{"id":"https://openalex.org/W4403748901","doi":"https://doi.org/10.3390/info15110669","title":"Building Bio-Ontology Graphs from Data Using Logic and NLP","display_name":"Building Bio-Ontology Graphs from Data Using Logic and NLP","publication_year":2024,"publication_date":"2024-10-25","ids":{"openalex":"https://openalex.org/W4403748901","doi":"https://doi.org/10.3390/info15110669"},"language":"en","primary_location":{"id":"doi:10.3390/info15110669","is_oa":true,"landing_page_url":"https://doi.org/10.3390/info15110669","pdf_url":"https://www.mdpi.com/2078-2489/15/11/669/pdf?version=1729836337","source":{"id":"https://openalex.org/S4210219776","display_name":"Information","issn_l":"2078-2489","issn":["2078-2489"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2078-2489/15/11/669/pdf?version=1729836337","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Theresa Gasser","orcid":null},"institutions":[{"id":"https://openalex.org/I182980787","display_name":"University of Dallas","ror":"https://ror.org/00v3ak792","country_code":"US","type":"education","lineage":["https://openalex.org/I182980787"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Theresa Gasser","raw_affiliation_strings":["Department of Mathematics, University of Dallas, Irving, TX 75062, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Dallas, Irving, TX 75062, USA","institution_ids":["https://openalex.org/I182980787"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041443233","display_name":"Erick Chastain","orcid":"https://orcid.org/0000-0002-7927-3444"},"institutions":[{"id":"https://openalex.org/I182980787","display_name":"University of Dallas","ror":"https://ror.org/00v3ak792","country_code":"US","type":"education","lineage":["https://openalex.org/I182980787"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Erick Chastain","raw_affiliation_strings":["Department of Mathematics, University of Dallas, Irving, TX 75062, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Dallas, Irving, TX 75062, USA","institution_ids":["https://openalex.org/I182980787"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5041443233"],"corresponding_institution_ids":["https://openalex.org/I182980787"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.16640652,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"15","issue":"11","first_page":"669","last_page":"669"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9829000234603882,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7246834635734558},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6829184889793396},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6767016649246216},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6609620451927185},{"id":"https://openalex.org/keywords/description-logic","display_name":"Description logic","score":0.4435279369354248},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4288618862628937},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.4118642210960388},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.05455157160758972}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7246834635734558},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6829184889793396},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6767016649246216},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6609620451927185},{"id":"https://openalex.org/C102993220","wikidata":"https://www.wikidata.org/wiki/Q387196","display_name":"Description logic","level":2,"score":0.4435279369354248},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4288618862628937},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.4118642210960388},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.05455157160758972},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3390/info15110669","is_oa":true,"landing_page_url":"https://doi.org/10.3390/info15110669","pdf_url":"https://www.mdpi.com/2078-2489/15/11/669/pdf?version=1729836337","source":{"id":"https://openalex.org/S4210219776","display_name":"Information","issn_l":"2078-2489","issn":["2078-2489"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:24feeeb5ac214a95b37a81f28d89a521","is_oa":true,"landing_page_url":"https://doaj.org/article/24feeeb5ac214a95b37a81f28d89a521","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Information, Vol 15, Iss 11, p 669 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/info15110669","is_oa":true,"landing_page_url":"https://doi.org/10.3390/info15110669","pdf_url":"https://www.mdpi.com/2078-2489/15/11/669/pdf?version=1729836337","source":{"id":"https://openalex.org/S4210219776","display_name":"Information","issn_l":"2078-2489","issn":["2078-2489"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.75,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403748901.pdf","grobid_xml":"https://content.openalex.org/works/W4403748901.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W585623638","https://openalex.org/W1487060125","https://openalex.org/W1510718138","https://openalex.org/W1748928863","https://openalex.org/W1967642442","https://openalex.org/W1996599952","https://openalex.org/W2008663722","https://openalex.org/W2041250129","https://openalex.org/W2048953720","https://openalex.org/W2068737686","https://openalex.org/W2075322664","https://openalex.org/W2091729411","https://openalex.org/W2103017472","https://openalex.org/W2113142309","https://openalex.org/W2114850508","https://openalex.org/W2123767501","https://openalex.org/W2132022337","https://openalex.org/W2133465414","https://openalex.org/W2134418889","https://openalex.org/W2251913848","https://openalex.org/W2261387751","https://openalex.org/W2302963717","https://openalex.org/W2341128841","https://openalex.org/W2396881363","https://openalex.org/W2593652440","https://openalex.org/W2950595506","https://openalex.org/W3018965582","https://openalex.org/W3029478033","https://openalex.org/W3035434194","https://openalex.org/W3088646411","https://openalex.org/W3167906655","https://openalex.org/W3170771812","https://openalex.org/W4245872869","https://openalex.org/W4248143278","https://openalex.org/W4283169010","https://openalex.org/W4297253404","https://openalex.org/W4306980360","https://openalex.org/W4388948676","https://openalex.org/W6629025635","https://openalex.org/W6638918635","https://openalex.org/W6745855805","https://openalex.org/W6829298752"],"related_works":["https://openalex.org/W2003333417","https://openalex.org/W2378862226","https://openalex.org/W118236634","https://openalex.org/W2355326633","https://openalex.org/W2804669904","https://openalex.org/W2149777447","https://openalex.org/W2347456287","https://openalex.org/W2121651557","https://openalex.org/W2782969047","https://openalex.org/W4401210459"],"abstract_inverted_index":{"In":[0],"this":[1,61,157],"age":[2],"of":[3,89,122],"big":[4],"data":[5,28,40,72],"and":[6,18,46,69,85,132,166],"natural":[7,133],"language":[8],"processing,":[9],"to":[10,21,59,73,78,91,100,116,135,138,147],"what":[11],"extent":[12],"can":[13,144],"we":[14,81,95,143],"leverage":[15],"new":[16,19],"technologies":[17],"tools":[20],"make":[22],"progress":[23],"in":[24,33],"organizing":[25,64],"disparate":[26],"biomedical":[27,112,136,153],"sources?":[29],"Imagine":[30],"a":[31,97,161],"system":[32],"which":[34],"one":[35],"could":[36],"bring":[37],"together":[38],"sequencing":[39],"with":[41],"phenotypes,":[42],"gene":[43],"expression":[44],"data,":[45],"clinical":[47],"information":[48,137],"all":[49],"under":[50],"the":[51,65,71,102,118],"same":[52],"conceptual":[53],"heading":[54],"where":[55],"applicable.":[56],"Bio-ontologies":[57],"seek":[58],"carry":[60],"out":[62],"by":[63,159],"relations":[66],"between":[67,109],"concepts":[68],"attaching":[70],"their":[74],"corresponding":[75],"concept.":[76],"However,":[77],"accomplish":[79],"this,":[80],"need":[82],"considerable":[83],"time":[84],"human":[86,92],"input.":[87],"Instead":[88],"resorting":[90],"input":[93],"alone,":[94],"describe":[96],"novel":[98],"approach":[99,124,158],"obtaining":[101,106],"foundation":[103],"for":[104,152,164],"bio-ontologies:":[105],"propositions":[107,140],"(links":[108],"concepts)":[110],"from":[111,129],"text":[113],"so":[114,141],"as":[115],"fill":[117],"ontology.":[119],"The":[120],"heart":[121],"our":[123],"is":[125],"applying":[126],"logic":[127,131,134],"rules":[128],"Aristotelian":[130],"derive":[139],"that":[142],"have":[145],"material":[146],"organize":[148],"knowledge":[149],"bases":[150],"(ontologies)":[151],"research.":[154],"We":[155],"demonstrate":[156],"constructing":[160],"proof-of-principle":[162],"bio-ontology":[163],"COVID-19":[165],"related":[167],"diseases.":[168]},"counts_by_year":[],"updated_date":"2026-04-17T18:11:37.981687","created_date":"2025-10-10T00:00:00"}
