{"id":"https://openalex.org/W4387777190","doi":"https://doi.org/10.3390/e25101463","title":"Novel Entropy-Based Phylogenetic Algorithm: A New Approach for Classifying SARS-CoV-2 Variants","display_name":"Novel Entropy-Based Phylogenetic Algorithm: A New Approach for Classifying SARS-CoV-2 Variants","publication_year":2023,"publication_date":"2023-10-19","ids":{"openalex":"https://openalex.org/W4387777190","doi":"https://doi.org/10.3390/e25101463","pmid":"https://pubmed.ncbi.nlm.nih.gov/37895584"},"language":"en","primary_location":{"id":"doi:10.3390/e25101463","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e25101463","pdf_url":"https://www.mdpi.com/1099-4300/25/10/1463/pdf?version=1697687829","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/25/10/1463/pdf?version=1697687829","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048731768","display_name":"Vladimir Perovi\u0107","orcid":"https://orcid.org/0000-0002-3700-6452"},"institutions":[{"id":"https://openalex.org/I4210090859","display_name":"Biomed Protection (United States)","ror":"https://ror.org/009rg7s27","country_code":"US","type":"company","lineage":["https://openalex.org/I4210090859"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vladimir Perovic","raw_affiliation_strings":["Biomed Protection, Galveston, TX 77550, USA"],"affiliations":[{"raw_affiliation_string":"Biomed Protection, Galveston, TX 77550, USA","institution_ids":["https://openalex.org/I4210090859"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056664099","display_name":"Sanja Gli\u0161i\u0107","orcid":"https://orcid.org/0000-0001-5691-1055"},"institutions":[{"id":"https://openalex.org/I4210090859","display_name":"Biomed Protection (United States)","ror":"https://ror.org/009rg7s27","country_code":"US","type":"company","lineage":["https://openalex.org/I4210090859"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sanja Glisic","raw_affiliation_strings":["Biomed Protection, Galveston, TX 77550, USA"],"affiliations":[{"raw_affiliation_string":"Biomed Protection, Galveston, TX 77550, USA","institution_ids":["https://openalex.org/I4210090859"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027873960","display_name":"Milena Veljkovic","orcid":null},"institutions":[{"id":"https://openalex.org/I4210090859","display_name":"Biomed Protection (United States)","ror":"https://ror.org/009rg7s27","country_code":"US","type":"company","lineage":["https://openalex.org/I4210090859"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Milena Veljkovic","raw_affiliation_strings":["Biomed Protection, Galveston, TX 77550, USA"],"affiliations":[{"raw_affiliation_string":"Biomed Protection, Galveston, TX 77550, USA","institution_ids":["https://openalex.org/I4210090859"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028744430","display_name":"Slobodan Paessler","orcid":"https://orcid.org/0000-0002-2213-9551"},"institutions":[{"id":"https://openalex.org/I55302922","display_name":"The University of Texas Medical Branch at Galveston","ror":"https://ror.org/016tfm930","country_code":"US","type":"education","lineage":["https://openalex.org/I55302922"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Slobodan Paessler","raw_affiliation_strings":["Galveston National Laboratory, Department of Pathology, University of Texas Medical Branch, Galveston, TX 77555, USA"],"affiliations":[{"raw_affiliation_string":"Galveston National Laboratory, Department of Pathology, University of Texas Medical Branch, Galveston, TX 77555, USA","institution_ids":["https://openalex.org/I55302922"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034001471","display_name":"Veljko Veljkovi\u0107","orcid":"https://orcid.org/0000-0002-1980-0927"},"institutions":[{"id":"https://openalex.org/I4210090859","display_name":"Biomed Protection (United States)","ror":"https://ror.org/009rg7s27","country_code":"US","type":"company","lineage":["https://openalex.org/I4210090859"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Veljko Veljkovic","raw_affiliation_strings":["Biomed Protection, Galveston, TX 77550, USA"],"affiliations":[{"raw_affiliation_string":"Biomed Protection, Galveston, TX 77550, USA","institution_ids":["https://openalex.org/I4210090859"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5034001471"],"corresponding_institution_ids":["https://openalex.org/I4210090859"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":0.5761,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.66613571,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"25","issue":"10","first_page":"1463","last_page":"1463"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.6073737144470215},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.5294874310493469},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5059415698051453},{"id":"https://openalex.org/keywords/entropy","display_name":"Entropy (arrow of time)","score":0.5039836764335632},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5034148097038269},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4942755699157715},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.45020100474357605},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.37022626399993896},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24485835433006287},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19203636050224304},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11153936386108398},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.08876311779022217}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6073737144470215},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.5294874310493469},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5059415698051453},{"id":"https://openalex.org/C106301342","wikidata":"https://www.wikidata.org/wiki/Q4117933","display_name":"Entropy (arrow of time)","level":2,"score":0.5039836764335632},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5034148097038269},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4942755699157715},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.45020100474357605},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37022626399993896},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24485835433006287},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19203636050224304},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11153936386108398},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.08876311779022217},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3390/e25101463","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e25101463","pdf_url":"https://www.mdpi.com/1099-4300/25/10/1463/pdf?version=1697687829","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmid:37895584","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37895584","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy (Basel, Switzerland)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10606860","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10606860","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10606860/pdf/entropy-25-01463.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy (Basel)","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:c2d79d7b3e3d4ac28e00c2505acda747","is_oa":true,"landing_page_url":"https://doaj.org/article/c2d79d7b3e3d4ac28e00c2505acda747","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 25, Iss 10, p 1463 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/e25101463","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e25101463","pdf_url":"https://www.mdpi.com/1099-4300/25/10/1463/pdf?version=1697687829","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.47999998927116394}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4387777190.pdf"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1969292660","https://openalex.org/W1984357741","https://openalex.org/W1984467897","https://openalex.org/W1993538659","https://openalex.org/W2030966943","https://openalex.org/W2144792974","https://openalex.org/W2799524357","https://openalex.org/W2914884817","https://openalex.org/W3122965112","https://openalex.org/W4225492776","https://openalex.org/W4254275792","https://openalex.org/W4282936226","https://openalex.org/W4282942003","https://openalex.org/W4313488627"],"related_works":["https://openalex.org/W4206669628","https://openalex.org/W4205317059","https://openalex.org/W3176864053","https://openalex.org/W3198183218","https://openalex.org/W4205810683","https://openalex.org/W4224279380","https://openalex.org/W4206548596","https://openalex.org/W4206651655","https://openalex.org/W4292098121","https://openalex.org/W3084498529"],"abstract_inverted_index":{"The":[0],"SARS-CoV-2":[1,143],"virus,":[2],"the":[3,29,47,62,98,101,128,167],"causative":[4],"agent":[5],"of":[6,16,23,51,100,106,130,158,171],"COVID-19,":[7],"is":[8],"known":[9],"for":[10,140],"its":[11],"genetic":[12],"diversity.":[13],"Virus":[14],"variants":[15,22,53,144],"concern":[17],"(VOCs)":[18],"as":[19,21,92],"well":[20],"interest":[24],"(VOIs)":[25],"are":[26],"classified":[27],"by":[28,54],"World":[30],"Health":[31],"Organization":[32],"(WHO)":[33],"according":[34],"to":[35,39,45,120,166],"their":[36],"potential":[37,104,146,164],"risk":[38],"global":[40,178],"health.":[41],"This":[42,111,133],"study":[43],"seeks":[44],"enhance":[46],"identification":[48],"and":[49,76,117,126,156,169,176,182],"classification":[50,170],"such":[52],"developing":[55],"a":[56,67,77,85,93,114,137],"novel":[57],"bioinformatics":[58],"criterion":[59],"centered":[60],"on":[61,97],"virus's":[63],"spike":[64],"protein":[65],"(SP1),":[66],"key":[68],"player":[69],"in":[70,109],"host":[71],"cell":[72],"entry,":[73],"immune":[74],"response,":[75],"mutational":[78],"hotspot.":[79],"To":[80],"achieve":[81],"this,":[82],"we":[83],"pioneered":[84],"unique":[86],"phylogenetic":[87],"algorithm":[88],"which":[89],"calculates":[90],"EIIP-entropy":[91],"distance":[94],"measure":[95],"based":[96],"distribution":[99],"electron-ion":[102],"interaction":[103],"(EIIP)":[105],"amino":[107],"acids":[108],"SP1.":[110],"method":[112],"offers":[113],"comprehensive,":[115],"scalable,":[116],"rapid":[118],"approach":[119,135],"analyze":[121],"large":[122],"genomic":[123],"data":[124],"sets":[125],"predict":[127],"impact":[129],"specific":[131],"mutations.":[132],"innovative":[134],"provides":[136],"robust":[138],"tool":[139],"classifying":[141],"emergent":[142],"into":[145],"VOCs":[147],"or":[148],"VOIs.":[149],"It":[150],"could":[151],"significantly":[152],"augment":[153],"surveillance":[154],"efforts":[155],"understanding":[157],"variant":[159],"characteristics,":[160],"while":[161],"also":[162],"offering":[163],"applicability":[165],"analysis":[168],"other":[172],"emerging":[173,181],"viral":[174,184],"pathogens":[175],"enhancing":[177],"readiness":[179],"against":[180],"re-emerging":[183],"pathogens.":[185]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
