{"id":"https://openalex.org/W4206722399","doi":"https://doi.org/10.3390/e24020141","title":"Prediction of Time Series Gene Expression and Structural Analysis of Gene Regulatory Networks Using Recurrent Neural Networks","display_name":"Prediction of Time Series Gene Expression and Structural Analysis of Gene Regulatory Networks Using Recurrent Neural Networks","publication_year":2022,"publication_date":"2022-01-18","ids":{"openalex":"https://openalex.org/W4206722399","doi":"https://doi.org/10.3390/e24020141","pmid":"https://pubmed.ncbi.nlm.nih.gov/35205437"},"language":"en","primary_location":{"id":"doi:10.3390/e24020141","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e24020141","pdf_url":"https://www.mdpi.com/1099-4300/24/2/141/pdf?version=1642509147","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/24/2/141/pdf?version=1642509147","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005886255","display_name":"Michele Monti","orcid":"https://orcid.org/0000-0002-7703-1134"},"institutions":[{"id":"https://openalex.org/I30771326","display_name":"Italian Institute of Technology","ror":"https://ror.org/042t93s57","country_code":"IT","type":"facility","lineage":["https://openalex.org/I30771326"]},{"id":"https://openalex.org/I4210132884","display_name":"Barcelona Institute of Science and Technology","ror":"https://ror.org/03kpps236","country_code":"ES","type":"education","lineage":["https://openalex.org/I4210132884"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES","IT"],"is_corresponding":true,"raw_author_name":"Michele Monti","raw_affiliation_strings":["Centre for Genomic Regulation (CRG), The Barcelona Institute for Science and Technology, Dr. Aiguader 88, 08003 Barcelona, Spain","RNA System Biology Lab, Department of Neuroscience and Brain Technologies, Istituto Italiano di Tecnologia, Via Morego 30, 16163 Genoa, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Genomic Regulation (CRG), The Barcelona Institute for Science and Technology, Dr. Aiguader 88, 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210132884","https://openalex.org/I4210137962"]},{"raw_affiliation_string":"RNA System Biology Lab, Department of Neuroscience and Brain Technologies, Istituto Italiano di Tecnologia, Via Morego 30, 16163 Genoa, Italy","institution_ids":["https://openalex.org/I30771326"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047553056","display_name":"Jonathan Fiorentino","orcid":"https://orcid.org/0000-0003-2096-3210"},"institutions":[{"id":"https://openalex.org/I30771326","display_name":"Italian Institute of Technology","ror":"https://ror.org/042t93s57","country_code":"IT","type":"facility","lineage":["https://openalex.org/I30771326"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Jonathan Fiorentino","raw_affiliation_strings":["Center for Life Nano- & Neuro-Science, Istituto Italiano di Tecnologia, Viale Regina Elena 291, 00161 Rome, Italy"],"raw_orcid":"https://orcid.org/0000-0003-2096-3210","affiliations":[{"raw_affiliation_string":"Center for Life Nano- & Neuro-Science, Istituto Italiano di Tecnologia, Viale Regina Elena 291, 00161 Rome, Italy","institution_ids":["https://openalex.org/I30771326"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015294553","display_name":"Edoardo Milanetti","orcid":"https://orcid.org/0000-0002-3046-5170"},"institutions":[{"id":"https://openalex.org/I30771326","display_name":"Italian Institute of Technology","ror":"https://ror.org/042t93s57","country_code":"IT","type":"facility","lineage":["https://openalex.org/I30771326"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Edoardo Milanetti","raw_affiliation_strings":["Center for Life Nano- & Neuro-Science, Istituto Italiano di Tecnologia, Viale Regina Elena 291, 00161 Rome, Italy","Department of Physics, Sapienza University of Rome, 00185 Rome, Italy"],"raw_orcid":"https://orcid.org/0000-0002-3046-5170","affiliations":[{"raw_affiliation_string":"Center for Life Nano- & Neuro-Science, Istituto Italiano di Tecnologia, Viale Regina Elena 291, 00161 Rome, Italy","institution_ids":["https://openalex.org/I30771326"]},{"raw_affiliation_string":"Department of Physics, Sapienza University of Rome, 00185 Rome, Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068242139","display_name":"Giorgio Gosti","orcid":"https://orcid.org/0000-0002-8571-1404"},"institutions":[{"id":"https://openalex.org/I30771326","display_name":"Italian Institute of Technology","ror":"https://ror.org/042t93s57","country_code":"IT","type":"facility","lineage":["https://openalex.org/I30771326"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giorgio Gosti","raw_affiliation_strings":["Center for Life Nano- & Neuro-Science, Istituto Italiano di Tecnologia, Viale Regina Elena 291, 00161 Rome, Italy","Department of Physics, Sapienza University of Rome, 00185 Rome, Italy"],"raw_orcid":"https://orcid.org/0000-0002-8571-1404","affiliations":[{"raw_affiliation_string":"Center for Life Nano- & Neuro-Science, Istituto Italiano di Tecnologia, Viale Regina Elena 291, 00161 Rome, Italy","institution_ids":["https://openalex.org/I30771326"]},{"raw_affiliation_string":"Department of Physics, Sapienza University of Rome, 00185 Rome, Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052209378","display_name":"Gian Gaetano Tartaglia","orcid":"https://orcid.org/0000-0001-7524-6310"},"institutions":[{"id":"https://openalex.org/I30771326","display_name":"Italian Institute of Technology","ror":"https://ror.org/042t93s57","country_code":"IT","type":"facility","lineage":["https://openalex.org/I30771326"]},{"id":"https://openalex.org/I4210132884","display_name":"Barcelona Institute of Science and Technology","ror":"https://ror.org/03kpps236","country_code":"ES","type":"education","lineage":["https://openalex.org/I4210132884"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["ES","IT"],"is_corresponding":true,"raw_author_name":"Gian Gaetano Tartaglia","raw_affiliation_strings":["Center for Life Nano- & Neuro-Science, Istituto Italiano di Tecnologia, Viale Regina Elena 291, 00161 Rome, Italy","Centre for Genomic Regulation (CRG), The Barcelona Institute for Science and Technology, Dr. Aiguader 88, 08003 Barcelona, Spain","Department of Biology and Biotechnology Charles Darwin, Sapienza University of Rome, 00185 Rome, Italy","RNA System Biology Lab, Department of Neuroscience and Brain Technologies, Istituto Italiano di Tecnologia, Via Morego 30, 16163 Genoa, Italy"],"raw_orcid":"https://orcid.org/0000-0001-7524-6310","affiliations":[{"raw_affiliation_string":"Center for Life Nano- & Neuro-Science, Istituto Italiano di Tecnologia, Viale Regina Elena 291, 00161 Rome, Italy","institution_ids":["https://openalex.org/I30771326"]},{"raw_affiliation_string":"Centre for Genomic Regulation (CRG), The Barcelona Institute for Science and Technology, Dr. Aiguader 88, 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210132884","https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Department of Biology and Biotechnology Charles Darwin, Sapienza University of Rome, 00185 Rome, Italy","institution_ids":["https://openalex.org/I861853513"]},{"raw_affiliation_string":"RNA System Biology Lab, Department of Neuroscience and Brain Technologies, Istituto Italiano di Tecnologia, Via Morego 30, 16163 Genoa, Italy","institution_ids":["https://openalex.org/I30771326"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5005886255","https://openalex.org/A5052209378"],"corresponding_institution_ids":["https://openalex.org/I30771326","https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I861853513"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2227},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2227},"fwci":2.819,"has_fulltext":true,"cited_by_count":45,"citation_normalized_percentile":{"value":0.91970156,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"24","issue":"2","first_page":"141","last_page":"141"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9825000166893005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.9497700333595276},{"id":"https://openalex.org/keywords/recurrent-neural-network","display_name":"Recurrent neural network","score":0.8024801015853882},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7109335660934448},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6385676860809326},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6294074058532715},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5887416005134583},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5059720873832703},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.48791763186454773},{"id":"https://openalex.org/keywords/time-series","display_name":"Time series","score":0.44361501932144165},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.3195475935935974},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2953674793243408},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.24279305338859558},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.13549450039863586},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12940850853919983},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08137333393096924}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.9497700333595276},{"id":"https://openalex.org/C147168706","wikidata":"https://www.wikidata.org/wiki/Q1457734","display_name":"Recurrent neural network","level":3,"score":0.8024801015853882},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7109335660934448},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6385676860809326},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6294074058532715},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5887416005134583},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5059720873832703},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.48791763186454773},{"id":"https://openalex.org/C151406439","wikidata":"https://www.wikidata.org/wiki/Q186588","display_name":"Time series","level":2,"score":0.44361501932144165},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.3195475935935974},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2953674793243408},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.24279305338859558},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.13549450039863586},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12940850853919983},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08137333393096924}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.3390/e24020141","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e24020141","pdf_url":"https://www.mdpi.com/1099-4300/24/2/141/pdf?version=1642509147","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmid:35205437","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35205437","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy (Basel, Switzerland)","raw_type":null},{"id":"pmh:oai:repositori-api.upf.edu:10230/52831","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/52831","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8871363","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8871363","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy (Basel)","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:08f3c69693354919b4e45ea9b97b62b0","is_oa":true,"landing_page_url":"https://doaj.org/article/08f3c69693354919b4e45ea9b97b62b0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 24, Iss 2, p 141 (2022)","raw_type":"article"},{"id":"pmh:oai:iris.uniroma1.it:11573/1625405","is_oa":true,"landing_page_url":"http://hdl.handle.net/11573/1625405","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:mdpi.com:/1099-4300/24/2/141/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/e24020141","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy; Volume 24; Issue 2; Pages: 141","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/e24020141","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e24020141","pdf_url":"https://www.mdpi.com/1099-4300/24/2/141/pdf?version=1642509147","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4206722399.pdf","grobid_xml":"https://content.openalex.org/works/W4206722399.grobid-xml"},"referenced_works_count":72,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1428953978","https://openalex.org/W1753383671","https://openalex.org/W1981509058","https://openalex.org/W1981685486","https://openalex.org/W2009405916","https://openalex.org/W2018670096","https://openalex.org/W2020945403","https://openalex.org/W2025828346","https://openalex.org/W2026430219","https://openalex.org/W2044082313","https://openalex.org/W2057903322","https://openalex.org/W2062029454","https://openalex.org/W2062404235","https://openalex.org/W2062533676","https://openalex.org/W2068163594","https://openalex.org/W2088988616","https://openalex.org/W2091136244","https://openalex.org/W2109110326","https://openalex.org/W2109384743","https://openalex.org/W2110699703","https://openalex.org/W2112326910","https://openalex.org/W2114792046","https://openalex.org/W2150236135","https://openalex.org/W2153624566","https://openalex.org/W2157305458","https://openalex.org/W2171948041","https://openalex.org/W2416402039","https://openalex.org/W2473693530","https://openalex.org/W2509957998","https://openalex.org/W2563625368","https://openalex.org/W2613328025","https://openalex.org/W2624196045","https://openalex.org/W2625783081","https://openalex.org/W2726262487","https://openalex.org/W2738322798","https://openalex.org/W2764226152","https://openalex.org/W2765722330","https://openalex.org/W2783975438","https://openalex.org/W2801147603","https://openalex.org/W2809684781","https://openalex.org/W2893184150","https://openalex.org/W2900099657","https://openalex.org/W2913354234","https://openalex.org/W2920970571","https://openalex.org/W2949391649","https://openalex.org/W2949913358","https://openalex.org/W2951799803","https://openalex.org/W2964010366","https://openalex.org/W2964265541","https://openalex.org/W2964325296","https://openalex.org/W2974274234","https://openalex.org/W2980101920","https://openalex.org/W2989312985","https://openalex.org/W2997831639","https://openalex.org/W3003421376","https://openalex.org/W3012079496","https://openalex.org/W3017097660","https://openalex.org/W3024161231","https://openalex.org/W3038369633","https://openalex.org/W3086251959","https://openalex.org/W3101369110","https://openalex.org/W3102325391","https://openalex.org/W3108101741","https://openalex.org/W3126014626","https://openalex.org/W3139303516","https://openalex.org/W3152977626","https://openalex.org/W3162078601","https://openalex.org/W3186348651","https://openalex.org/W3193795275","https://openalex.org/W3194031879","https://openalex.org/W6774941219"],"related_works":["https://openalex.org/W2905433371","https://openalex.org/W4390569940","https://openalex.org/W2888392564","https://openalex.org/W4361193272","https://openalex.org/W2768320620","https://openalex.org/W2560421304","https://openalex.org/W2950199998","https://openalex.org/W2951387065","https://openalex.org/W2134575910","https://openalex.org/W4385727351"],"abstract_inverted_index":{"Methods":[0],"for":[1,41,86,178],"time":[2,53,179],"series":[3,54,180],"prediction":[4,82,137,181],"and":[5,64,141,163,170,182],"classification":[6],"of":[7,25,35,44,61,98,120,133,150,168,184],"gene":[8,13,45,55,75,187],"regulatory":[9],"networks":[10],"(GRNs)":[11],"from":[12,58,104,186],"expression":[14,56,188],"data":[15,57],"have":[16],"been":[17],"treated":[18],"separately":[19],"so":[20],"far.":[21],"The":[22],"recent":[23],"emergence":[24],"attention-based":[26],"recurrent":[27],"neural":[28],"network":[29],"(RNN)":[30],"models":[31],"boosted":[32],"the":[33,42,74,81,95,99,121,126,131,136,139,144,148,151,165,173],"interpretability":[34],"RNN":[36,71,100,140],"parameters,":[37],"making":[38],"them":[39],"appealing":[40],"understanding":[43],"interactions.":[46],"In":[47,154],"this":[48,156],"work,":[49],"we":[50,65,92,107,142],"generated":[51],"synthetic":[52],"a":[59,68,159],"range":[60],"archetypal":[62],"GRNs":[63,87,185],"relied":[66],"on":[67,94],"dual":[69],"attention":[70,96,152,166],"to":[72,115,130,147,161,175],"predict":[73],"temporal":[76],"dynamics.":[77],"We":[78,123],"show":[79,124],"that":[80,109,125],"is":[83],"extremely":[84],"accurate":[85],"with":[88],"different":[89,118],"architectures.":[90],"Next,":[91],"focused":[93],"mechanism":[97,167],"and,":[101],"using":[102],"tools":[103],"graph":[105,111],"theory,":[106],"found":[108],"its":[110],"properties":[112],"allow":[113],"one":[114],"hierarchically":[116],"distinguish":[117],"architectures":[119],"GRN.":[122],"GRN":[127],"responded":[128],"differently":[129],"addition":[132],"noise":[134,145],"in":[135],"by":[138],"related":[143],"response":[146],"analysis":[149],"mechanism.":[153],"conclusion,":[155],"work":[157],"provides":[158],"way":[160,174],"understand":[162],"exploit":[164],"RNNs":[169],"it":[171],"paves":[172],"RNN-based":[176],"methods":[177],"inference":[183],"data.":[189]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
