{"id":"https://openalex.org/W4319983519","doi":"https://doi.org/10.3390/e25020319","title":"Characterizing the Impact of Communication on Cellular and Collective Behavior Using a Three-Dimensional Multiscale Cellular Model","display_name":"Characterizing the Impact of Communication on Cellular and Collective Behavior Using a Three-Dimensional Multiscale Cellular Model","publication_year":2023,"publication_date":"2023-02-09","ids":{"openalex":"https://openalex.org/W4319983519","doi":"https://doi.org/10.3390/e25020319","pmid":"https://pubmed.ncbi.nlm.nih.gov/36832685"},"language":"en","primary_location":{"id":"doi:10.3390/e25020319","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3390/e25020319","pdf_url":"https://www.mdpi.com/1099-4300/25/2/319/pdf?version=1676948049","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/25/2/319/pdf?version=1676948049","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074428907","display_name":"Moriah Echlin","orcid":"https://orcid.org/0000-0003-1069-1792"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]},{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["FI","US"],"is_corresponding":false,"raw_author_name":"Moriah Echlin","raw_affiliation_strings":["Institute for Systems Biology, Seattle, WA 98109, USA","Prostate Cancer Research Center, Faculty of Medicine and Health Technology, Tampere University, FI-33014 Tampere, Finland"],"raw_orcid":"https://orcid.org/0000-0003-1069-1792","affiliations":[{"raw_affiliation_string":"Institute for Systems Biology, Seattle, WA 98109, USA","institution_ids":["https://openalex.org/I3148997608"]},{"raw_affiliation_string":"Prostate Cancer Research Center, Faculty of Medicine and Health Technology, Tampere University, FI-33014 Tampere, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091465954","display_name":"Boris Aguilar","orcid":"https://orcid.org/0000-0002-9840-5908"},"institutions":[{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Boris Aguilar","raw_affiliation_strings":["Institute for Systems Biology, Seattle, WA 98109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Systems Biology, Seattle, WA 98109, USA","institution_ids":["https://openalex.org/I3148997608"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061460061","display_name":"Ilya Shmulevich","orcid":"https://orcid.org/0000-0002-4410-8780"},"institutions":[{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ilya Shmulevich","raw_affiliation_strings":["Institute for Systems Biology, Seattle, WA 98109, USA"],"raw_orcid":"https://orcid.org/0000-0002-4410-8780","affiliations":[{"raw_affiliation_string":"Institute for Systems Biology, Seattle, WA 98109, USA","institution_ids":["https://openalex.org/I3148997608"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5061460061"],"corresponding_institution_ids":["https://openalex.org/I3148997608"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2227},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2227},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00762261,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"25","issue":"2","first_page":"319","last_page":"319"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13052","display_name":"Molecular Communication and Nanonetworks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13052","display_name":"Molecular Communication and Nanonetworks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12789","display_name":"Planarian Biology and Electrostimulation","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multicellular-organism","display_name":"Multicellular organism","score":0.7691013813018799},{"id":"https://openalex.org/keywords/cellular-communication","display_name":"Cellular communication","score":0.6576662063598633},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5494174957275391},{"id":"https://openalex.org/keywords/cellular-network","display_name":"Cellular network","score":0.5452774167060852},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5372355580329895},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4918673038482666},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.45082661509513855},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.41687777638435364},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3335161805152893},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3183448314666748},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.29600995779037476},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.17404776811599731},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.13488668203353882},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.12279608845710754}],"concepts":[{"id":"https://openalex.org/C74318829","wikidata":"https://www.wikidata.org/wiki/Q36458","display_name":"Multicellular organism","level":3,"score":0.7691013813018799},{"id":"https://openalex.org/C30436405","wikidata":"https://www.wikidata.org/wiki/Q210973","display_name":"Cellular communication","level":3,"score":0.6576662063598633},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5494174957275391},{"id":"https://openalex.org/C153646914","wikidata":"https://www.wikidata.org/wiki/Q535695","display_name":"Cellular network","level":2,"score":0.5452774167060852},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5372355580329895},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4918673038482666},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.45082661509513855},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.41687777638435364},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3335161805152893},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3183448314666748},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.29600995779037476},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.17404776811599731},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.13488668203353882},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.12279608845710754},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.3390/e25020319","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3390/e25020319","pdf_url":"https://www.mdpi.com/1099-4300/25/2/319/pdf?version=1676948049","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmid:36832685","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36832685","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy (Basel, Switzerland)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9955575","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9955575","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9955575/pdf/entropy-25-00319.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy (Basel)","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:e1e93d091c644d5798059f2025e5dfd9","is_oa":true,"landing_page_url":"https://doaj.org/article/e1e93d091c644d5798059f2025e5dfd9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 25, Iss 2, p 319 (2023)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/1099-4300/25/2/319/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/e25020319","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy","raw_type":"Text"},{"id":"pmh:oai:trepo.tuni.fi:10024/208029","is_oa":true,"landing_page_url":"https://trepo.tuni.fi/handle/10024/208029","pdf_url":null,"source":{"id":"https://openalex.org/S4306401860","display_name":"Tampere University Institutional Repository (Tampere University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I150589677","host_organization_name":"Tampere University of Applied Sciences","host_organization_lineage":["https://openalex.org/I150589677"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"publishedVersion"}],"best_oa_location":{"id":"doi:10.3390/e25020319","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3390/e25020319","pdf_url":"https://www.mdpi.com/1099-4300/25/2/319/pdf?version=1676948049","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Decent work and economic growth","score":0.6600000262260437,"id":"https://metadata.un.org/sdg/8"}],"awards":[{"id":"https://openalex.org/G4509680172","display_name":"Graduate Research Fellowship Program (GRFP)","funder_award_id":"1762114","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5349147518","display_name":null,"funder_award_id":"-1762114","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8497923736","display_name":null,"funder_award_id":"DGE-1762114","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4319983519.pdf"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W1501606775","https://openalex.org/W1528999671","https://openalex.org/W1593038806","https://openalex.org/W1795442128","https://openalex.org/W1830427486","https://openalex.org/W1865723521","https://openalex.org/W1969547738","https://openalex.org/W1976811090","https://openalex.org/W2012883564","https://openalex.org/W2014395131","https://openalex.org/W2024798974","https://openalex.org/W2025870792","https://openalex.org/W2027576577","https://openalex.org/W2027677131","https://openalex.org/W2043535514","https://openalex.org/W2053032578","https://openalex.org/W2053961182","https://openalex.org/W2054531168","https://openalex.org/W2068259406","https://openalex.org/W2071199204","https://openalex.org/W2071986069","https://openalex.org/W2078084132","https://openalex.org/W2080721009","https://openalex.org/W2081466838","https://openalex.org/W2085293124","https://openalex.org/W2087332832","https://openalex.org/W2094338015","https://openalex.org/W2094552408","https://openalex.org/W2097337180","https://openalex.org/W2097864691","https://openalex.org/W2099082448","https://openalex.org/W2111899305","https://openalex.org/W2114518254","https://openalex.org/W2115549005","https://openalex.org/W2120988439","https://openalex.org/W2127033122","https://openalex.org/W2130497602","https://openalex.org/W2136559804","https://openalex.org/W2140405224","https://openalex.org/W2143256550","https://openalex.org/W2144821695","https://openalex.org/W2148252058","https://openalex.org/W2149242848","https://openalex.org/W2154950846","https://openalex.org/W2160135160","https://openalex.org/W2168762395","https://openalex.org/W2175665218","https://openalex.org/W2235421838","https://openalex.org/W2259429874","https://openalex.org/W2298057154","https://openalex.org/W2318584550","https://openalex.org/W2497274602","https://openalex.org/W2761845089","https://openalex.org/W2785854718","https://openalex.org/W2798693294","https://openalex.org/W2799137800","https://openalex.org/W2806766210","https://openalex.org/W2884857052","https://openalex.org/W2977168990","https://openalex.org/W3010667714","https://openalex.org/W3104531658"],"related_works":["https://openalex.org/W1579876584","https://openalex.org/W3158483886","https://openalex.org/W2284480798","https://openalex.org/W4307053970","https://openalex.org/W4390860228","https://openalex.org/W2786534237","https://openalex.org/W1993945992","https://openalex.org/W4301184755","https://openalex.org/W3197108443","https://openalex.org/W2794837240"],"abstract_inverted_index":{"Communication":[0],"between":[1],"cells":[2,161],"enables":[3],"the":[4,55,72,82,85,97,116,155,167,184,209,219],"coordination":[5],"that":[6,173,195,227],"drives":[7],"structural":[8],"and":[9,17,37,57,81,109,127,166,189,200,212],"functional":[10],"complexity":[11],"in":[12,62,132],"biological":[13,64,77],"systems.":[14],"Both":[15],"single":[16],"multicellular":[18],"organisms":[19],"have":[20,106],"evolved":[21],"diverse":[22],"communication":[23,61,104,121,153,175,216],"systems":[24,41,122],"for":[25],"a":[26],"range":[27],"of":[28,32,35,59,75,84,100,135,215],"purposes,":[29],"including":[30],"synchronization":[31],"behavior,":[33,197],"division":[34],"labor,":[36],"spatial":[38],"organization.":[39],"Synthetic":[40],"are":[42,162,203],"also":[43,193],"increasingly":[44],"being":[45],"engineered":[46],"to":[47,94,112,118,164,207],"utilize":[48],"cell-cell":[49,60,103,120,174],"communication.":[50],"While":[51],"research":[52],"has":[53,222],"elucidated":[54],"form":[56,211],"function":[58],"many":[63],"systems,":[65],"our":[66,91],"knowledge":[67],"is":[68,93],"still":[69],"limited":[70],"by":[71],"confounding":[73],"effects":[74],"other":[76],"phenomena":[78],"at":[79,159],"play":[80],"bias":[83],"evolutionary":[86],"background.":[87],"In":[88],"this":[89],"work,":[90],"goal":[92],"push":[95],"forward":[96],"context-free":[98],"understanding":[99],"what":[101],"impact":[102],"can":[105,123,176],"on":[107,150],"cellular":[108,138,196,220],"population":[110],"behavior":[111],"more":[113],"fully":[114],"understand":[115],"extent":[117],"which":[119,160],"be":[124,177],"utilized,":[125],"modified,":[126],"engineered.":[128],"We":[129,148,171,192],"use":[130],"an":[131],"silico":[133],"model":[134],"3D":[136],"multiscale":[137],"populations,":[139],"with":[140],"dynamic":[141],"intracellular":[142],"networks":[143],"interacting":[144],"via":[145],"diffusible":[146],"signals.":[147],"focus":[149],"two":[151],"key":[152],"parameters:":[154],"effective":[156],"interaction":[157],"distance":[158],"able":[163],"interact":[165],"receptor":[168],"activation":[169],"threshold.":[170],"found":[172],"divided":[178],"into":[179],"six":[180],"different":[181],"forms":[182],"along":[183],"parameter":[185],"axes,":[186],"three":[187,190],"asocial":[188],"social.":[191],"show":[194],"tissue":[198,201],"composition,":[199],"diversity":[202],"all":[204],"highly":[205],"sensitive":[206],"both":[208],"general":[210],"specific":[213],"parameters":[214],"even":[217],"when":[218],"network":[221],"not":[223],"been":[224],"biased":[225],"towards":[226],"behavior.":[228]},"counts_by_year":[],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
