{"id":"https://openalex.org/W2788134845","doi":"https://doi.org/10.3390/info9010020","title":"Usability as the Key Factor to the Design of a Web Server for the CReF Protein Structure Predictor: The wCReF","display_name":"Usability as the Key Factor to the Design of a Web Server for the CReF Protein Structure Predictor: The wCReF","publication_year":2018,"publication_date":"2018-01-17","ids":{"openalex":"https://openalex.org/W2788134845","doi":"https://doi.org/10.3390/info9010020","mag":"2788134845"},"language":"en","primary_location":{"id":"doi:10.3390/info9010020","is_oa":true,"landing_page_url":"https://doi.org/10.3390/info9010020","pdf_url":"https://www.mdpi.com/2078-2489/9/1/20/pdf?version=1516204703","source":{"id":"https://openalex.org/S4210219776","display_name":"Information","issn_l":"2078-2489","issn":["2078-2489"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2078-2489/9/1/20/pdf?version=1516204703","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5098303053","display_name":"Vanessa Machado Paix\u00e3o-Cortes","orcid":null},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Vanessa Machado Paix\u00e3o-Cortes","raw_affiliation_strings":["Graduate Program in Computer Science\u2014PPGCC, Pontifical Catholic University of Rio Grande do Sul (PUCRS), Ipiranga Avenue, 6681 Partenon, Porto Alegre 90619-900, Rio Grande do Sul, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Program in Computer Science\u2014PPGCC, Pontifical Catholic University of Rio Grande do Sul (PUCRS), Ipiranga Avenue, 6681 Partenon, Porto Alegre 90619-900, Rio Grande do Sul, Brazil","institution_ids":["https://openalex.org/I45643870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085373661","display_name":"Michele dos Santos da Silva Tanus","orcid":null},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Michele Dos Santos da Silva Tanus","raw_affiliation_strings":["Graduate Program in Computer Science\u2014PPGCC, Pontifical Catholic University of Rio Grande do Sul (PUCRS), Ipiranga Avenue, 6681 Partenon, Porto Alegre 90619-900, Rio Grande do Sul, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Program in Computer Science\u2014PPGCC, Pontifical Catholic University of Rio Grande do Sul (PUCRS), Ipiranga Avenue, 6681 Partenon, Porto Alegre 90619-900, Rio Grande do Sul, Brazil","institution_ids":["https://openalex.org/I45643870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075940526","display_name":"Walter Ritzel Paix\u00e3o-C\u00f4rtes","orcid":null},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Walter Paix\u00e3o-Cortes","raw_affiliation_strings":["Graduate Program in Computer Science\u2014PPGCC, Pontifical Catholic University of Rio Grande do Sul (PUCRS), Ipiranga Avenue, 6681 Partenon, Porto Alegre 90619-900, Rio Grande do Sul, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Program in Computer Science\u2014PPGCC, Pontifical Catholic University of Rio Grande do Sul (PUCRS), Ipiranga Avenue, 6681 Partenon, Porto Alegre 90619-900, Rio Grande do Sul, Brazil","institution_ids":["https://openalex.org/I45643870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064713906","display_name":"Osmar Norberto de Souza","orcid":"https://orcid.org/0000-0002-4602-1208"},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Osmar De Souza","raw_affiliation_strings":["Graduate Program in Computer Science\u2014PPGCC, Pontifical Catholic University of Rio Grande do Sul (PUCRS), Ipiranga Avenue, 6681 Partenon, Porto Alegre 90619-900, Rio Grande do Sul, Brazil"],"raw_orcid":"https://orcid.org/0000-0002-4602-1208","affiliations":[{"raw_affiliation_string":"Graduate Program in Computer Science\u2014PPGCC, Pontifical Catholic University of Rio Grande do Sul (PUCRS), Ipiranga Avenue, 6681 Partenon, Porto Alegre 90619-900, Rio Grande do Sul, Brazil","institution_ids":["https://openalex.org/I45643870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079823267","display_name":"M\u00e1rcia de Borba Campos","orcid":"https://orcid.org/0000-0002-5417-2524"},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Marcia De Borba Campos","raw_affiliation_strings":["Graduate Program in Computer Science\u2014PPGCC, Pontifical Catholic University of Rio Grande do Sul (PUCRS), Ipiranga Avenue, 6681 Partenon, Porto Alegre 90619-900, Rio Grande do Sul, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Program in Computer Science\u2014PPGCC, Pontifical Catholic University of Rio Grande do Sul (PUCRS), Ipiranga Avenue, 6681 Partenon, Porto Alegre 90619-900, Rio Grande do Sul, Brazil","institution_ids":["https://openalex.org/I45643870"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039610148","display_name":"Milene Selbach Silveira","orcid":"https://orcid.org/0000-0003-2159-551X"},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Milene Silveira","raw_affiliation_strings":["Graduate Program in Computer Science\u2014PPGCC, Pontifical Catholic University of Rio Grande do Sul (PUCRS), Ipiranga Avenue, 6681 Partenon, Porto Alegre 90619-900, Rio Grande do Sul, Brazil"],"raw_orcid":"https://orcid.org/0000-0003-2159-551X","affiliations":[{"raw_affiliation_string":"Graduate Program in Computer Science\u2014PPGCC, Pontifical Catholic University of Rio Grande do Sul (PUCRS), Ipiranga Avenue, 6681 Partenon, Porto Alegre 90619-900, Rio Grande do Sul, Brazil","institution_ids":["https://openalex.org/I45643870"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5064713906"],"corresponding_institution_ids":["https://openalex.org/I45643870"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":0.2783,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.55978516,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"9","issue":"1","first_page":"20","last_page":"20"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9807999730110168,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9664000272750854,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.8409210443496704},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.7701737284660339},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7318000793457031},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.5787981152534485},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.5585174560546875},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.5064300298690796},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.44997745752334595},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4253259599208832},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.41649046540260315},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4023618698120117},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35633403062820435},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34365618228912354},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23466601967811584},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.2210817039012909},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.19023466110229492},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.18969079852104187},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.16725558042526245},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14743825793266296}],"concepts":[{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.8409210443496704},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.7701737284660339},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7318000793457031},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5787981152534485},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.5585174560546875},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.5064300298690796},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.44997745752334595},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4253259599208832},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.41649046540260315},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4023618698120117},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35633403062820435},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34365618228912354},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23466601967811584},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.2210817039012909},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.19023466110229492},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.18969079852104187},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16725558042526245},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14743825793266296},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3390/info9010020","is_oa":true,"landing_page_url":"https://doi.org/10.3390/info9010020","pdf_url":"https://www.mdpi.com/2078-2489/9/1/20/pdf?version=1516204703","source":{"id":"https://openalex.org/S4210219776","display_name":"Information","issn_l":"2078-2489","issn":["2078-2489"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:56a92c261f4c4a2092f9d98025ffa7fc","is_oa":true,"landing_page_url":"https://doaj.org/article/56a92c261f4c4a2092f9d98025ffa7fc","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Information, Vol 9, Iss 1, p 20 (2018)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/2078-2489/9/1/20/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/info9010020","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Information; Volume 9; Issue 1; Pages: 20","raw_type":"Text"},{"id":"pmh:oai:meriva.pucrs.br:10923/12940","is_oa":true,"landing_page_url":"http://hdl.handle.net/10923/12940","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:PUC_RS","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.3390/info9010020","is_oa":true,"landing_page_url":"https://doi.org/10.3390/info9010020","pdf_url":"https://www.mdpi.com/2078-2489/9/1/20/pdf?version=1516204703","source":{"id":"https://openalex.org/S4210219776","display_name":"Information","issn_l":"2078-2489","issn":["2078-2489"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G8119302189","display_name":null,"funder_award_id":"TO2054-2551/13-0","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"}],"funders":[{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320322502","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado do Rio Grande do Sul","ror":"https://ror.org/05k49za97"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2788134845.pdf","grobid_xml":"https://content.openalex.org/works/W2788134845.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W584526652","https://openalex.org/W1538088525","https://openalex.org/W1566621694","https://openalex.org/W1970525140","https://openalex.org/W1974165330","https://openalex.org/W1982392512","https://openalex.org/W1982583124","https://openalex.org/W2014050554","https://openalex.org/W2016277862","https://openalex.org/W2020122119","https://openalex.org/W2021559748","https://openalex.org/W2039675847","https://openalex.org/W2045777307","https://openalex.org/W2055043387","https://openalex.org/W2062393514","https://openalex.org/W2064058241","https://openalex.org/W2067098868","https://openalex.org/W2073217525","https://openalex.org/W2078907683","https://openalex.org/W2079710172","https://openalex.org/W2079966055","https://openalex.org/W2107956427","https://openalex.org/W2110092954","https://openalex.org/W2111023940","https://openalex.org/W2115167726","https://openalex.org/W2124371326","https://openalex.org/W2128665694","https://openalex.org/W2128891413","https://openalex.org/W2130479394","https://openalex.org/W2131804401","https://openalex.org/W2133341347","https://openalex.org/W2133949404","https://openalex.org/W2137071825","https://openalex.org/W2144213670","https://openalex.org/W2144981983","https://openalex.org/W2146899016","https://openalex.org/W2152208870","https://openalex.org/W2152309982","https://openalex.org/W2155159626","https://openalex.org/W2155201844","https://openalex.org/W2163234308","https://openalex.org/W2169150541","https://openalex.org/W2220680407","https://openalex.org/W2225560680","https://openalex.org/W2227395312","https://openalex.org/W2611369375","https://openalex.org/W2615156351","https://openalex.org/W2735662661","https://openalex.org/W2963614249","https://openalex.org/W3023580939","https://openalex.org/W3148081761","https://openalex.org/W3198971594","https://openalex.org/W4230784961","https://openalex.org/W4239496300","https://openalex.org/W4244040930","https://openalex.org/W4251386234","https://openalex.org/W4290728387","https://openalex.org/W6679881784","https://openalex.org/W6682533003"],"related_works":["https://openalex.org/W2153414768","https://openalex.org/W2946599741","https://openalex.org/W2464070928","https://openalex.org/W2593264178","https://openalex.org/W2136856901","https://openalex.org/W2368468053","https://openalex.org/W2060259273","https://openalex.org/W2058542300","https://openalex.org/W2043066834","https://openalex.org/W1564749278"],"abstract_inverted_index":{"Protein":[0,100],"structure":[1,12,124,165,207,251],"prediction":[2,125,188,208,252],"servers":[3,253],"use":[4],"various":[5],"computational":[6,347],"methods":[7],"to":[8,24,35,55,74,169,224,248,342,356],"predict":[9],"the":[10,37,46,57,60,75,87,94,105,115,120,128,152,167,172,183,187,202,210,215,240,249,281,308,319,343,350,357,360,365,379],"three-dimensional":[11,69],"of":[13,39,45,64,77,86,156,174,186,196,204,310,345,352,359],"proteins":[14],"from":[15,294],"their":[16,157],"amino":[17,61,153],"acid":[18,62,154],"sequence.":[19],"Predicted":[20],"models":[21],"are":[22,337],"used":[23,232,367],"infer":[25],"protein":[26,42,66,123,159,206,250],"function":[27,76],"and":[28,67,143,160,214,228,243,256,276,371,378],"guide":[29],"experimental":[30],"efforts.":[31],"This":[32,80],"can":[33,150],"contribute":[34,341],"solving":[36],"problem":[38],"predicting":[40],"tertiary":[41],"structures,":[43],"one":[44],"main":[47],"unsolved":[48],"problems":[49,313],"in":[50,104,190,222,238,264,268,289,368],"bioinformatics.":[51,353],"The":[52,90,133],"challenge":[53],"is":[54,72,82],"understand":[56],"relationship":[58],"between":[59],"sequence":[63,155],"a":[65,122,139,205,259,290,305],"its":[68,162],"structure,":[70],"which":[71,192,339],"related":[73],"these":[78],"macromolecules.":[79],"article":[81,88],"an":[83],"extended":[84,179],"version":[85],"wCReF:":[89],"Web":[91],"Server":[92],"for":[93,127,334,349],"Central":[95],"Residue":[96],"Fragment-based":[97],"Method":[98],"(CReF)":[99],"Structure":[101],"Predictor,":[102],"published":[103],"14th":[106],"International":[107],"Conference":[108],"on":[109,141],"Information":[110],"Technology:":[111],"New":[112],"Generations.":[113],"In":[114,177,354],"first":[116],"version,":[117,180],"we":[118,181,230,363],"presented":[119],"wCReF,":[121],"server":[126,189,219],"central":[129],"residue":[130],"fragment-based":[131],"method.":[132],"wCReF":[134,285,302],"interface":[135,335],"was":[136,298],"developed":[137],"with":[138,314],"focus":[140],"usability":[142,220,270,303,312],"user":[144,197,212],"interaction.":[145],"With":[146],"this":[147,178,295],"tool,":[148],"users":[149,316],"enter":[151],"target":[158],"obtain":[161],"approximate":[163],"3D":[164],"without":[166],"need":[168],"install":[170],"all":[171,265],"multitude":[173],"necessary":[175],"tools.":[176],"present":[182,364],"design":[184,336,344,370],"process":[185,373],"detail,":[191],"includes:":[193],"(A)":[194],"identification":[195],"needs:":[198],"aiming":[199],"at":[200,307],"understanding":[201],"features":[203,283],"server,":[209],"end":[211,315],"profiles":[213],"commonly-performed":[216],"tasks;":[217],"(B)":[218],"inspection:":[221],"order":[223],"define":[225],"wCReF\u2019s":[226,369],"requirements":[227,274,292],"features,":[229],"have":[231,287],"heuristic":[233],"evaluation":[234,324,372,376],"guided":[235],"by":[236,317],"experts":[237],"both":[239],"human-computer":[241],"interaction":[242],"bioinformatics":[244],"domain":[245],"areas,":[246],"applied":[247],"I-TASSER,":[254],"QUARK":[255],"Robetta;":[257],"as":[258],"result,":[260],"changes":[261],"were":[262],"found":[263],"heuristics":[266],"resulting":[267],"89":[269],"problems;":[271],"(C)":[272],"software":[273,291],"document":[275],"prototype:":[277],"assessment":[278],"results":[279,358,380],"guiding":[280],"key":[282],"that":[284],"must":[286],"compiled":[288],"document;":[293],"step,":[296],"prototyping":[297],"carried":[299],"out;":[300],"(D)":[301],"analysis:":[304],"glimpse":[306],"detection":[309],"new":[311],"adapting":[318],"Ssemugabi":[320],"satisfaction":[321],"questionnaire;":[322],"users\u2019":[323],"had":[325],"80%":[326],"positive":[327],"feedback;":[328],"(E)":[329],"finally,":[330],"some":[331],"specific":[332],"guidelines":[333],"presented,":[338],"may":[340],"interactive":[346],"resources":[348],"field":[351],"addition":[355],"original":[361],"article,":[362],"methodology":[366],"(sample,":[374],"procedures,":[375],"tools)":[377],"obtained.":[381]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2018-03-06T00:00:00"}
