{"id":"https://openalex.org/W4366281016","doi":"https://doi.org/10.3390/e25040676","title":"Ranking Plant Network Nodes Based on Their Centrality Measures","display_name":"Ranking Plant Network Nodes Based on Their Centrality Measures","publication_year":2023,"publication_date":"2023-04-18","ids":{"openalex":"https://openalex.org/W4366281016","doi":"https://doi.org/10.3390/e25040676","pmid":"https://pubmed.ncbi.nlm.nih.gov/37190464"},"language":"en","primary_location":{"id":"doi:10.3390/e25040676","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e25040676","pdf_url":"https://www.mdpi.com/1099-4300/25/4/676/pdf?version=1681800698","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/25/4/676/pdf?version=1681800698","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000760930","display_name":"Nilesh Kumar","orcid":"https://orcid.org/0000-0001-6095-7902"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nilesh Kumar","raw_affiliation_strings":["Department of Biology, University of Alabama at Birmingham, Birmingham, AL 35294, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Alabama at Birmingham, Birmingham, AL 35294, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018450899","display_name":"M. Shahid Mukhtar","orcid":"https://orcid.org/0000-0002-1104-6931"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"M. Shahid Mukhtar","raw_affiliation_strings":["Department of Biology, University of Alabama at Birmingham, Birmingham, AL 35294, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Alabama at Birmingham, Birmingham, AL 35294, USA","institution_ids":["https://openalex.org/I32389192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5018450899"],"corresponding_institution_ids":["https://openalex.org/I32389192"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":4.2944,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.94713159,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"25","issue":"4","first_page":"676","last_page":"676"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9882000088691711,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13127","display_name":"Biotin and Related Studies","score":0.9735999703407288,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/centrality","display_name":"Centrality","score":0.8838363885879517},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6782528162002563},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.6566619277000427},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.5306174755096436},{"id":"https://openalex.org/keywords/complex-network","display_name":"Complex network","score":0.4863177239894867},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4790831208229065},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4282605051994324},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34624484181404114},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.2971796691417694},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.179035484790802},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17472606897354126},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08444464206695557}],"concepts":[{"id":"https://openalex.org/C53811970","wikidata":"https://www.wikidata.org/wiki/Q5062194","display_name":"Centrality","level":2,"score":0.8838363885879517},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6782528162002563},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.6566619277000427},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.5306174755096436},{"id":"https://openalex.org/C34947359","wikidata":"https://www.wikidata.org/wiki/Q665189","display_name":"Complex network","level":2,"score":0.4863177239894867},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4790831208229065},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4282605051994324},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34624484181404114},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2971796691417694},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.179035484790802},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17472606897354126},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08444464206695557},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3390/e25040676","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e25040676","pdf_url":"https://www.mdpi.com/1099-4300/25/4/676/pdf?version=1681800698","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmid:37190464","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37190464","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy (Basel, Switzerland)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10137616","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10137616","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10137616/pdf/entropy-25-00676.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy (Basel)","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:c169cae685124038b57268be752f1feb","is_oa":true,"landing_page_url":"https://doaj.org/article/c169cae685124038b57268be752f1feb","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 25, Iss 4, p 676 (2023)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/1099-4300/25/4/676/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/e25040676","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy; Volume 25; Issue 4; Pages: 676","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/e25040676","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e25040676","pdf_url":"https://www.mdpi.com/1099-4300/25/4/676/pdf?version=1681800698","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3289875263","display_name":null,"funder_award_id":"IOS-2038872","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8686665284","display_name":null,"funder_award_id":"2038872","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4366281016.pdf"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W933881244","https://openalex.org/W1923336327","https://openalex.org/W1966327575","https://openalex.org/W2056782561","https://openalex.org/W2110553827","https://openalex.org/W2119220491","https://openalex.org/W2146545950","https://openalex.org/W2190610723","https://openalex.org/W2470340022","https://openalex.org/W2512308096","https://openalex.org/W2592729027","https://openalex.org/W2744625048","https://openalex.org/W2770983033","https://openalex.org/W2800351704","https://openalex.org/W2900418488","https://openalex.org/W2900569176","https://openalex.org/W2901834526","https://openalex.org/W2928665623","https://openalex.org/W2930902918","https://openalex.org/W2940986207","https://openalex.org/W2962756421","https://openalex.org/W2967039833","https://openalex.org/W3003240653","https://openalex.org/W3006862509","https://openalex.org/W3023076637","https://openalex.org/W3046382549","https://openalex.org/W3101092195","https://openalex.org/W3102432178","https://openalex.org/W3118594101","https://openalex.org/W3142318815","https://openalex.org/W3171658775","https://openalex.org/W4224291130","https://openalex.org/W4248776151","https://openalex.org/W4297571622","https://openalex.org/W4298148459","https://openalex.org/W6707620307","https://openalex.org/W6843620753"],"related_works":["https://openalex.org/W1992392028","https://openalex.org/W2578454336","https://openalex.org/W2574428786","https://openalex.org/W4293491684","https://openalex.org/W4290830324","https://openalex.org/W2169890516","https://openalex.org/W4323542959","https://openalex.org/W3014362800","https://openalex.org/W2336819277","https://openalex.org/W3106518003"],"abstract_inverted_index":{"Biological":[0],"networks":[1],"are":[2,20],"often":[3],"large":[4],"and":[5,50,71,77,84,132,135],"complex,":[6],"making":[7],"it":[8],"difficult":[9],"to":[10,22,81,138],"accurately":[11],"identify":[12,23],"the":[13,24,45,48,51,100,109,139],"most":[14,25],"important":[15],"nodes.":[16,38,55,73,96],"Node":[17],"prioritization":[18],"algorithms":[19,40,80,101],"used":[21],"influential":[26],"nodes":[27,63,112],"in":[28,87],"a":[29,66],"biological":[30],"network":[31,49],"by":[32,114],"considering":[33],"their":[34],"relationships":[35],"with":[36],"other":[37,79,140],"These":[39],"can":[41],"help":[42],"us":[43],"understand":[44],"functioning":[46],"of":[47,53,68,99,108],"role":[52],"individual":[54],"We":[56,74],"developed":[57],"CentralityCosDist,":[58],"an":[59],"algorithm":[60],"that":[61],"ranks":[62],"based":[64],"on":[65],"combination":[67],"centrality":[69],"measures":[70],"seed":[72,95],"applied":[75],"this":[76],"four":[78],"protein-protein":[82],"interactions":[83,131],"co-expression":[85],"patterns":[86],"<i>Arabidopsis":[88],"thaliana</i>":[89],"using":[90],"pathogen":[91],"effector":[92],"targets":[93],"as":[94],"The":[97],"accuracy":[98],"was":[102],"evaluated":[103],"through":[104],"functional":[105],"enrichment":[106],"analysis":[107],"top":[110],"10":[111],"identified":[113,128],"each":[115],"algorithm.":[116],"Most":[117],"enriched":[118],"terms":[119],"were":[120],"similar":[121],"across":[122],"algorithms,":[123],"except":[124],"for":[125],"DIAMOnD.":[126],"CentralityCosDist":[127],"more":[129],"plant-pathogen":[130],"related":[133],"functions":[134],"pathways":[136],"compared":[137],"algorithms.":[141]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":3}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}