{"id":"https://openalex.org/W3162970413","doi":"https://doi.org/10.3390/e23050609","title":"Cancer Niches and Their Kikuchi Free Energy","display_name":"Cancer Niches and Their Kikuchi Free Energy","publication_year":2021,"publication_date":"2021-05-14","ids":{"openalex":"https://openalex.org/W3162970413","doi":"https://doi.org/10.3390/e23050609","mag":"3162970413","pmid":"https://pubmed.ncbi.nlm.nih.gov/34069097"},"language":"en","primary_location":{"id":"doi:10.3390/e23050609","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e23050609","pdf_url":"https://www.mdpi.com/1099-4300/23/5/609/pdf?version=1621563733","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/23/5/609/pdf?version=1621563733","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071633664","display_name":"Noor Sajid","orcid":"https://orcid.org/0000-0003-1904-2887"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]},{"id":"https://openalex.org/I165524941","display_name":"Wellcome Centre for Human Neuroimaging","ror":"https://ror.org/02704qw51","country_code":"GB","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I165524941","https://openalex.org/I45129253","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Noor Sajid","raw_affiliation_strings":["Wellcome Centre for Human Neuroimaging, Institute of Neurology, University College London, London WC1N 3BG, UK"],"affiliations":[{"raw_affiliation_string":"Wellcome Centre for Human Neuroimaging, Institute of Neurology, University College London, London WC1N 3BG, UK","institution_ids":["https://openalex.org/I165524941","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005645115","display_name":"Laura Convertino","orcid":"https://orcid.org/0000-0001-9454-6829"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]},{"id":"https://openalex.org/I165524941","display_name":"Wellcome Centre for Human Neuroimaging","ror":"https://ror.org/02704qw51","country_code":"GB","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I165524941","https://openalex.org/I45129253","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Laura Convertino","raw_affiliation_strings":["Institute of Cognitive Neuroscience, University College London, London WC1N 3BG, UK","Wellcome Centre for Human Neuroimaging, Institute of Neurology, University College London, London WC1N 3BG, UK"],"affiliations":[{"raw_affiliation_string":"Institute of Cognitive Neuroscience, University College London, London WC1N 3BG, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Wellcome Centre for Human Neuroimaging, Institute of Neurology, University College London, London WC1N 3BG, UK","institution_ids":["https://openalex.org/I165524941","https://openalex.org/I45129253"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086852785","display_name":"Karl Friston","orcid":"https://orcid.org/0000-0001-7984-8909"},"institutions":[{"id":"https://openalex.org/I165524941","display_name":"Wellcome Centre for Human Neuroimaging","ror":"https://ror.org/02704qw51","country_code":"GB","type":"facility","lineage":["https://openalex.org/I124357947","https://openalex.org/I165524941","https://openalex.org/I45129253","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Karl Friston","raw_affiliation_strings":["Wellcome Centre for Human Neuroimaging, Institute of Neurology, University College London, London WC1N 3BG, UK"],"affiliations":[{"raw_affiliation_string":"Wellcome Centre for Human Neuroimaging, Institute of Neurology, University College London, London WC1N 3BG, UK","institution_ids":["https://openalex.org/I165524941","https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5005645115","https://openalex.org/A5071633664"],"corresponding_institution_ids":["https://openalex.org/I165524941","https://openalex.org/I45129253"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":0.8161,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.7052583,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"23","issue":"5","first_page":"609","last_page":"609"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11829","display_name":"Mathematical Biology Tumor Growth","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11829","display_name":"Mathematical Biology Tumor Growth","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9692999720573425,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9132000207901001,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/niche","display_name":"Niche","score":0.7113472819328308},{"id":"https://openalex.org/keywords/ecological-niche","display_name":"Ecological niche","score":0.6538144946098328},{"id":"https://openalex.org/keywords/cancer-cell","display_name":"Cancer cell","score":0.6377596855163574},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.6227510571479797},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5200121402740479},{"id":"https://openalex.org/keywords/cancer-metastasis","display_name":"Cancer metastasis","score":0.44701823592185974},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.4406234622001648},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35565316677093506},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.22691026329994202},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.22550088167190552},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1464328169822693}],"concepts":[{"id":"https://openalex.org/C153991713","wikidata":"https://www.wikidata.org/wiki/Q17142856","display_name":"Niche","level":2,"score":0.7113472819328308},{"id":"https://openalex.org/C102715595","wikidata":"https://www.wikidata.org/wiki/Q172861","display_name":"Ecological niche","level":3,"score":0.6538144946098328},{"id":"https://openalex.org/C96232424","wikidata":"https://www.wikidata.org/wiki/Q4118072","display_name":"Cancer cell","level":3,"score":0.6377596855163574},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.6227510571479797},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5200121402740479},{"id":"https://openalex.org/C2992691968","wikidata":"https://www.wikidata.org/wiki/Q181876","display_name":"Cancer metastasis","level":4,"score":0.44701823592185974},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.4406234622001648},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35565316677093506},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.22691026329994202},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.22550088167190552},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1464328169822693},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C185933670","wikidata":"https://www.wikidata.org/wiki/Q52105","display_name":"Habitat","level":2,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.3390/e23050609","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e23050609","pdf_url":"https://www.mdpi.com/1099-4300/23/5/609/pdf?version=1621563733","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmid:34069097","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34069097","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy (Basel, Switzerland)","raw_type":null},{"id":"pmh:oai:doaj.org/article:eb7e2243032e45ce8f31fd69b8f8674f","is_oa":true,"landing_page_url":"https://doaj.org/article/eb7e2243032e45ce8f31fd69b8f8674f","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 23, Iss 5, p 609 (2021)","raw_type":"article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:10128529","is_oa":false,"landing_page_url":"https://discovery.ucl.ac.uk/id/eprint/10128529/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   Entropy , 23  (5)   p. 609.   (2021)      ","raw_type":"Article"},{"id":"pmh:oai:mdpi.com:/1099-4300/23/5/609/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/e23050609","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy; Volume 23; Issue 5; Pages: 609","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8156740","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8156740","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy (Basel)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/e23050609","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e23050609","pdf_url":"https://www.mdpi.com/1099-4300/23/5/609/pdf?version=1621563733","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8199999928474426,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[{"id":"https://openalex.org/G4452351925","display_name":null,"funder_award_id":"2088828","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G7982400489","display_name":null,"funder_award_id":"205103/Z/16/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3162970413.pdf","grobid_xml":"https://content.openalex.org/works/W3162970413.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W41858242","https://openalex.org/W46860574","https://openalex.org/W53464817","https://openalex.org/W1418557530","https://openalex.org/W1493434279","https://openalex.org/W1516111018","https://openalex.org/W1588772321","https://openalex.org/W1594874645","https://openalex.org/W1861988602","https://openalex.org/W1917704994","https://openalex.org/W1927644290","https://openalex.org/W1980881263","https://openalex.org/W1999330214","https://openalex.org/W2000073032","https://openalex.org/W2007995670","https://openalex.org/W2008757142","https://openalex.org/W2019599312","https://openalex.org/W2032558204","https://openalex.org/W2034269086","https://openalex.org/W2045514650","https://openalex.org/W2071123870","https://openalex.org/W2099111195","https://openalex.org/W2102409316","https://openalex.org/W2116504531","https://openalex.org/W2117636863","https://openalex.org/W2120294885","https://openalex.org/W2122458046","https://openalex.org/W2130195834","https://openalex.org/W2136293580","https://openalex.org/W2142247294","https://openalex.org/W2160754686","https://openalex.org/W2169415915","https://openalex.org/W2340191453","https://openalex.org/W2467016830","https://openalex.org/W2518800285","https://openalex.org/W2526691099","https://openalex.org/W2552810632","https://openalex.org/W2588231937","https://openalex.org/W2617267523","https://openalex.org/W2705788832","https://openalex.org/W2800462673","https://openalex.org/W2889530976","https://openalex.org/W2918957485","https://openalex.org/W2937137325","https://openalex.org/W2951666363","https://openalex.org/W2959065967","https://openalex.org/W2988114478","https://openalex.org/W2992017056","https://openalex.org/W3003262276","https://openalex.org/W3024223917","https://openalex.org/W3099476569","https://openalex.org/W3100508066","https://openalex.org/W3121436404","https://openalex.org/W3123418742","https://openalex.org/W3133600349","https://openalex.org/W4210961478","https://openalex.org/W4237840503","https://openalex.org/W6638968502","https://openalex.org/W6655383422","https://openalex.org/W6675401909","https://openalex.org/W6677919857"],"related_works":["https://openalex.org/W3102059334","https://openalex.org/W3045983630","https://openalex.org/W2774948409","https://openalex.org/W2981567463","https://openalex.org/W2777552974","https://openalex.org/W4388745874","https://openalex.org/W3114103876","https://openalex.org/W1985545421","https://openalex.org/W2095253586","https://openalex.org/W3183539837"],"abstract_inverted_index":{"Biological":[0],"forms":[1],"depend":[2],"on":[3],"a":[4,35,71,147,180],"progressive":[5],"specialization":[6,44],"of":[7,13,55,74,78,91,110,115,117,120,127,133,153,168,183,186],"pluripotent":[8],"stem":[9],"cells.":[10,82],"The":[11],"differentiation":[12],"these":[14,86,139],"cells":[15,95,121],"in":[16,108,141,150],"their":[17,48,60],"spatial":[18],"and":[19,37,43,58,80,93,173,175],"functional":[20],"environment":[21],"defines":[22],"the":[23,31,53,100,113,125,151,154,184],"organism":[24],"itself;":[25],"however,":[26],"cellular":[27],"mutations":[28],"may":[29],"disrupt":[30],"mutual":[32],"balance":[33],"between":[34,76,89],"cell":[36,41],"its":[38,177],"niche,":[39],"where":[40],"proliferation":[42],"are":[45],"released":[46],"from":[47],"autopoietic":[49],"homeostasis.":[50],"This":[51],"induces":[52],"construction":[54,69],"cancer":[56,67,79,92,158,171],"niches":[57,90],"maintains":[59],"survival.":[61,160],"In":[62],"this":[63,163],"paper,":[64],"we":[65,84],"characterise":[66],"niche":[68,159],"as":[70],"direct":[72],"consequence":[73],"interactions":[75,88,132],"clusters":[77,119,144],"healthy":[81,94],"Explicitly,":[83],"evaluate":[85],"higher-order":[87],"using":[96],"Kikuchi":[97],"approximations":[98],"to":[99,112,146,157],"free":[101,104],"energy.":[102],"Kikuchi's":[103],"energy":[105,142],"is":[106],"measured":[107],"terms":[109],"changes":[111,140],"sum":[114],"energies":[116,126],"baseline":[118],"(or":[122],"nodes)":[123],"minus":[124],"overcounted":[128],"cluster":[129],"intersections":[130],"(and":[131],"interactions,":[134],"etc.).":[135],"We":[136,161],"posit":[137],"that":[138],"node":[143],"correspond":[145],"long-term":[148],"reduction":[149],"complexity":[152],"system":[155],"conducive":[156],"validate":[162],"formulation":[164],"through":[165],"numerical":[166],"simulations":[167],"apoptosis,":[169],"local":[170],"growth,":[172],"metastasis,":[174],"highlight":[176],"implications":[178],"for":[179],"computational":[181],"understanding":[182],"etiopathology":[185],"cancer.":[187]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
