{"id":"https://openalex.org/W2192572088","doi":"https://doi.org/10.3390/info6040848","title":"Effects of Semantic Features on Machine Learning-Based Drug Name Recognition Systems: Word Embeddings vs. Manually Constructed Dictionaries","display_name":"Effects of Semantic Features on Machine Learning-Based Drug Name Recognition Systems: Word Embeddings vs. Manually Constructed Dictionaries","publication_year":2015,"publication_date":"2015-12-11","ids":{"openalex":"https://openalex.org/W2192572088","doi":"https://doi.org/10.3390/info6040848","mag":"2192572088"},"language":"en","primary_location":{"id":"doi:10.3390/info6040848","is_oa":true,"landing_page_url":"https://doi.org/10.3390/info6040848","pdf_url":"https://www.mdpi.com/2078-2489/6/4/848/pdf?version=1449838838","source":{"id":"https://openalex.org/S4210219776","display_name":"Information","issn_l":"2078-2489","issn":["2078-2489"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2078-2489/6/4/848/pdf?version=1449838838","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100739947","display_name":"Shengyu Liu","orcid":"https://orcid.org/0000-0002-1051-7893"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shengyu Liu","raw_affiliation_strings":["Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen 518055, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen 518055, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014238603","display_name":"Buzhou Tang","orcid":"https://orcid.org/0000-0003-0271-8246"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Buzhou Tang","raw_affiliation_strings":["Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen 518055, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen 518055, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101895423","display_name":"Qingcai Chen","orcid":"https://orcid.org/0000-0001-8473-7293"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qingcai Chen","raw_affiliation_strings":["Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen 518055, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen 518055, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100424254","display_name":"Xiaolong Wang","orcid":"https://orcid.org/0000-0001-9003-4252"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaolong Wang","raw_affiliation_strings":["Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen 518055, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Network Oriented Intelligent Computation, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen 518055, China","institution_ids":["https://openalex.org/I204983213"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5101895423"],"corresponding_institution_ids":["https://openalex.org/I204983213"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":2.8081,"has_fulltext":true,"cited_by_count":59,"citation_normalized_percentile":{"value":0.91143574,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"6","issue":"4","first_page":"848","last_page":"865"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7947850227355957},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.7719499468803406},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7190067172050476},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.6583895683288574},{"id":"https://openalex.org/keywords/latent-semantic-analysis","display_name":"Latent semantic analysis","score":0.6025746464729309},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4904122054576874},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08072608709335327}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7947850227355957},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.7719499468803406},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7190067172050476},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.6583895683288574},{"id":"https://openalex.org/C170133592","wikidata":"https://www.wikidata.org/wiki/Q1806883","display_name":"Latent semantic analysis","level":2,"score":0.6025746464729309},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4904122054576874},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08072608709335327},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3390/info6040848","is_oa":true,"landing_page_url":"https://doi.org/10.3390/info6040848","pdf_url":"https://www.mdpi.com/2078-2489/6/4/848/pdf?version=1449838838","source":{"id":"https://openalex.org/S4210219776","display_name":"Information","issn_l":"2078-2489","issn":["2078-2489"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:f6a85d2a6ad240ebaf03364d4d2870ab","is_oa":true,"landing_page_url":"https://doaj.org/article/f6a85d2a6ad240ebaf03364d4d2870ab","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Information, Vol 6, Iss 4, Pp 848-865 (2015)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/2078-2489/6/4/848/","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3390/info6040848","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Information","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/info6040848","is_oa":true,"landing_page_url":"https://doi.org/10.3390/info6040848","pdf_url":"https://www.mdpi.com/2078-2489/6/4/848/pdf?version=1449838838","source":{"id":"https://openalex.org/S4210219776","display_name":"Information","issn_l":"2078-2489","issn":["2078-2489"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.7799999713897705}],"awards":[{"id":"https://openalex.org/G1422164818","display_name":null,"funder_award_id":"JCYJ20140417172417105","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2060668466","display_name":null,"funder_award_id":"61473101","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2350075274","display_name":"\u9762\u5411\u771f\u5b9e\u73af\u5883\u7684\u5f02\u6784\u4fe1\u606f\u4ea4\u4e92\u5f0f\u95ee\u7b54\u7406\u8bba\u4e0e\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61272383","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3881918265","display_name":null,"funder_award_id":"2015AA015405","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4223018868","display_name":"\u7f51\u7edc\u4fe1\u606f\u81ea\u4e3b\u6574\u5408\u5173\u952e\u6280\u672f\u7814\u7a76","funder_award_id":"61173075","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4243412236","display_name":null,"funder_award_id":"863 Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6600118984","display_name":null,"funder_award_id":"JCYJ20140627163809422","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7128034784","display_name":null,"funder_award_id":"61402128","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8797872116","display_name":null,"funder_award_id":"JCYJ20140508161040764","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335773","display_name":"National High-tech Research and Development Program","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2192572088.pdf","grobid_xml":"https://content.openalex.org/works/W2192572088.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W36903255","https://openalex.org/W103980920","https://openalex.org/W179875071","https://openalex.org/W886998232","https://openalex.org/W1152166452","https://openalex.org/W1614298861","https://openalex.org/W1632114991","https://openalex.org/W1970095690","https://openalex.org/W2004763266","https://openalex.org/W2036516910","https://openalex.org/W2039377777","https://openalex.org/W2046844528","https://openalex.org/W2052525903","https://openalex.org/W2095444228","https://openalex.org/W2096765155","https://openalex.org/W2098921539","https://openalex.org/W2107435951","https://openalex.org/W2114361266","https://openalex.org/W2114668172","https://openalex.org/W2121227244","https://openalex.org/W2121244856","https://openalex.org/W2128535227","https://openalex.org/W2130160813","https://openalex.org/W2131462252","https://openalex.org/W2132079307","https://openalex.org/W2135616521","https://openalex.org/W2137052779","https://openalex.org/W2138482836","https://openalex.org/W2141099517","https://openalex.org/W2144578941","https://openalex.org/W2145870108","https://openalex.org/W2147880316","https://openalex.org/W2148488766","https://openalex.org/W2151296343","https://openalex.org/W2152463966","https://openalex.org/W2153579005","https://openalex.org/W2158139315","https://openalex.org/W2158899491","https://openalex.org/W2158997610","https://openalex.org/W2159636537","https://openalex.org/W2160022416","https://openalex.org/W2160091014","https://openalex.org/W2164019165","https://openalex.org/W2169491861","https://openalex.org/W2184865040","https://openalex.org/W2250640910","https://openalex.org/W2250713895","https://openalex.org/W2251593362","https://openalex.org/W2251794383","https://openalex.org/W2950396480","https://openalex.org/W2952087486","https://openalex.org/W2952230511","https://openalex.org/W2964266863","https://openalex.org/W2998704965","https://openalex.org/W4285719527","https://openalex.org/W6624822662","https://openalex.org/W6636649193","https://openalex.org/W6678277124","https://openalex.org/W6679051890","https://openalex.org/W6680532216","https://openalex.org/W6682238262","https://openalex.org/W6683738474","https://openalex.org/W6764685693","https://openalex.org/W7043235420"],"related_works":["https://openalex.org/W2085599877","https://openalex.org/W1964929739","https://openalex.org/W2775171027","https://openalex.org/W2020883292","https://openalex.org/W2938025122","https://openalex.org/W1970275956","https://openalex.org/W3204019825","https://openalex.org/W4297311549","https://openalex.org/W2296205523","https://openalex.org/W3094050601"],"abstract_inverted_index":{"Semantic":[0],"features":[1,15,95,121,133,211,240,253,264],"are":[2,21,49,207,226,248,269],"very":[3],"important":[4],"for":[5,147],"machine":[6],"learning-based":[7],"drug":[8,24,32,44,98,137,214,243,256,267],"name":[9],"recognition":[10],"(DNR)":[11],"systems.":[12,90],"The":[13,149,179],"semantic":[14,64,94,120,132,210,239,252,263],"used":[16,71,87,156],"in":[17,88,106],"most":[18],"DNR":[19,89,127,203],"systems":[20],"based":[22,96,122,134,212,241,254,265],"on":[23,97,123,126,135,161,183,213,242,255,266],"dictionaries":[25,33,45,268],"manually":[26],"constructed":[27],"by":[28,219,292],"experts.":[29],"Building":[30],"large-scale":[31],"is":[34,51,110,155,181,217,233],"a":[35,53,141],"time-consuming":[36],"task":[37],"and":[38,128,205,262],"adding":[39],"new":[40],"drugs":[41],"to":[42,72,92,157,250],"existing":[43],"immediately":[46],"after":[47],"they":[48,83,206],"developed":[50],"also":[52],"challenge.":[54],"In":[55,112],"recent":[56],"years,":[57],"word":[58,103,124,159,195,224,246,260],"embeddings":[59,104,125,160,196,225,247,261],"that":[60,107,194],"contain":[61],"rich":[62],"latent":[63],"information":[65],"of":[66,76,102,119,174,201,280,287],"words":[67],"have":[68,84],"been":[69,86],"widely":[70],"improve":[73,198],"the":[74,93,100,117,184,199,202,229,236,251,271,274,284,288],"performance":[75,200,276],"various":[77],"natural":[78],"language":[79],"processing":[80],"tasks.":[81],"However,":[82],"not":[85],"Compared":[91],"dictionaries,":[99],"advantage":[101],"lies":[105],"learning":[108],"them":[109,130],"unsupervised.":[111],"this":[113],"paper,":[114],"we":[115],"investigate":[116],"effect":[118],"compare":[129],"with":[131,209,235,277],"three":[136],"dictionaries.":[138,215,244,257],"We":[139],"propose":[140],"conditional":[142],"random":[143],"fields":[144],"(CRF)-based":[145],"system":[146,180,204,272,286],"DNR.":[148],"skip-gram":[150],"model,":[151],"an":[152,278],"unsupervised":[153],"algorithm,":[154],"induce":[158],"about":[162],"17.3":[163],"GigaByte":[164],"(GB)":[165],"unlabeled":[166],"biomedical":[167],"texts":[168],"collected":[169],"from":[170,238],"MEDLINE":[171],"(National":[172],"Library":[173],"Medicine,":[175],"Bethesda,":[176],"MD,":[177],"USA).":[178],"evaluated":[182],"drug-drug":[185],"interaction":[186],"extraction":[187],"(DDIExtraction)":[188],"2013":[189,290],"corpus.":[190],"Experimental":[191],"results":[192],"show":[193],"significantly":[197],"competitive":[208],"F-score":[216,279],"improved":[218],"2.92":[220],"percentage":[221,294],"points":[222],"when":[223],"added":[227],"into":[228],"baseline":[230],"system.":[231],"It":[232],"comparative":[234],"improvements":[237],"Furthermore,":[245],"complementary":[249],"When":[258],"both":[259],"added,":[270],"achieves":[273],"best":[275,285],"78.37%,":[281],"which":[282],"outperforms":[283],"DDIExtraction":[289],"challenge":[291],"6.87":[293],"points.":[295]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
