{"id":"https://openalex.org/W3099682263","doi":"https://doi.org/10.3390/e22111295","title":"Enumerating Tree-Like Graphs and Polymer Topologies with a Given Cycle Rank","display_name":"Enumerating Tree-Like Graphs and Polymer Topologies with a Given Cycle Rank","publication_year":2020,"publication_date":"2020-11-13","ids":{"openalex":"https://openalex.org/W3099682263","doi":"https://doi.org/10.3390/e22111295","mag":"3099682263","pmid":"https://pubmed.ncbi.nlm.nih.gov/33287063"},"language":"en","primary_location":{"id":"doi:10.3390/e22111295","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e22111295","pdf_url":"https://www.mdpi.com/1099-4300/22/11/1295/pdf?version=1605281233","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/22/11/1295/pdf?version=1605281233","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069120004","display_name":"Naveed Ahmed Azam","orcid":"https://orcid.org/0000-0002-7941-3419"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Naveed Ahmed Azam","raw_affiliation_strings":["Department of Applied Mathematics and Physics, Kyoto University, Kyoto 606-850, Japan"],"raw_orcid":"https://orcid.org/0000-0002-7941-3419","affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics and Physics, Kyoto University, Kyoto 606-850, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084691948","display_name":"Aleksandar Shurbevski","orcid":"https://orcid.org/0000-0001-9224-6929"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Aleksandar Shurbevski","raw_affiliation_strings":["Department of Applied Mathematics and Physics, Kyoto University, Kyoto 606-850, Japan"],"raw_orcid":"https://orcid.org/0000-0001-9224-6929","affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics and Physics, Kyoto University, Kyoto 606-850, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073738140","display_name":"Hiroshi Nagamochi","orcid":"https://orcid.org/0000-0002-8332-1517"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hiroshi Nagamochi","raw_affiliation_strings":["Department of Applied Mathematics and Physics, Kyoto University, Kyoto 606-850, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics and Physics, Kyoto University, Kyoto 606-850, Japan","institution_ids":["https://openalex.org/I22299242"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5069120004"],"corresponding_institution_ids":["https://openalex.org/I22299242"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2227},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2227},"fwci":0.2529,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.62651249,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"22","issue":"11","first_page":"1295","last_page":"1295"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13297","display_name":"History and advancements in chemistry","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9692999720573425,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.6642342805862427},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.6063609719276428},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.5746712684631348},{"id":"https://openalex.org/keywords/indifference-graph","display_name":"Indifference graph","score":0.5339416861534119},{"id":"https://openalex.org/keywords/chordal-graph","display_name":"Chordal graph","score":0.5256249308586121},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.48070889711380005},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.44730326533317566},{"id":"https://openalex.org/keywords/network-topology","display_name":"Network topology","score":0.4228472113609314},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.3512939214706421},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.270598828792572}],"concepts":[{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.6642342805862427},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.6063609719276428},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.5746712684631348},{"id":"https://openalex.org/C74133993","wikidata":"https://www.wikidata.org/wiki/Q3115472","display_name":"Indifference graph","level":3,"score":0.5339416861534119},{"id":"https://openalex.org/C160446614","wikidata":"https://www.wikidata.org/wiki/Q1322892","display_name":"Chordal graph","level":3,"score":0.5256249308586121},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.48070889711380005},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.44730326533317566},{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.4228472113609314},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.3512939214706421},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.270598828792572},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3390/e22111295","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e22111295","pdf_url":"https://www.mdpi.com/1099-4300/22/11/1295/pdf?version=1605281233","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmid:33287063","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33287063","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy (Basel, Switzerland)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7711681","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7711681","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy (Basel)","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:c8a98f2a2f1c46f9ae7255aa2ad4c692","is_oa":true,"landing_page_url":"https://doaj.org/article/c8a98f2a2f1c46f9ae7255aa2ad4c692","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 22, Iss 11, p 1295 (2020)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/1099-4300/22/11/1295/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/e22111295","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy; Volume 22; Issue 11; Pages: 1295","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/e22111295","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e22111295","pdf_url":"https://www.mdpi.com/1099-4300/22/11/1295/pdf?version=1605281233","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4437838937","display_name":"Discrete Mathematics and its Applications","funder_award_id":"18J23484","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G5626364646","display_name":"Theory design and implementation of practical optimization and enumeration algorithms over graph structure","funder_award_id":"20K11691","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3099682263.pdf"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1972094496","https://openalex.org/W2032179189","https://openalex.org/W2065879466","https://openalex.org/W2132437698","https://openalex.org/W2133756602","https://openalex.org/W2149076513","https://openalex.org/W2150756751","https://openalex.org/W2153693853","https://openalex.org/W2160000945","https://openalex.org/W2522872675","https://openalex.org/W2786722833","https://openalex.org/W2947950688","https://openalex.org/W2992072991","https://openalex.org/W2997872167","https://openalex.org/W2998571806","https://openalex.org/W3023125360","https://openalex.org/W3024970380","https://openalex.org/W3081504174","https://openalex.org/W3081670308","https://openalex.org/W3082378232","https://openalex.org/W3145128584","https://openalex.org/W3192862300","https://openalex.org/W6643380523","https://openalex.org/W6682177750"],"related_works":["https://openalex.org/W2157783000","https://openalex.org/W4287117052","https://openalex.org/W3176308333","https://openalex.org/W4206705200","https://openalex.org/W2966902162","https://openalex.org/W1893557706","https://openalex.org/W4214565117","https://openalex.org/W2407722793","https://openalex.org/W2028363955","https://openalex.org/W3096244116"],"abstract_inverted_index":{"Cycle":[0],"rank":[1,32,129,156],"is":[2,7,61,89,133,138],"an":[3,44,92,141],"important":[4,84],"notion":[5],"that":[6,90,135],"widely":[8],"used":[9],"to":[10,22,46,62,122],"classify,":[11],"understand,":[12],"and":[13,35,70,108,159],"discover":[14],"new":[15],"chemical":[16],"compounds.":[17],"We":[18,118],"propose":[19],"a":[20,29,64,126,153],"method":[21,60,88,137],"enumerate":[23,47,71,123],"all":[24,48,72,97],"non-isomorphic":[25,49,73],"tree-like":[26,149],"graphs":[27,51,69,74,99,124],"of":[28,58,67,80,86,143,152],"given":[30,127,154],"cycle":[31,128,155],"with":[33,52,100,125,157],"self-loops":[34,158],"no":[36,160],"multiple":[37,161],"edges.":[38,162],"To":[39],"achieve":[40],"this,":[41],"we":[42,146],"develop":[43],"algorithm":[45],"rooted":[50,68,81],"the":[53,77],"required":[54,98],"constraints.":[55],"The":[56],"idea":[57],"our":[59,87,136,144],"define":[63],"canonical":[65,78],"representation":[66,79],"by":[75],"generating":[76,114],"graphs.":[82],"An":[83],"feature":[85],"for":[91],"integer":[93],"n\u22651,":[94],"it":[95,132],"generates":[96],"n":[101],"vertices":[102],"in":[103,111],"O(n)":[104,109],"time":[105],"per":[106],"graph":[107],"space":[110],"total,":[112],"without":[113],"invalid":[115],"intermediate":[116],"structures.":[117],"performed":[119],"some":[120],"experiments":[121],"from":[130],"which":[131],"evident":[134],"efficient.":[139],"As":[140],"application":[142],"method,":[145],"can":[147],"generate":[148],"polymer":[150],"topologies":[151]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
