{"id":"https://openalex.org/W4401906540","doi":"https://doi.org/10.3390/info15090523","title":"Computational Analysis of Marker Genes in Alzheimer\u2019s Disease across Multiple Brain Regions","display_name":"Computational Analysis of Marker Genes in Alzheimer\u2019s Disease across Multiple Brain Regions","publication_year":2024,"publication_date":"2024-08-27","ids":{"openalex":"https://openalex.org/W4401906540","doi":"https://doi.org/10.3390/info15090523"},"language":"en","primary_location":{"id":"doi:10.3390/info15090523","is_oa":true,"landing_page_url":"https://doi.org/10.3390/info15090523","pdf_url":"https://www.mdpi.com/2078-2489/15/9/523/pdf?version=1724765540","source":{"id":"https://openalex.org/S4210219776","display_name":"Information","issn_l":"2078-2489","issn":["2078-2489"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2078-2489/15/9/523/pdf?version=1724765540","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5106754878","display_name":"Panagiotis Karanikolaos","orcid":null},"institutions":[{"id":"https://openalex.org/I187792471","display_name":"Ionian University","ror":"https://ror.org/01xm4n520","country_code":"GR","type":"education","lineage":["https://openalex.org/I187792471"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Panagiotis Karanikolaos","raw_affiliation_strings":["Bioinformatics and Human Electrophysiology Laboratory, Department of Informatics, Ionian University, 49100 Corfu, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Human Electrophysiology Laboratory, Department of Informatics, Ionian University, 49100 Corfu, Greece","institution_ids":["https://openalex.org/I187792471"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001357889","display_name":"Marios G. Krokidis","orcid":"https://orcid.org/0000-0001-8608-6156"},"institutions":[{"id":"https://openalex.org/I187792471","display_name":"Ionian University","ror":"https://ror.org/01xm4n520","country_code":"GR","type":"education","lineage":["https://openalex.org/I187792471"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Marios G. Krokidis","raw_affiliation_strings":["Bioinformatics and Human Electrophysiology Laboratory, Department of Informatics, Ionian University, 49100 Corfu, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Human Electrophysiology Laboratory, Department of Informatics, Ionian University, 49100 Corfu, Greece","institution_ids":["https://openalex.org/I187792471"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104150275","display_name":"Themis P. Exarchos","orcid":null},"institutions":[{"id":"https://openalex.org/I187792471","display_name":"Ionian University","ror":"https://ror.org/01xm4n520","country_code":"GR","type":"education","lineage":["https://openalex.org/I187792471"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Themis P. Exarchos","raw_affiliation_strings":["Bioinformatics and Human Electrophysiology Laboratory, Department of Informatics, Ionian University, 49100 Corfu, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Human Electrophysiology Laboratory, Department of Informatics, Ionian University, 49100 Corfu, Greece","institution_ids":["https://openalex.org/I187792471"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002406655","display_name":"Panagiotis Vlamos","orcid":"https://orcid.org/0000-0003-0053-7847"},"institutions":[{"id":"https://openalex.org/I187792471","display_name":"Ionian University","ror":"https://ror.org/01xm4n520","country_code":"GR","type":"education","lineage":["https://openalex.org/I187792471"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Panagiotis Vlamos","raw_affiliation_strings":["Bioinformatics and Human Electrophysiology Laboratory, Department of Informatics, Ionian University, 49100 Corfu, Greece"],"raw_orcid":"https://orcid.org/0000-0003-0053-7847","affiliations":[{"raw_affiliation_string":"Bioinformatics and Human Electrophysiology Laboratory, Department of Informatics, Ionian University, 49100 Corfu, Greece","institution_ids":["https://openalex.org/I187792471"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5001357889"],"corresponding_institution_ids":["https://openalex.org/I187792471"],"apc_list":{"value":1600,"currency":"CHF","value_usd":1782},"apc_paid":{"value":1600,"currency":"CHF","value_usd":1782},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08094124,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"15","issue":"9","first_page":"523","last_page":"523"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11266","display_name":"Neuroinflammation and Neurodegeneration Mechanisms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.98089998960495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/entorhinal-cortex","display_name":"Entorhinal cortex","score":0.643142580986023},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.5700957179069519},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5455101132392883},{"id":"https://openalex.org/keywords/dementia","display_name":"Dementia","score":0.4421297609806061},{"id":"https://openalex.org/keywords/parahippocampal-gyrus","display_name":"Parahippocampal gyrus","score":0.4276983141899109},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.41558799147605896},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4067683219909668},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40017443895339966},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36892467737197876},{"id":"https://openalex.org/keywords/temporal-lobe","display_name":"Temporal lobe","score":0.2789615988731384},{"id":"https://openalex.org/keywords/hippocampus","display_name":"Hippocampus","score":0.2767924666404724},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.24694952368736267},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2193073332309723},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.13593387603759766}],"concepts":[{"id":"https://openalex.org/C2780715579","wikidata":"https://www.wikidata.org/wiki/Q2603645","display_name":"Entorhinal cortex","level":3,"score":0.643142580986023},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.5700957179069519},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5455101132392883},{"id":"https://openalex.org/C2779483572","wikidata":"https://www.wikidata.org/wiki/Q83030","display_name":"Dementia","level":3,"score":0.4421297609806061},{"id":"https://openalex.org/C2778048536","wikidata":"https://www.wikidata.org/wiki/Q1545429","display_name":"Parahippocampal gyrus","level":4,"score":0.4276983141899109},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.41558799147605896},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4067683219909668},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40017443895339966},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36892467737197876},{"id":"https://openalex.org/C2781099131","wikidata":"https://www.wikidata.org/wiki/Q744385","display_name":"Temporal lobe","level":3,"score":0.2789615988731384},{"id":"https://openalex.org/C2781161787","wikidata":"https://www.wikidata.org/wiki/Q48360","display_name":"Hippocampus","level":2,"score":0.2767924666404724},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.24694952368736267},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2193073332309723},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.13593387603759766},{"id":"https://openalex.org/C2778186239","wikidata":"https://www.wikidata.org/wiki/Q41571","display_name":"Epilepsy","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3390/info15090523","is_oa":true,"landing_page_url":"https://doi.org/10.3390/info15090523","pdf_url":"https://www.mdpi.com/2078-2489/15/9/523/pdf?version=1724765540","source":{"id":"https://openalex.org/S4210219776","display_name":"Information","issn_l":"2078-2489","issn":["2078-2489"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:3a5a791ae4b946a7971559c233c2f6a3","is_oa":false,"landing_page_url":"https://doaj.org/article/3a5a791ae4b946a7971559c233c2f6a3","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Information, Vol 15, Iss 9, p 523 (2024)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/2078-2489/15/9/523/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/info15090523","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Information","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/info15090523","is_oa":true,"landing_page_url":"https://doi.org/10.3390/info15090523","pdf_url":"https://www.mdpi.com/2078-2489/15/9/523/pdf?version=1724765540","source":{"id":"https://openalex.org/S4210219776","display_name":"Information","issn_l":"2078-2489","issn":["2078-2489"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4401906540.pdf"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W2735067671","https://openalex.org/W2802240694","https://openalex.org/W2926010705","https://openalex.org/W2942678593","https://openalex.org/W2985644141","https://openalex.org/W2998922852","https://openalex.org/W3042981350","https://openalex.org/W3094033375","https://openalex.org/W3096674342","https://openalex.org/W3112948680","https://openalex.org/W3134747685","https://openalex.org/W3151714526","https://openalex.org/W3193810047","https://openalex.org/W4213368951","https://openalex.org/W4214511315","https://openalex.org/W4220837089","https://openalex.org/W4282030358","https://openalex.org/W4310480924","https://openalex.org/W4321748231","https://openalex.org/W4367626026","https://openalex.org/W4376867947","https://openalex.org/W4385414106","https://openalex.org/W4387774515","https://openalex.org/W4388101526","https://openalex.org/W4393233514","https://openalex.org/W4395045805","https://openalex.org/W6770127396","https://openalex.org/W6793101644"],"related_works":["https://openalex.org/W2495853558","https://openalex.org/W2065056564","https://openalex.org/W2040242295","https://openalex.org/W2147707635","https://openalex.org/W2026345180","https://openalex.org/W1272003059","https://openalex.org/W2187003822","https://openalex.org/W2034362507","https://openalex.org/W4256216566","https://openalex.org/W2068134369"],"abstract_inverted_index":{"Alzheimer\u2019s":[0],"disease":[1,84,177],"(AD)":[2],"is":[3,15],"the":[4,12,42,45,63,80,83,86,92,126,172,176,180],"most":[5],"common":[6],"cause":[7],"of":[8,79,82,91,128,138,175,182],"neurodegenerative":[9],"dementia":[10],"in":[11,166],"elderly,":[13],"which":[14],"characterized":[16],"by":[17,28,41,158],"progressive":[18],"cognitive":[19],"impairment.":[20],"Herein,":[21],"we":[22],"undertake":[23],"a":[24,67,76,153,167],"sophisticated":[25],"computational":[26,97],"analysis":[27,69],"integrating":[29],"single-cell":[30],"RNA":[31],"sequencing":[32],"(scRNA-seq)":[33],"data":[34,129,162],"from":[35,62,130],"multiple":[36,131],"brain":[37],"regions":[38],"significantly":[39,134],"affected":[40],"disease,":[43],"including":[44],"entorhinal":[46],"cortex,":[47,49],"prefrontal":[48],"superior":[50,54],"frontal":[51],"gyrus,":[52],"and":[53,88,108,114,178,187],"parietal":[55],"lobe.":[56],"Our":[57,121],"pipeline":[58],"combines":[59],"datasets":[60],"derived":[61],"aforementioned":[64],"tissues":[65],"into":[66],"unified":[68],"framework,":[70],"facilitating":[71],"cross-regional":[72],"comparisons":[73],"to":[74,110,170],"provide":[75],"holistic":[77],"view":[78],"impact":[81],"on":[85],"cellular":[87,112],"molecular":[89,144],"landscape":[90],"brain.":[93],"We":[94],"employed":[95],"advanced":[96],"techniques":[98],"such":[99],"as":[100],"batch":[101],"effect":[102],"correction,":[103],"normalization,":[104],"dimensionality":[105],"reduction,":[106],"clustering,":[107],"visualization":[109],"explore":[111],"heterogeneity":[113],"gene":[115],"expression":[116],"patterns":[117],"across":[118],"these":[119],"regions.":[120],"findings":[122],"suggest":[123],"that":[124],"enabling":[125],"integration":[127],"batches":[132],"can":[133,163],"enhance":[135],"our":[136],"understanding":[137],"AD":[139],"complexity,":[140],"thereby":[141],"identifying":[142],"key":[143],"targets":[145],"for":[146,155],"potential":[147],"therapeutic":[148],"intervention.":[149],"This":[150],"study":[151],"established":[152],"precedent":[154],"future":[156],"research":[157],"demonstrating":[159],"how":[160],"existing":[161],"be":[164],"reanalysed":[165],"coherent":[168],"manner":[169],"elucidate":[171],"systemic":[173],"nature":[174],"inform":[179],"development":[181],"more":[183],"effective":[184],"diagnostic":[185],"tools":[186],"targeted":[188],"therapies.":[189]},"counts_by_year":[],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2024-08-28T00:00:00"}
