{"id":"https://openalex.org/W4409769385","doi":"https://doi.org/10.3390/e27050459","title":"Thoughtseeds: A Hierarchical and Agentic Framework for Investigating Thought Dynamics in Meditative States","display_name":"Thoughtseeds: A Hierarchical and Agentic Framework for Investigating Thought Dynamics in Meditative States","publication_year":2025,"publication_date":"2025-04-24","ids":{"openalex":"https://openalex.org/W4409769385","doi":"https://doi.org/10.3390/e27050459","pmid":"https://pubmed.ncbi.nlm.nih.gov/40422414"},"language":"en","primary_location":{"id":"doi:10.3390/e27050459","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e27050459","pdf_url":null,"source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.3390/e27050459","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107404950","display_name":"Prakash Chandra Kavi","orcid":"https://orcid.org/0000-0002-5582-0431"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Prakash Chandra Kavi","raw_affiliation_strings":["Center for Brain and Cognition, Universitat Pompeu Fabra, 08005 Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0002-5582-0431","affiliations":[{"raw_affiliation_string":"Center for Brain and Cognition, Universitat Pompeu Fabra, 08005 Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041371472","display_name":"Gorka Zamora\u2010L\u00f3pez","orcid":"https://orcid.org/0000-0001-9361-9619"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Gorka Zamora-L\u00f3pez","raw_affiliation_strings":["Center for Brain and Cognition, Universitat Pompeu Fabra, 08005 Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Brain and Cognition, Universitat Pompeu Fabra, 08005 Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102731228","display_name":"Daniel Friedman","orcid":"https://orcid.org/0000-0001-6232-9096"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Daniel Ari Friedman","raw_affiliation_strings":["Active Inference Institute, Davis, CA 95616, USA"],"raw_orcid":"https://orcid.org/0000-0001-6232-9096","affiliations":[{"raw_affiliation_string":"Active Inference Institute, Davis, CA 95616, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031440160","display_name":"Gustavo Patow","orcid":"https://orcid.org/0000-0002-1977-9101"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I251424209","display_name":"Universitat de Girona","ror":"https://ror.org/01xdxns91","country_code":"ES","type":"education","lineage":["https://openalex.org/I251424209"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Gustavo Patow","raw_affiliation_strings":["Center for Brain and Cognition, Universitat Pompeu Fabra, 08005 Barcelona, Spain","Department of Computer Science, Applied Mathematics and Statistics, University of Girona, 17003 Girona, Spain"],"raw_orcid":"https://orcid.org/0000-0002-1977-9101","affiliations":[{"raw_affiliation_string":"Center for Brain and Cognition, Universitat Pompeu Fabra, 08005 Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"Department of Computer Science, Applied Mathematics and Statistics, University of Girona, 17003 Girona, Spain","institution_ids":["https://openalex.org/I251424209"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5107404950"],"corresponding_institution_ids":["https://openalex.org/I170486558"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":3.5123,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.91157766,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"27","issue":"5","first_page":"459","last_page":"459"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13283","display_name":"Mental Health Research Topics","score":0.9882000088691711,"subfield":{"id":"https://openalex.org/subfields/3205","display_name":"Experimental and Cognitive Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T13283","display_name":"Mental Health Research Topics","score":0.9882000088691711,"subfield":{"id":"https://openalex.org/subfields/3205","display_name":"Experimental and Cognitive Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13219","display_name":"Mind wandering and attention","score":0.9846000075340271,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10708","display_name":"Mindfulness and Compassion Interventions","score":0.9836999773979187,"subfield":{"id":"https://openalex.org/subfields/3203","display_name":"Clinical Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dynamics","display_name":"Dynamics (music)","score":0.5794773101806641},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.43734633922576904},{"id":"https://openalex.org/keywords/cognitive-science","display_name":"Cognitive science","score":0.4265364408493042},{"id":"https://openalex.org/keywords/cognitive-psychology","display_name":"Cognitive psychology","score":0.41018834710121155},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.40226301550865173},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.39256125688552856},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3853227198123932},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.19078099727630615},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.18206310272216797}],"concepts":[{"id":"https://openalex.org/C145912823","wikidata":"https://www.wikidata.org/wiki/Q113558","display_name":"Dynamics (music)","level":2,"score":0.5794773101806641},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.43734633922576904},{"id":"https://openalex.org/C188147891","wikidata":"https://www.wikidata.org/wiki/Q147638","display_name":"Cognitive science","level":1,"score":0.4265364408493042},{"id":"https://openalex.org/C180747234","wikidata":"https://www.wikidata.org/wiki/Q23373","display_name":"Cognitive psychology","level":1,"score":0.41018834710121155},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.40226301550865173},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.39256125688552856},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3853227198123932},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.19078099727630615},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.18206310272216797},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3390/e27050459","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e27050459","pdf_url":null,"source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmid:40422414","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40422414","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy (Basel, Switzerland)","raw_type":null},{"id":"pmh:oai:doaj.org/article:ab67f43583e047ff9720c984b1d92cb6","is_oa":true,"landing_page_url":"https://doaj.org/article/ab67f43583e047ff9720c984b1d92cb6","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 27, Iss 5, p 459 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12110063","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12110063","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy (Basel)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/e27050459","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e27050459","pdf_url":null,"source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":90,"referenced_works":["https://openalex.org/W1456772534","https://openalex.org/W1515138319","https://openalex.org/W1971715144","https://openalex.org/W1987430298","https://openalex.org/W1994668160","https://openalex.org/W2001609097","https://openalex.org/W2005022581","https://openalex.org/W2015303758","https://openalex.org/W2019370496","https://openalex.org/W2020245429","https://openalex.org/W2026267776","https://openalex.org/W2027063265","https://openalex.org/W2027475699","https://openalex.org/W2031461126","https://openalex.org/W2038389566","https://openalex.org/W2047990541","https://openalex.org/W2055789905","https://openalex.org/W2059320470","https://openalex.org/W2076231613","https://openalex.org/W2084473597","https://openalex.org/W2090668679","https://openalex.org/W2103596824","https://openalex.org/W2103934527","https://openalex.org/W2112151839","https://openalex.org/W2113034208","https://openalex.org/W2115277246","https://openalex.org/W2122896223","https://openalex.org/W2124290596","https://openalex.org/W2137343861","https://openalex.org/W2139765609","https://openalex.org/W2142672241","https://openalex.org/W2143502460","https://openalex.org/W2144241704","https://openalex.org/W2162950292","https://openalex.org/W2279258536","https://openalex.org/W2307885823","https://openalex.org/W2308267779","https://openalex.org/W2325609400","https://openalex.org/W2335853028","https://openalex.org/W2394834952","https://openalex.org/W2410872259","https://openalex.org/W2434898965","https://openalex.org/W2490071178","https://openalex.org/W2493894436","https://openalex.org/W2523445223","https://openalex.org/W2559897504","https://openalex.org/W2564601941","https://openalex.org/W2587573685","https://openalex.org/W2597410197","https://openalex.org/W2623598950","https://openalex.org/W2756033535","https://openalex.org/W2761197918","https://openalex.org/W2795942420","https://openalex.org/W2857478301","https://openalex.org/W2923699604","https://openalex.org/W2943260997","https://openalex.org/W2945567094","https://openalex.org/W2989729815","https://openalex.org/W2996530576","https://openalex.org/W2998470023","https://openalex.org/W3009555114","https://openalex.org/W3017038961","https://openalex.org/W3035420228","https://openalex.org/W3039307250","https://openalex.org/W3084035636","https://openalex.org/W3093227611","https://openalex.org/W3100975282","https://openalex.org/W3109756151","https://openalex.org/W3109988478","https://openalex.org/W3133036396","https://openalex.org/W3160885204","https://openalex.org/W3162663886","https://openalex.org/W3198953255","https://openalex.org/W3212723250","https://openalex.org/W4237718205","https://openalex.org/W4289688858","https://openalex.org/W4293324367","https://openalex.org/W4295750005","https://openalex.org/W4298139715","https://openalex.org/W4362604006","https://openalex.org/W4366775400","https://openalex.org/W4381687242","https://openalex.org/W4391316085","https://openalex.org/W4401475631","https://openalex.org/W4403598809","https://openalex.org/W4405888578","https://openalex.org/W6673029105","https://openalex.org/W6676972896","https://openalex.org/W6852056391","https://openalex.org/W6857436229"],"related_works":["https://openalex.org/W1636325709","https://openalex.org/W2724817865","https://openalex.org/W2400992695","https://openalex.org/W2382944939","https://openalex.org/W2771969352","https://openalex.org/W1993066527","https://openalex.org/W4300802590","https://openalex.org/W4309734132","https://openalex.org/W1671315843","https://openalex.org/W2934102237"],"abstract_inverted_index":{"The":[0,160],"Thoughtseeds":[1],"Framework":[2],"introduces":[3],"a":[4,122,174],"novel":[5],"computational":[6,137],"approach":[7],"to":[8,93],"modeling":[9,138],"thought":[10],"dynamics":[11],"in":[12,197],"meditative":[13,124],"states,":[14],"conceptualizing":[15],"thoughtseeds":[16,47,120],"as":[17,28,39],"dynamic":[18],"attentional":[19,68],"agents":[20],"that":[21,88],"integrate":[22],"information.":[23],"This":[24],"hierarchical":[25],"model,":[26],"structured":[27],"nested":[29],"Markov":[30],"blankets,":[31],"comprises":[32],"three":[33],"interconnected":[34],"levels:":[35],"(i)":[36],"knowledge":[37],"domains":[38],"information":[40],"repositories,":[41],"(ii)":[42],"the":[43,112,116,192,207],"Thoughtseed":[44],"Network":[45],"where":[46],"compete,":[48],"and":[49,70,77,111,130,151,169,194,211],"(iii)":[50],"meta-cognition":[51],"regulating":[52],"awareness.":[53],"It":[54],"simulates":[55],"focused-attention":[56],"Vipassana":[57],"meditation":[58,157,170,182],"via":[59,133],"rule-based":[60],"training":[61],"informed":[62],"by":[63],"empirical":[64],"neuroscience":[65],"research":[66,179],"on":[67,147],"stability":[69],"neural":[71],"dynamics.":[72,85],"Four":[73],"states-breath_control,":[74],"mind_wandering,":[75],"meta_awareness,":[76],"redirect_breath-emerge":[78],"organically":[79],"from":[80],"thoughtseed":[81],"interactions,":[82],"demonstrating":[83],"self-organizing":[84],"Results":[86],"indicate":[87],"experts":[89],"sustain":[90],"control":[91],"dominance":[92],"reinforce":[94],"focused":[95],"attention,":[96],"while":[97],"novices":[98],"exhibit":[99],"frequent,":[100],"prolonged":[101],"mind_wandering":[102],"episodes,":[103],"reflecting":[104],"beginner":[105],"instability.":[106],"Integrating":[107],"Global":[108],"Workspace":[109],"Theory":[110],"Intrinsic":[113],"Ignition":[114],"Framework,":[115],"model":[117],"elucidates":[118],"how":[119],"shape":[121],"unitary":[123],"experience":[125],"through":[126],"meta-awareness,":[127],"balancing":[128],"epistemic":[129],"pragmatic":[131],"affordances":[132],"active":[134],"inference.":[135],"Synthesizing":[136],"with":[139],"phenomenological":[140],"insights,":[141],"it":[142],"provides":[143],"an":[144],"embodied":[145],"perspective":[146],"cognitive":[148,189],"state":[149,171],"emergence":[150],"transitions,":[152],"offering":[153],"testable":[154],"predictions":[155],"about":[156],"skill":[158],"development.":[159],"framework":[161],"yields":[162],"insights":[163],"into":[164,180],"attention":[165,201],"regulation,":[166],"meta-cognitive":[167],"awareness,":[168],"emergence,":[172],"establishing":[173],"versatile":[175],"foundation":[176],"for":[177,200],"future":[178],"diverse":[181],"practices":[183],"(e.g.,":[184],"Open":[185],"Monitoring,":[186],"Non-Dual":[187],"Awareness),":[188],"development":[190],"across":[191],"lifespan,":[193],"clinical":[195],"applications":[196],"mindfulness-based":[198],"interventions":[199],"disorders,":[202],"advancing":[203],"our":[204],"understanding":[205],"of":[206,209],"nature":[208],"mind":[210],"thought.":[212]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
