{"id":"https://openalex.org/W4389537511","doi":"https://doi.org/10.3390/informatics10040089","title":"Knowledge-Based Intelligent Text Simplification for Biological Relation Extraction","display_name":"Knowledge-Based Intelligent Text Simplification for Biological Relation Extraction","publication_year":2023,"publication_date":"2023-12-11","ids":{"openalex":"https://openalex.org/W4389537511","doi":"https://doi.org/10.3390/informatics10040089"},"language":"en","primary_location":{"id":"doi:10.3390/informatics10040089","is_oa":true,"landing_page_url":"https://doi.org/10.3390/informatics10040089","pdf_url":"https://www.mdpi.com/2227-9709/10/4/89/pdf?version=1702284965","source":{"id":"https://openalex.org/S2738238905","display_name":"Informatics","issn_l":"2227-9709","issn":["2227-9709"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2227-9709/10/4/89/pdf?version=1702284965","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021117925","display_name":"Jaskaran Gill","orcid":null},"institutions":[{"id":"https://openalex.org/I149672521","display_name":"Federation University","ror":"https://ror.org/05qbzwv83","country_code":"AU","type":"education","lineage":["https://openalex.org/I149672521"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Jaskaran Gill","raw_affiliation_strings":["Health Innovation and Transformation Centre, Federation University, Ballarat, VIC 3842, Australia"],"raw_orcid":"https://orcid.org/0000-0003-4829-5971","affiliations":[{"raw_affiliation_string":"Health Innovation and Transformation Centre, Federation University, Ballarat, VIC 3842, Australia","institution_ids":["https://openalex.org/I149672521"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070425791","display_name":"Madhu Chetty","orcid":"https://orcid.org/0000-0001-7052-0413"},"institutions":[{"id":"https://openalex.org/I149672521","display_name":"Federation University","ror":"https://ror.org/05qbzwv83","country_code":"AU","type":"education","lineage":["https://openalex.org/I149672521"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Madhu Chetty","raw_affiliation_strings":["Health Innovation and Transformation Centre, Federation University, Ballarat, VIC 3842, Australia"],"raw_orcid":"https://orcid.org/0000-0001-7052-0413","affiliations":[{"raw_affiliation_string":"Health Innovation and Transformation Centre, Federation University, Ballarat, VIC 3842, Australia","institution_ids":["https://openalex.org/I149672521"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000489194","display_name":"Suryani Lim","orcid":"https://orcid.org/0000-0001-9782-1128"},"institutions":[{"id":"https://openalex.org/I149672521","display_name":"Federation University","ror":"https://ror.org/05qbzwv83","country_code":"AU","type":"education","lineage":["https://openalex.org/I149672521"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Suryani Lim","raw_affiliation_strings":["Health Innovation and Transformation Centre, Federation University, Ballarat, VIC 3842, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health Innovation and Transformation Centre, Federation University, Ballarat, VIC 3842, Australia","institution_ids":["https://openalex.org/I149672521"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040063046","display_name":"Jennifer Hallinan","orcid":null},"institutions":[{"id":"https://openalex.org/I149672521","display_name":"Federation University","ror":"https://ror.org/05qbzwv83","country_code":"AU","type":"education","lineage":["https://openalex.org/I149672521"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jennifer Hallinan","raw_affiliation_strings":["BioThink Pty Ltd., Brisbane, QLD 4020, Australia","Health Innovation and Transformation Centre, Federation University, Ballarat, VIC 3842, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioThink Pty Ltd., Brisbane, QLD 4020, Australia","institution_ids":[]},{"raw_affiliation_string":"Health Innovation and Transformation Centre, Federation University, Ballarat, VIC 3842, Australia","institution_ids":["https://openalex.org/I149672521"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5021117925","https://openalex.org/A5070425791"],"corresponding_institution_ids":["https://openalex.org/I149672521"],"apc_list":{"value":1600,"currency":"CHF","value_usd":1732},"apc_paid":{"value":1600,"currency":"CHF","value_usd":1732},"fwci":0.5998,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.70991237,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"10","issue":"4","first_page":"89","last_page":"89"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8459407091140747},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.8138384819030762},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.6357343196868896},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6262482404708862},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6028059720993042},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.5928869247436523},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5705019235610962},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.5406221151351929},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5264055132865906},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.47536200284957886},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.4317896366119385},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32008427381515503},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.1878502070903778},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.1367385983467102},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.10174226760864258}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8459407091140747},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.8138384819030762},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.6357343196868896},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6262482404708862},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6028059720993042},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.5928869247436523},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5705019235610962},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.5406221151351929},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5264055132865906},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.47536200284957886},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.4317896366119385},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32008427381515503},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.1878502070903778},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.1367385983467102},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.10174226760864258},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3390/informatics10040089","is_oa":true,"landing_page_url":"https://doi.org/10.3390/informatics10040089","pdf_url":"https://www.mdpi.com/2227-9709/10/4/89/pdf?version=1702284965","source":{"id":"https://openalex.org/S2738238905","display_name":"Informatics","issn_l":"2227-9709","issn":["2227-9709"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Informatics","raw_type":"journal-article"},{"id":"pmh:vital:19138","is_oa":true,"landing_page_url":"http://researchonline.federation.edu.au/vital/access/HandleResolver/1959.17/199119","pdf_url":null,"source":{"id":"https://openalex.org/S4306400234","display_name":"FedUni ResearchOnline (Federation University Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210158496","host_organization_name":"Australian Federation of University Women \u2013 South Australia","host_organization_lineage":["https://openalex.org/I4210158496"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:1ddbcedea6cf41579092181c67614499","is_oa":true,"landing_page_url":"https://doaj.org/article/1ddbcedea6cf41579092181c67614499","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Informatics, Vol 10, Iss 4, p 89 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/informatics10040089","is_oa":true,"landing_page_url":"https://doi.org/10.3390/informatics10040089","pdf_url":"https://www.mdpi.com/2227-9709/10/4/89/pdf?version=1702284965","source":{"id":"https://openalex.org/S2738238905","display_name":"Informatics","issn_l":"2227-9709","issn":["2227-9709"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Informatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.8299999833106995}],"awards":[],"funders":[{"id":"https://openalex.org/F4320324008","display_name":"Federation University Australia","ror":"https://ror.org/05qbzwv83"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389537511.pdf"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1850865022","https://openalex.org/W1872907992","https://openalex.org/W1891536063","https://openalex.org/W1968761064","https://openalex.org/W2063490579","https://openalex.org/W2064314529","https://openalex.org/W2082175819","https://openalex.org/W2096951189","https://openalex.org/W2097352005","https://openalex.org/W2097379344","https://openalex.org/W2097960255","https://openalex.org/W2127976940","https://openalex.org/W2130055902","https://openalex.org/W2250506667","https://openalex.org/W2512456704","https://openalex.org/W2551704653","https://openalex.org/W2564387948","https://openalex.org/W2592460572","https://openalex.org/W2734608416","https://openalex.org/W2766208765","https://openalex.org/W2794309877","https://openalex.org/W2795129839","https://openalex.org/W2807800730","https://openalex.org/W2883380892","https://openalex.org/W2911489562","https://openalex.org/W2913593516","https://openalex.org/W2960293113","https://openalex.org/W2963706121","https://openalex.org/W2976765180","https://openalex.org/W2982380908","https://openalex.org/W3005153244","https://openalex.org/W3011594683","https://openalex.org/W3028004046","https://openalex.org/W3127365350","https://openalex.org/W3138979178","https://openalex.org/W3141110397","https://openalex.org/W3166664235","https://openalex.org/W3172487188","https://openalex.org/W3204326283","https://openalex.org/W4205340501","https://openalex.org/W4214850807","https://openalex.org/W4221142212","https://openalex.org/W4293523123","https://openalex.org/W4295077729","https://openalex.org/W4297809627","https://openalex.org/W4320024140","https://openalex.org/W4320024282","https://openalex.org/W6733971936","https://openalex.org/W6748737155","https://openalex.org/W7034271850"],"related_works":["https://openalex.org/W2805262146","https://openalex.org/W2064314529","https://openalex.org/W4379517534","https://openalex.org/W2352298027","https://openalex.org/W4319940250","https://openalex.org/W842810586","https://openalex.org/W2092919065","https://openalex.org/W4236762297","https://openalex.org/W2572241437","https://openalex.org/W4379379356"],"abstract_inverted_index":{"Relation":[0],"extraction":[1,117],"from":[2,32,93],"biological":[3,72,119],"publications":[4],"plays":[5],"a":[6,106,166],"pivotal":[7],"role":[8],"in":[9,88,101,144,165,169,177,181],"accelerating":[10],"scientific":[11],"discovery":[12],"and":[13,59,77,80,126],"advancing":[14],"medical":[15],"research.":[16],"While":[17],"vast":[18],"amounts":[19],"of":[20,37,71,118,174],"this":[21,33,102],"knowledge":[22,52],"is":[23,39,122],"stored":[24],"within":[25,136],"the":[26,67,94,115,129,137,157,178,186,191],"published":[27],"literature,":[28],"extracting":[29,50],"it":[30],"manually":[31],"continually":[34],"growing":[35],"volume":[36],"documents":[38],"becoming":[40],"increasingly":[41],"arduous.":[42],"Recently,":[43],"attention":[44],"has":[45],"been":[46],"focused":[47,113],"towards":[48],"automatically":[49],"such":[51],"using":[53,160],"pre-trained":[54,193],"Large":[55],"Language":[56,180],"Models":[57],"(LLM)":[58],"deep-learning":[60],"algorithms":[61],"for":[62,146],"automated":[63],"relation":[64],"extraction.":[65],"However,":[66],"complex":[68],"syntactic":[69],"structure":[70],"sentences,":[73],"with":[74,171,189],"nested":[75],"entities":[76],"domain-specific":[78],"terminology,":[79],"insufficient":[81],"annotated":[82],"training":[83],"corpora,":[84],"poses":[85],"major":[86],"challenges":[87],"accurately":[89,127],"capturing":[90],"entity":[91],"relationships":[92],"unstructured":[95],"data.":[96],"To":[97],"address":[98],"these":[99],"issues,":[100],"paper,":[103],"we":[104],"propose":[105],"Knowledge-based":[107],"Intelligent":[108],"Text":[109],"Simplification":[110],"(KITS)":[111],"approach":[112],"on":[114],"accurate":[116],"relations.":[120],"KITS":[121],"able":[123,196],"to":[124,197],"precisely":[125],"capture":[128],"relational":[130],"context":[131],"among":[132],"various":[133],"binary":[134],"relations":[135],"sentence,":[138],"alongside":[139],"preventing":[140],"any":[141],"potential":[142],"changes":[143],"meaning":[145],"those":[147],"sentences":[148,175],"being":[149],"simplified":[150,176],"by":[151],"KITS.":[152],"The":[153],"experiments":[154],"show":[155],"that":[156],"proposed":[158,187],"technique,":[159],"well-known":[161],"performance":[162],"metrics,":[163],"resulted":[164],"21%":[167],"increase":[168],"precision,":[170],"only":[172],"25%":[173],"Learning":[179],"Logic":[182],"(LLL)":[183],"dataset.":[184],"Combining":[185],"method":[188],"BioBERT,":[190],"popular":[192],"LLM":[194],"was":[195],"outperform":[198],"other":[199],"state-of-the-art":[200],"methods.":[201]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1}],"updated_date":"2026-01-22T23:29:09.771500","created_date":"2025-10-10T00:00:00"}
