikidata.org/wiki/Q865360","display_name":"Jaccard index","level":3,"score":0.7868521213531494},{"id":"https://openalex.org/C160633673","wikidata":"https://www.wikidata.org/wiki/Q355198","display_name":"Pixel","level":2,"score":0.7194632887840271},{"id":"https://openalex.org/C65155139","wikidata":"https://www.wikidata.org/wiki/Q5380912","display_name":"Envelope (radar)","level":3,"score":0.6634526252746582},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5856481194496155},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.571337103843689},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5355292558670044},{"id":"https://openalex.org/C2777210771","wikidata":"https://www.wikidata.org/wiki/Q4927124","display_name":"Block (permutation group theory)","level":2,"score":0.4911341369152069},{"id":"https://openalex.org/C141898687","wikidata":"https://www.wikidata.org/wiki/Q1501997","display_name":"Hausdorff distance","level":2,"score":0.48920369148254395},{"id":"https://openalex.org/C57493831","wikidata":"https://www.wikidata.org/wiki/Q3134666","display_name":"Projection (relational algebra)","level":2,"score":0.4716816544532776},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4628637731075287},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.455333411693573},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.44854870438575745},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3688989281654358},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2768951952457428},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.23819509148597717},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.21525117754936218},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.19230520725250244},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C554190296","wikidata":"https://www.wikidata.org/wiki/Q47528","display_name":"Radar","level":2,"score":0.0}],"mesh":[],"locations_count":8,"locations":[{"id":"doi:10.3390/jimaging5090075","is_oa":true,"landing_page_url":"https://doi.org/10.3390/jimaging5090075","pdf_url":"https://www.mdpi.com/2313-433X/5/9/75/pdf?version=1568281833","source":{"id":"https://openalex.org/S2736465063","display_name":"Journal of Imaging","issn_l":"2313-433X","issn":["2313-433X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Imaging","raw_type":"journal-article"},{"id":"pmid:34460669","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34460669","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of imaging","raw_type":null},{"id":"pmh:oai:openaccess.city.ac.uk:22871","is_oa":false,"landing_page_url":"https://openaccess.city.ac.uk/view/creators_id/cefa=2Ekarabag=2E3.html>","pdf_url":null,"source":{"id":"https://openalex.org/S4306401940","display_name":"City Research Online (City University London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I180825142","host_organization_name":"City, University of London","host_organization_lineage":["https://openalex.org/I180825142"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:figshare.com:article/11637969","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/Segmentation_and_modelling_of_the_nuclear_envelope_of_HeLa_cells_imaged_with_Serial_Block_Face_Scanning_Electron_Microscopy/11637969","pdf_url":"https://figshare.com/articles/Segmentation_and_modelling_of_the_nuclear_envelope_of_HeLa_cells_imaged_with_Serial_Block_Face_Scanning_Electron_Microscopy/11637969","source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:cd6fbdc62c004131aa4cf3b83eccbcbb","is_oa":true,"landing_page_url":"https://doaj.org/article/cd6fbdc62c004131aa4cf3b83eccbcbb","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Imaging, Vol 5, Iss 9, p 75 (2019)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/2313-433X/5/9/75/","is_oa":true,"landing_page_url":"http://doi.org/10.3390/jimaging5090075","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Imaging","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8320948","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8320948","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Imaging","raw_type":"Text"},{"id":"doi:10.25418/crick.11637969.v1","is_oa":true,"landing_page_url":"https://doi.org/10.25418/crick.11637969.v1","pdf_url":null,"source":{"id":"https://openalex.org/S7407051354","display_name":"The Francis Crick Institute","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.3390/jimaging5090075","is_oa":true,"landing_page_url":"https://doi.org/10.3390/jimaging5090075","pdf_url":"https://www.mdpi.com/2313-433X/5/9/75/pdf?version=1568281833","source":{"id":"https://openalex.org/S2736465063","display_name":"Journal of Imaging","issn_l":"2313-433X","issn":["2313-433X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Imaging","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1741357583","display_name":null,"funder_award_id":"FC001999","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G7334240337","display_name":null,"funder_award_id":"FC001999","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G8709855168","display_name":null,"funder_award_id":"FC001999","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320319985","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2972432929.pdf"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W142539835","https://openalex.org/W1536149256","https://openalex.org/W1576155197","https://openalex.org/W1909009735","https://openalex.org/W1992109137","https://openalex.org/W1998801111","https://openalex.org/W2034184519","https://openalex.org/W2038665424","https://openalex.org/W2043398720","https://openalex.org/W2054395884","https://openalex.org/W2058218706","https://openalex.org/W2069081742","https://openalex.org/W2069702026","https://openalex.org/W2070468167","https://openalex.org/W2076242843","https://openalex.org/W2088256340","https://openalex.org/W2103243046","https://openalex.org/W2107105977","https://openalex.org/W2116040950","https://openalex.org/W2119049509","https://openalex.org/W2119298573","https://openalex.org/W2120549843","https://openalex.org/W2125065061","https://openalex.org/W2130677135","https://openalex.org/W2134112278","https://openalex.org/W2138364546","https://openalex.org/W2143454033","https://openalex.org/W2144907975","https://openalex.org/W2145023731","https://openalex.org/W2151538727","https://openalex.org/W2158586651","https://openalex.org/W2163395708","https://openalex.org/W2279402243","https://openalex.org/W2510690822","https://openalex.org/W2562957762","https://openalex.org/W2592107721","https://openalex.org/W2592517962","https://openalex.org/W2594600124","https://openalex.org/W2599106206","https://openalex.org/W2603165833","https://openalex.org/W2760913870","https://openalex.org/W2767704423","https://openalex.org/W2778248072","https://openalex.org/W2789290087","https://openalex.org/W2795250730","https://openalex.org/W2799629308","https://openalex.org/W2803418894","https://openalex.org/W2892384900","https://openalex.org/W2919115771","https://openalex.org/W2949846456","https://openalex.org/W2961912654","https://openalex.org/W4246525213","https://openalex.org/W4247471103","https://openalex.org/W4252563654","https://openalex.org/W4285719527","https://openalex.org/W6631949280"],"related_works":["https://openalex.org/W4254879869","https://openalex.org/W3022576529","https://openalex.org/W2628526247","https://openalex.org/W2596401011","https://openalex.org/W2913569734","https://openalex.org/W4401519790","https://openalex.org/W2702570413","https://openalex.org/W3127229356","https://openalex.org/W4380986815","https://openalex.org/W3161021928"],"abstract_inverted_index":{"This":[0],"paper":[1],"describes":[2],"an":[3],"unsupervised":[4],"algorithm,":[5],"which":[6,37],"segments":[7],"the":[8,25,54,60,79,103,108,113,123,168,186,192,203,207,215,224],"nuclear":[9,55,74,80,85,109],"envelope":[10,75,86,110],"of":[11,27,62,107,115,125,147,158,167,185,206],"HeLa":[12],"cells":[13,226],"imaged":[14],"by":[15,34],"Serial":[16],"Block":[17],"Face":[18],"Scanning":[19],"Electron":[20],"Microscopy.":[21],"The":[22,44,73,82,99,127,165,248],"algorithm":[23,128,169,249],"exploits":[24],"variations":[26],"pixel":[28],"intensity":[29],"in":[30,70,139,237,245,253],"different":[31],"cellular":[32],"regions":[33,68],"calculating":[35],"edges,":[36],"are":[38,46,57,209],"then":[39,88],"used":[40],"to":[41,53,93,121],"generate":[42],"superpixels.":[43],"superpixels":[45],"morphologically":[47],"processed":[48,236],"and":[49,65,111,131,137,179,195,200,227,241,256],"those":[50,213],"that":[51,117],"correspond":[52],"region":[56],"selected":[58],"through":[59],"analysis":[61],"size,":[63],"position,":[64],"correspondence":[66],"with":[67,144,172],"detected":[69],"neighbouring":[71],"slices.":[72,164,232],"is":[76,87],"segmented":[77,84],"from":[78],"region.":[81],"three-dimensional":[83],"modelled":[89],"against":[90],"a":[91,95,134,242],"spheroid":[92],"create":[94],"two-dimensional":[96],"(2D)":[97],"surface.":[98],"2D":[100],"surface":[101],"summarises":[102],"complex":[104],"3D":[105],"shape":[106],"allows":[112],"extraction":[114],"metrics":[116],"may":[118],"be":[119],"relevant":[120],"characterise":[122],"nature":[124],"cells.":[126],"was":[129,154,170,235],"developed":[130],"validated":[132],"on":[133,214],"single":[135],"cell":[136,244],"tested":[138],"six":[140],"separate":[141],"cells,":[142,160],"each":[143],"300":[145],"slices":[146,198,205],"2000":[148,150],"\u00d7":[149],"pixels.":[151],"Ground":[152],"truth":[153],"available":[155],"for":[156,191,223,230],"two":[157,173],"these":[159],"i.e.,":[161],"600":[162],"hand-segmented":[163],"accuracy":[166,255],"evaluated":[171],"similarity":[174],"metrics:":[175],"Jaccard":[176,183],"Similarity":[177],"Index":[178],"Mean":[180,217],"Hausdorff":[181,218],"distance.":[182],"values":[184],"first/second":[187],"segmentation":[188],"were":[189,220],"93%/90%":[190],"whole":[193,225,243],"cell,":[194],"98%/94%":[196],"between":[197],"75":[199],"225,":[201],"as":[202],"central":[204,231],"nucleus":[208],"more":[210],"regular":[211],"than":[212],"extremes.":[216],"distances":[219],"9/17":[221],"pixels":[222,229],"4/13":[228],"One":[233],"slice":[234],"approximately":[238],"8":[239],"s":[240],"40":[246],"min.":[247],"outperformed":[250],"active":[251],"contours":[252],"both":[254],"time.":[257]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":5}],"updated_date":"2026-05-22T09:01:20.584952","created_date":"2025-10-10T00:00:00"}
