{"id":"https://openalex.org/W4396512136","doi":"https://doi.org/10.3390/e26050380","title":"Application of Recurrence Plot Analysis to Examine Dynamics of Biological Molecules on the Example of Aggregation of Seed Mucilage Components","display_name":"Application of Recurrence Plot Analysis to Examine Dynamics of Biological Molecules on the Example of Aggregation of Seed Mucilage Components","publication_year":2024,"publication_date":"2024-04-29","ids":{"openalex":"https://openalex.org/W4396512136","doi":"https://doi.org/10.3390/e26050380","pmid":"https://pubmed.ncbi.nlm.nih.gov/38785629"},"language":"en","primary_location":{"id":"doi:10.3390/e26050380","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e26050380","pdf_url":"https://www.mdpi.com/1099-4300/26/5/380/pdf?version=1714399266","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/26/5/380/pdf?version=1714399266","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071069512","display_name":"Piotr Sionkowski","orcid":"https://orcid.org/0000-0001-9752-7404"},"institutions":[{"id":"https://openalex.org/I4210122744","display_name":"Institute of Theoretical and Applied Informatics","ror":"https://ror.org/037p52j25","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210122744","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I99542240","display_name":"Polish Academy of Sciences","ror":"https://ror.org/01dr6c206","country_code":"PL","type":"government","lineage":["https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Piotr Sionkowski","raw_affiliation_strings":["Institute of Theoretical and Applied Informatics, Polish Academy of Sciences, ul. Ba\u0142tycka 5, 44-100 Gliwice, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Theoretical and Applied Informatics, Polish Academy of Sciences, ul. Ba\u0142tycka 5, 44-100 Gliwice, Poland","institution_ids":["https://openalex.org/I4210122744","https://openalex.org/I99542240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023711625","display_name":"Natalia Kruszewska","orcid":"https://orcid.org/0000-0002-3489-954X"},"institutions":[{"id":"https://openalex.org/I1300393620","display_name":"Bydgoszcz University of Science and Technology","ror":"https://ror.org/049eq0c58","country_code":"PL","type":"education","lineage":["https://openalex.org/I1300393620"]},{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Natalia Kruszewska","raw_affiliation_strings":["Group of Modeling of Physicochemical Processes, Faculty of Chemical Technology and Engineering, Bydgoszcz University of Science and Technology, 85-796 Bydgoszcz, Poland"],"affiliations":[{"raw_affiliation_string":"Group of Modeling of Physicochemical Processes, Faculty of Chemical Technology and Engineering, Bydgoszcz University of Science and Technology, 85-796 Bydgoszcz, Poland","institution_ids":["https://openalex.org/I686019","https://openalex.org/I1300393620"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088762667","display_name":"Agnieszka Kreitschitz","orcid":"https://orcid.org/0000-0002-3045-843X"},"institutions":[{"id":"https://openalex.org/I219388962","display_name":"University of Wroc\u0142aw","ror":"https://ror.org/00yae6e25","country_code":"PL","type":"education","lineage":["https://openalex.org/I219388962"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Agnieszka Kreitschitz","raw_affiliation_strings":["Department of Plant Developmental Biology, University of Wroc\u0142aw, ul. Kanonia 6/8, 50-328 Wroc\u0142aw, Poland"],"affiliations":[{"raw_affiliation_string":"Department of Plant Developmental Biology, University of Wroc\u0142aw, ul. Kanonia 6/8, 50-328 Wroc\u0142aw, Poland","institution_ids":["https://openalex.org/I219388962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062162459","display_name":"Stanislav N. Gorb","orcid":"https://orcid.org/0000-0001-9712-7953"},"institutions":[{"id":"https://openalex.org/I32021983","display_name":"Christian-Albrechts-Universit\u00e4t zu Kiel","ror":"https://ror.org/04v76ef78","country_code":"DE","type":"education","lineage":["https://openalex.org/I32021983"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stanislav N. Gorb","raw_affiliation_strings":["Department of Functional Morphology and Biomechanics, Kiel University, Am Botanischen Garten 1-9, D-24098 Kiel, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Functional Morphology and Biomechanics, Kiel University, Am Botanischen Garten 1-9, D-24098 Kiel, Germany","institution_ids":["https://openalex.org/I32021983"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074963993","display_name":"Krzysztof Domino","orcid":"https://orcid.org/0000-0001-7386-5441"},"institutions":[{"id":"https://openalex.org/I4210122744","display_name":"Institute of Theoretical and Applied Informatics","ror":"https://ror.org/037p52j25","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210122744","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I99542240","display_name":"Polish Academy of Sciences","ror":"https://ror.org/01dr6c206","country_code":"PL","type":"government","lineage":["https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Krzysztof Domino","raw_affiliation_strings":["Institute of Theoretical and Applied Informatics, Polish Academy of Sciences, ul. Ba\u0142tycka 5, 44-100 Gliwice, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Theoretical and Applied Informatics, Polish Academy of Sciences, ul. Ba\u0142tycka 5, 44-100 Gliwice, Poland","institution_ids":["https://openalex.org/I4210122744","https://openalex.org/I99542240"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5023711625"],"corresponding_institution_ids":["https://openalex.org/I1300393620","https://openalex.org/I686019"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":2.9996,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.90391959,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"26","issue":"5","first_page":"380","last_page":"380"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10869","display_name":"Polysaccharides and Plant Cell Walls","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10869","display_name":"Polysaccharides and Plant Cell Walls","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mucilage","display_name":"Mucilage","score":0.895581841468811},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.6617134809494019},{"id":"https://openalex.org/keywords/plot","display_name":"Plot (graphics)","score":0.49864888191223145},{"id":"https://openalex.org/keywords/recurrence-plot","display_name":"Recurrence plot","score":0.4648548364639282},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4337884485721588},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.33048662543296814},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3286336064338684},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2292841672897339},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.153438001871109},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.1306551992893219},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11723434925079346}],"concepts":[{"id":"https://openalex.org/C99696124","wikidata":"https://www.wikidata.org/wiki/Q424275","display_name":"Mucilage","level":2,"score":0.895581841468811},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.6617134809494019},{"id":"https://openalex.org/C167651023","wikidata":"https://www.wikidata.org/wiki/Q1474611","display_name":"Plot (graphics)","level":2,"score":0.49864888191223145},{"id":"https://openalex.org/C173134143","wikidata":"https://www.wikidata.org/wiki/Q2797953","display_name":"Recurrence plot","level":3,"score":0.4648548364639282},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4337884485721588},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.33048662543296814},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3286336064338684},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2292841672897339},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.153438001871109},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.1306551992893219},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11723434925079346},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C158622935","wikidata":"https://www.wikidata.org/wiki/Q660848","display_name":"Nonlinear system","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3390/e26050380","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e26050380","pdf_url":"https://www.mdpi.com/1099-4300/26/5/380/pdf?version=1714399266","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmid:38785629","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38785629","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy (Basel, Switzerland)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11119629","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11119629","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy (Basel)","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:b6429a60c9654b5c97a79947f2e1cbe7","is_oa":true,"landing_page_url":"https://doaj.org/article/b6429a60c9654b5c97a79947f2e1cbe7","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 26, Iss 5, p 380 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/e26050380","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e26050380","pdf_url":"https://www.mdpi.com/1099-4300/26/5/380/pdf?version=1714399266","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4396512136.pdf"},"referenced_works_count":82,"referenced_works":["https://openalex.org/W344551303","https://openalex.org/W1495874250","https://openalex.org/W1963514652","https://openalex.org/W1964498130","https://openalex.org/W1965243534","https://openalex.org/W1969035250","https://openalex.org/W1977561071","https://openalex.org/W1981467314","https://openalex.org/W1997540084","https://openalex.org/W1998829408","https://openalex.org/W2001299719","https://openalex.org/W2010461070","https://openalex.org/W2010768659","https://openalex.org/W2013738595","https://openalex.org/W2021520922","https://openalex.org/W2025461894","https://openalex.org/W2027408247","https://openalex.org/W2032319886","https://openalex.org/W2035266068","https://openalex.org/W2035687084","https://openalex.org/W2035841875","https://openalex.org/W2043948540","https://openalex.org/W2050524419","https://openalex.org/W2070753604","https://openalex.org/W2074099991","https://openalex.org/W2081681829","https://openalex.org/W2095797433","https://openalex.org/W2098943363","https://openalex.org/W2106728647","https://openalex.org/W2108368616","https://openalex.org/W2109713924","https://openalex.org/W2124515732","https://openalex.org/W2132262459","https://openalex.org/W2140850983","https://openalex.org/W2144288821","https://openalex.org/W2154792548","https://openalex.org/W2164603308","https://openalex.org/W2223094112","https://openalex.org/W2306793912","https://openalex.org/W2340164300","https://openalex.org/W2346109073","https://openalex.org/W2404280981","https://openalex.org/W2478951213","https://openalex.org/W2486800171","https://openalex.org/W2489487403","https://openalex.org/W2557952175","https://openalex.org/W2565384781","https://openalex.org/W2588920595","https://openalex.org/W2610184065","https://openalex.org/W2752060650","https://openalex.org/W2764315736","https://openalex.org/W2818838409","https://openalex.org/W2883172416","https://openalex.org/W2884367402","https://openalex.org/W2902882221","https://openalex.org/W2944097904","https://openalex.org/W2993627123","https://openalex.org/W3010246639","https://openalex.org/W3017097154","https://openalex.org/W3035063563","https://openalex.org/W3048128012","https://openalex.org/W3087077445","https://openalex.org/W3111041176","https://openalex.org/W3132232428","https://openalex.org/W3163514413","https://openalex.org/W3166725674","https://openalex.org/W3176811053","https://openalex.org/W3213359272","https://openalex.org/W3217371472","https://openalex.org/W4212836702","https://openalex.org/W4220982735","https://openalex.org/W4252174979","https://openalex.org/W4253164051","https://openalex.org/W4283071324","https://openalex.org/W4293087161","https://openalex.org/W4297225273","https://openalex.org/W4313432309","https://openalex.org/W4320002812","https://openalex.org/W4362523272","https://openalex.org/W4386608045","https://openalex.org/W4390954651","https://openalex.org/W6675128902"],"related_works":["https://openalex.org/W1997540084","https://openalex.org/W1979669184","https://openalex.org/W71658644","https://openalex.org/W2047528632","https://openalex.org/W2113640125","https://openalex.org/W4320303648","https://openalex.org/W4280500492","https://openalex.org/W2245242553","https://openalex.org/W2241588737","https://openalex.org/W3214510223"],"abstract_inverted_index":{"The":[0,33,51,85],"goal":[1],"of":[2,42,53,82,122,130,133,142,144,147,152,155,157,160,175,182,185,192],"the":[3,8,12,30,59,66,70,79,83,113,131,134,166,173,179,183,190],"research":[4],"is":[5,38,56,90,201],"to":[6,102,196],"describe":[7],"aggregation":[9,67],"process":[10,68],"inside":[11],"mucilage":[13,40,124],"produced":[14],"by":[15],"plant":[16],"seeds":[17],"using":[18],"molecular":[19],"dynamics":[20,132,141],"(MD)":[21],"combined":[22],"with":[23,139,178],"time":[24,95,104],"series":[25,96,105],"algorithmic":[26,120],"analysis":[27,97,121,174],"based":[28,57],"on":[29,58],"recurrence":[31,87,186,193],"plots.":[32],"studied":[34],"biological":[35,54,176],"molecules":[36,55,177],"model":[37],"seed":[39,123],"composed":[41],"three":[43],"main":[44],"polysaccharides,":[45],"i.e.":[46],"pectins,":[47],"hemicellulose,":[48],"and":[49,98,150],"cellulose.":[50],"modeling":[52],"assumption":[60],"that":[61,118],"a":[62,145,158],"classical-quantum":[63],"passage":[64],"underlies":[65],"in":[69],"mucilage,":[71],"resulting":[72],"from":[73,108],"non-covalent":[74],"interactions,":[75],"as":[76,189],"they":[77],"affect":[78],"macroscopic":[80],"properties":[81],"system.":[84],"applied":[86],"plot":[88,187,194],"approach":[89],"an":[91],"important":[92],"tool":[93],"for":[94,168,172],"data":[99,106,125],"mining":[100],"dedicated":[101],"analyzing":[103],"originating":[107],"complex,":[109],"chaotic":[110],"systems.":[111],"In":[112],"current":[114],"research,":[115],"we":[116,164],"demonstrated":[117],"advanced":[119],"can":[126],"reveal":[127],"some":[128],"features":[129],"system,":[135],"namely":[136],"temperature-dependent":[137],"regions":[138,151],"different":[140],"increments":[143,156],"number":[146,159],"hydrogen":[148],"bonds":[149],"stable":[153],"oscillation":[154],"hydrophobic-polar":[161],"interactions.":[162],"Henceforth,":[163],"pave":[165],"path":[167],"automatic":[169],"data-mining":[170],"methods":[171],"intermediate":[180],"step":[181],"application":[184],"analysis,":[188],"generalization":[191],"applications":[195],"other":[197],"(biological":[198],"molecules)":[199],"datasets":[200],"straightforward.":[202]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
