{"id":"https://openalex.org/W4311957155","doi":"https://doi.org/10.3390/e24121793","title":"Foraging Dynamics and Entropy Production in a Simulated Proto-Cell","display_name":"Foraging Dynamics and Entropy Production in a Simulated Proto-Cell","publication_year":2022,"publication_date":"2022-12-08","ids":{"openalex":"https://openalex.org/W4311957155","doi":"https://doi.org/10.3390/e24121793","pmid":"https://pubmed.ncbi.nlm.nih.gov/36554198"},"language":"en","primary_location":{"id":"doi:10.3390/e24121793","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e24121793","pdf_url":"https://www.mdpi.com/1099-4300/24/12/1793/pdf?version=1670576040","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/24/12/1793/pdf?version=1670576040","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056921069","display_name":"Benjamin De Bari","orcid":"https://orcid.org/0000-0002-7894-7849"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]},{"id":"https://openalex.org/I186143895","display_name":"Lehigh University","ror":"https://ror.org/012afjb06","country_code":"US","type":"education","lineage":["https://openalex.org/I186143895"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Benjamin De Bari","raw_affiliation_strings":["Center for the Ecological Study of Perception and Action, University of Connecticut, Storrs, CT 06269, USA","Department of Psychology, Lehigh University, Bethlehem, PA 18015, USA"],"raw_orcid":"https://orcid.org/0000-0002-7894-7849","affiliations":[{"raw_affiliation_string":"Center for the Ecological Study of Perception and Action, University of Connecticut, Storrs, CT 06269, USA","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"Department of Psychology, Lehigh University, Bethlehem, PA 18015, USA","institution_ids":["https://openalex.org/I186143895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057092304","display_name":"Dilip Kondepudi","orcid":"https://orcid.org/0000-0003-2312-0745"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]},{"id":"https://openalex.org/I47251452","display_name":"Wake Forest University","ror":"https://ror.org/0207ad724","country_code":"US","type":"education","lineage":["https://openalex.org/I47251452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dilip K. Kondepudi","raw_affiliation_strings":["Center for the Ecological Study of Perception and Action, University of Connecticut, Storrs, CT 06269, USA","Department of Chemistry, Wake Forest University, Winston-Salem, NC 27109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for the Ecological Study of Perception and Action, University of Connecticut, Storrs, CT 06269, USA","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"Department of Chemistry, Wake Forest University, Winston-Salem, NC 27109, USA","institution_ids":["https://openalex.org/I47251452"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045331000","display_name":"James A. Dixon","orcid":"https://orcid.org/0000-0001-6438-8196"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James A. Dixon","raw_affiliation_strings":["Center for the Ecological Study of Perception and Action, University of Connecticut, Storrs, CT 06269, USA","Department of Psychological Sciences, University of Connecticut, Storrs, CT 06269, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for the Ecological Study of Perception and Action, University of Connecticut, Storrs, CT 06269, USA","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"Department of Psychological Sciences, University of Connecticut, Storrs, CT 06269, USA","institution_ids":["https://openalex.org/I140172145"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5056921069"],"corresponding_institution_ids":["https://openalex.org/I140172145","https://openalex.org/I186143895"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":0.1251,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.44953608,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"24","issue":"12","first_page":"1793","last_page":"1793"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11520","display_name":"Advanced Thermodynamics and Statistical Mechanics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11520","display_name":"Advanced Thermodynamics and Statistical Mechanics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12236","display_name":"Photoreceptor and optogenetics research","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/entropy-production","display_name":"Entropy production","score":0.8828814029693604},{"id":"https://openalex.org/keywords/dissipative-system","display_name":"Dissipative system","score":0.7068927884101868},{"id":"https://openalex.org/keywords/foraging","display_name":"Foraging","score":0.6855353116989136},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.6435771584510803},{"id":"https://openalex.org/keywords/entropy","display_name":"Entropy (arrow of time)","score":0.5897574424743652},{"id":"https://openalex.org/keywords/nonlinear-system","display_name":"Nonlinear system","score":0.5386165976524353},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.5076881647109985},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.430758535861969},{"id":"https://openalex.org/keywords/optimal-foraging-theory","display_name":"Optimal foraging theory","score":0.41227224469184875},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.3746888041496277},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.32617437839508057},{"id":"https://openalex.org/keywords/thermodynamics","display_name":"Thermodynamics","score":0.23188439011573792},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20850077271461487}],"concepts":[{"id":"https://openalex.org/C207282930","wikidata":"https://www.wikidata.org/wiki/Q5380811","display_name":"Entropy production","level":2,"score":0.8828814029693604},{"id":"https://openalex.org/C99692599","wikidata":"https://www.wikidata.org/wiki/Q596577","display_name":"Dissipative system","level":2,"score":0.7068927884101868},{"id":"https://openalex.org/C165287380","wikidata":"https://www.wikidata.org/wiki/Q2916569","display_name":"Foraging","level":2,"score":0.6855353116989136},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.6435771584510803},{"id":"https://openalex.org/C106301342","wikidata":"https://www.wikidata.org/wiki/Q4117933","display_name":"Entropy (arrow of time)","level":2,"score":0.5897574424743652},{"id":"https://openalex.org/C158622935","wikidata":"https://www.wikidata.org/wiki/Q660848","display_name":"Nonlinear system","level":2,"score":0.5386165976524353},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.5076881647109985},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.430758535861969},{"id":"https://openalex.org/C95812059","wikidata":"https://www.wikidata.org/wiki/Q277031","display_name":"Optimal foraging theory","level":3,"score":0.41227224469184875},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.3746888041496277},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.32617437839508057},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.23188439011573792},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20850077271461487},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3390/e24121793","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e24121793","pdf_url":"https://www.mdpi.com/1099-4300/24/12/1793/pdf?version=1670576040","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmid:36554198","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36554198","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy (Basel, Switzerland)","raw_type":null},{"id":"pmh:oai:doaj.org/article:308d7404c9454e54a2275ee9f0bbceef","is_oa":true,"landing_page_url":"https://doaj.org/article/308d7404c9454e54a2275ee9f0bbceef","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 24, Iss 12, p 1793 (2022)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/1099-4300/24/12/1793/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/e24121793","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy; Volume 24; Issue 12; Pages: 1793","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:9778031","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9778031","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy (Basel)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/e24121793","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e24121793","pdf_url":"https://www.mdpi.com/1099-4300/24/12/1793/pdf?version=1670576040","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4311957155.pdf","grobid_xml":"https://content.openalex.org/works/W4311957155.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W950991549","https://openalex.org/W1485866620","https://openalex.org/W1521967082","https://openalex.org/W1963942260","https://openalex.org/W1964069773","https://openalex.org/W1971512056","https://openalex.org/W1972963245","https://openalex.org/W1984289587","https://openalex.org/W1986911067","https://openalex.org/W1990949491","https://openalex.org/W2000560592","https://openalex.org/W2022361830","https://openalex.org/W2039922706","https://openalex.org/W2050644489","https://openalex.org/W2051475343","https://openalex.org/W2053558584","https://openalex.org/W2062853424","https://openalex.org/W2069714182","https://openalex.org/W2081688728","https://openalex.org/W2086400909","https://openalex.org/W2092589298","https://openalex.org/W2095459380","https://openalex.org/W2100217006","https://openalex.org/W2114524417","https://openalex.org/W2119439884","https://openalex.org/W2119893119","https://openalex.org/W2137791125","https://openalex.org/W2138192576","https://openalex.org/W2149139333","https://openalex.org/W2153915469","https://openalex.org/W2156739306","https://openalex.org/W2157035698","https://openalex.org/W2170214771","https://openalex.org/W2313735092","https://openalex.org/W2329202886","https://openalex.org/W2335051187","https://openalex.org/W2441071767","https://openalex.org/W2501579480","https://openalex.org/W2514943096","https://openalex.org/W2547978801","https://openalex.org/W2736552195","https://openalex.org/W2754565730","https://openalex.org/W2768929684","https://openalex.org/W2769233895","https://openalex.org/W2776751315","https://openalex.org/W2808577370","https://openalex.org/W2947072205","https://openalex.org/W2952209168","https://openalex.org/W2962782145","https://openalex.org/W2966575122","https://openalex.org/W3003257820","https://openalex.org/W3020898993","https://openalex.org/W3088748386","https://openalex.org/W3103145119","https://openalex.org/W3214341783","https://openalex.org/W4224041597","https://openalex.org/W4248008395","https://openalex.org/W4254369546"],"related_works":["https://openalex.org/W1983444316","https://openalex.org/W2315789094","https://openalex.org/W2093276668","https://openalex.org/W2973804033","https://openalex.org/W4248406013","https://openalex.org/W2503827760","https://openalex.org/W88326050","https://openalex.org/W3010307207","https://openalex.org/W2000503930","https://openalex.org/W2161590143"],"abstract_inverted_index":{"All":[0],"organisms":[1,39],"depend":[2],"on":[3,51],"a":[4,26,52,60,68,75,89,101,130,162],"supply":[5],"of":[6,28,35,88,100,113,125,146,156,161,171],"energetic":[7],"resources":[8,72],"to":[9,80,122,177],"power":[10],"behavior":[11],"and":[12,95,97,119,136,148,157,174],"the":[13,33,81,104,114,123,143,169],"irreversible":[14],"entropy-producing":[15],"processes":[16],"that":[17,57,73,139],"sustain":[18],"them.":[19],"Dissipative":[20],"structure":[21,56],"theory":[22],"has":[23],"often":[24],"been":[25],"source":[27],"inspiration":[29],"for":[30],"better":[31],"understanding":[32],"thermodynamics":[34],"biology,":[36],"yet":[37],"real":[38],"are":[40],"inordinately":[41],"more":[42],"complex":[43],"than":[44],"most":[45],"laboratory":[46],"systems.":[47],"Here":[48],"we":[49],"report":[50],"simulated":[53,64],"chemical":[54],"dissipative":[55],"operates":[58],"as":[59],"proto":[61],"cell.":[62],"The":[63,83],"swimmer":[65],"moves":[66],"through":[67],"1D":[69],"environment":[70],"collecting":[71],"drive":[74],"nonlinear":[76,105],"reaction":[77,106],"network":[78],"interior":[79],"swimmer.":[82],"model":[84],"minimally":[85],"represents":[86],"properties":[87],"simple":[90],"organism":[91],"including":[92],"rudimentary":[93],"foraging":[94,115,147],"chemotaxis":[96],"an":[98],"analog":[99],"metabolism":[102],"in":[103,154],"network.":[107],"We":[108,167],"evaluated":[109],"how":[110],"dynamical":[111,133],"stability":[112],"dynamics":[116],"(i.e.,":[117],"swimming":[118],"chemotaxis)":[120],"relates":[121],"rate":[124],"entropy":[126,137,164],"production.":[127],"Results":[128,151],"suggested":[129],"relationship":[131],"between":[132],"steady":[134],"states":[135],"production":[138,165],"was":[140],"tuned":[141],"by":[142],"relative":[144],"coordination":[145],"metabolic":[149],"processes.":[150],"include":[152],"evidence":[153],"support":[155],"contradicting":[158],"one":[159],"formulation":[160],"maximum":[163],"principle.":[166],"discuss":[168],"status":[170],"this":[172],"principle":[173],"its":[175],"relevance":[176],"biology.":[178]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-21T09:19:25.381259","created_date":"2025-10-10T00:00:00"}
