{"id":"https://openalex.org/W3083701422","doi":"https://doi.org/10.3390/e22090986","title":"Antifragility Predicts the Robustness and Evolvability of Biological Networks through Multi-Class Classification with a Convolutional Neural Network","display_name":"Antifragility Predicts the Robustness and Evolvability of Biological Networks through Multi-Class Classification with a Convolutional Neural Network","publication_year":2020,"publication_date":"2020-09-04","ids":{"openalex":"https://openalex.org/W3083701422","doi":"https://doi.org/10.3390/e22090986","mag":"3083701422","pmid":"https://pubmed.ncbi.nlm.nih.gov/33286756"},"language":"en","primary_location":{"id":"doi:10.3390/e22090986","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e22090986","pdf_url":"https://www.mdpi.com/1099-4300/22/9/986/pdf?version=1599219033","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/22/9/986/pdf?version=1599219033","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077986984","display_name":"Hyobin Kim","orcid":"https://orcid.org/0000-0002-4856-7415"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Hyobin Kim","raw_affiliation_strings":["Biotech Research and Innovation Centre (BRIC), University of Copenhagen (UCPH), 2200 Copenhagen, Denmark","Novo Nordisk Foundation Center for Stem Cell Biology, DanStem, Faculty of Health Sciences, University of Copenhagen, 2200 Copenhagen, Denmark"],"affiliations":[{"raw_affiliation_string":"Biotech Research and Innovation Centre (BRIC), University of Copenhagen (UCPH), 2200 Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Novo Nordisk Foundation Center for Stem Cell Biology, DanStem, Faculty of Health Sciences, University of Copenhagen, 2200 Copenhagen, Denmark","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I124055696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084308396","display_name":"Stalin Mu\u00f1oz","orcid":"https://orcid.org/0000-0001-6259-1609"},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Stalin Mu\u00f1oz","raw_affiliation_strings":["Institute for Software Technology (IST), Graz University of Technology, 8010 Graz, Austria"],"affiliations":[{"raw_affiliation_string":"Institute for Software Technology (IST), Graz University of Technology, 8010 Graz, Austria","institution_ids":["https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072782955","display_name":"Pamela Osuna","orcid":null},"institutions":[{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pamela Osuna","raw_affiliation_strings":["Facult\u00e9 des Sciences et Ing\u00e9nierie, Sorbonne Universit\u00e9, 75005 Paris, France"],"affiliations":[{"raw_affiliation_string":"Facult\u00e9 des Sciences et Ing\u00e9nierie, Sorbonne Universit\u00e9, 75005 Paris, France","institution_ids":["https://openalex.org/I39804081"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020377067","display_name":"Carlos Gershenson","orcid":"https://orcid.org/0000-0003-0193-3067"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]},{"id":"https://openalex.org/I173089394","display_name":"ITMO University","ror":"https://ror.org/04txgxn49","country_code":"RU","type":"education","lineage":["https://openalex.org/I173089394"]}],"countries":["MX","RU"],"is_corresponding":true,"raw_author_name":"Carlos Gershenson","raw_affiliation_strings":["Centro de Ciencias de la Complejidad, Universidad Nacional Aut\u00f3noma de M\u00e9xico, CDMX 04510, Mexico","Department of High Performance Computing, ITMO University, 199034 St. Petersburg, Russia","Instituto de Investigaciones en Matem\u00e1ticas Aplicadas y en Sistemas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, CDMX 04510, Mexico"],"affiliations":[{"raw_affiliation_string":"Centro de Ciencias de la Complejidad, Universidad Nacional Aut\u00f3noma de M\u00e9xico, CDMX 04510, Mexico","institution_ids":["https://openalex.org/I8961855"]},{"raw_affiliation_string":"Department of High Performance Computing, ITMO University, 199034 St. Petersburg, Russia","institution_ids":["https://openalex.org/I173089394"]},{"raw_affiliation_string":"Instituto de Investigaciones en Matem\u00e1ticas Aplicadas y en Sistemas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, CDMX 04510, Mexico","institution_ids":["https://openalex.org/I8961855"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5020377067"],"corresponding_institution_ids":["https://openalex.org/I173089394","https://openalex.org/I8961855"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":0.918,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.73415762,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"22","issue":"9","first_page":"986","last_page":"986"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/evolvability","display_name":"Evolvability","score":0.9752033948898315},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.8767567873001099},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.7406857013702393},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6987740397453308},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6160005331039429},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5926766991615295},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4932817816734314},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.44437146186828613},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16522103548049927},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.13746920228004456}],"concepts":[{"id":"https://openalex.org/C176147130","wikidata":"https://www.wikidata.org/wiki/Q909622","display_name":"Evolvability","level":2,"score":0.9752033948898315},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.8767567873001099},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.7406857013702393},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6987740397453308},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6160005331039429},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5926766991615295},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4932817816734314},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.44437146186828613},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16522103548049927},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.13746920228004456},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3390/e22090986","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e22090986","pdf_url":"https://www.mdpi.com/1099-4300/22/9/986/pdf?version=1599219033","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmid:33286756","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33286756","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy (Basel, Switzerland)","raw_type":null},{"id":"pmh:oai:doaj.org/article:433bcaf59d04455b914e29419b928026","is_oa":true,"landing_page_url":"https://doaj.org/article/433bcaf59d04455b914e29419b928026","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 22, Iss 9, p 986 (2020)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/1099-4300/22/9/986/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/e22090986","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy; Volume 22; Issue 9; Pages: 986","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7597304","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7597304","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy (Basel)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/e22090986","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e22090986","pdf_url":"https://www.mdpi.com/1099-4300/22/9/986/pdf?version=1599219033","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8443311978","display_name":null,"funder_award_id":"PAPIIT projects IN107919 and IV100120","funder_id":"https://openalex.org/F4320323401","funder_display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico"}],"funders":[{"id":"https://openalex.org/F4320323401","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3083701422.pdf","grobid_xml":"https://content.openalex.org/works/W3083701422.grobid-xml"},"referenced_works_count":81,"referenced_works":["https://openalex.org/W628096037","https://openalex.org/W816410171","https://openalex.org/W1499242909","https://openalex.org/W1501606775","https://openalex.org/W1756977403","https://openalex.org/W1830855051","https://openalex.org/W1833452641","https://openalex.org/W1886819223","https://openalex.org/W1893780978","https://openalex.org/W1917278569","https://openalex.org/W1966716734","https://openalex.org/W1971224531","https://openalex.org/W1973794311","https://openalex.org/W1986686712","https://openalex.org/W1993346355","https://openalex.org/W1994540622","https://openalex.org/W1997325064","https://openalex.org/W1998356614","https://openalex.org/W2006088003","https://openalex.org/W2006413392","https://openalex.org/W2019298863","https://openalex.org/W2021009967","https://openalex.org/W2022111336","https://openalex.org/W2033637309","https://openalex.org/W2042431901","https://openalex.org/W2042459594","https://openalex.org/W2044931949","https://openalex.org/W2049047355","https://openalex.org/W2053961182","https://openalex.org/W2067094788","https://openalex.org/W2078734575","https://openalex.org/W2084064588","https://openalex.org/W2088259098","https://openalex.org/W2089755546","https://openalex.org/W2097144068","https://openalex.org/W2104185643","https://openalex.org/W2104933073","https://openalex.org/W2105557836","https://openalex.org/W2119620862","https://openalex.org/W2124278065","https://openalex.org/W2126072041","https://openalex.org/W2128937741","https://openalex.org/W2132935366","https://openalex.org/W2134978629","https://openalex.org/W2141545875","https://openalex.org/W2142072523","https://openalex.org/W2143902672","https://openalex.org/W2146009166","https://openalex.org/W2148143831","https://openalex.org/W2166214692","https://openalex.org/W2168221215","https://openalex.org/W2168338628","https://openalex.org/W2171421390","https://openalex.org/W2174575960","https://openalex.org/W2235371662","https://openalex.org/W2271801128","https://openalex.org/W2296679604","https://openalex.org/W2512356160","https://openalex.org/W2587641917","https://openalex.org/W2603027151","https://openalex.org/W2638209134","https://openalex.org/W2790194617","https://openalex.org/W2883366942","https://openalex.org/W2906301914","https://openalex.org/W2941492800","https://openalex.org/W2950492971","https://openalex.org/W2959602562","https://openalex.org/W2962786587","https://openalex.org/W2963900352","https://openalex.org/W2992850192","https://openalex.org/W3100382271","https://openalex.org/W3101870908","https://openalex.org/W3102930440","https://openalex.org/W3102942441","https://openalex.org/W3104731325","https://openalex.org/W4211017114","https://openalex.org/W4213389620","https://openalex.org/W4229858630","https://openalex.org/W4241088457","https://openalex.org/W4251146723","https://openalex.org/W4388252848"],"related_works":["https://openalex.org/W2105160260","https://openalex.org/W2949901729","https://openalex.org/W2922935424","https://openalex.org/W2571877704","https://openalex.org/W2122461052","https://openalex.org/W1781524388","https://openalex.org/W2040177850","https://openalex.org/W3005393963","https://openalex.org/W3083701422","https://openalex.org/W2003938058"],"abstract_inverted_index":{"Robustness":[0],"and":[1,30,56,77,102,113,122,150],"evolvability":[2,57,151],"are":[3],"essential":[4],"properties":[5,119],"to":[6,25,52,116],"the":[7,42,54,81,95,100,118,132,148],"evolution":[8],"of":[9,58,65,74,94,97,120,147,152],"biological":[10,16,59,75,104,153],"networks.":[11,154],"To":[12],"determine":[13],"if":[14],"a":[15,37,49,86,108,145],"network":[17,43,72,111],"is":[18,23],"robust":[19],"and/or":[20],"evolvable,":[21],"it":[22,115],"required":[24],"compare":[26],"its":[27],"functions":[28],"before":[29],"after":[31],"mutations.":[32],"However,":[33],"this":[34,79],"sometimes":[35],"takes":[36],"high":[38],"computational":[39],"cost":[40],"as":[41,80,144],"size":[44],"grows.":[45],"Here,":[46],"we":[47,106,135],"develop":[48],"predictive":[50],"method":[51],"estimate":[53],"robustness":[55,121,149],"networks":[60],"without":[61],"an":[62],"explicit":[63],"comparison":[64],"functions.":[66],"We":[67,124],"measure":[68,140],"antifragility":[69,98,139],"in":[70],"Boolean":[71],"models":[73],"systems":[76],"use":[78],"predictor.":[82],"Antifragility":[83],"occurs":[84],"when":[85],"system":[87],"benefits":[88],"from":[89],"external":[90],"perturbations.":[91],"By":[92],"means":[93],"differences":[96],"between":[99],"original":[101],"mutated":[103],"networks,":[105],"train":[107],"convolutional":[109],"neural":[110],"(CNN)":[112],"test":[114],"classify":[117],"evolvability.":[123],"found":[125],"that":[126,137],"our":[127,138],"CNN":[128],"model":[129],"successfully":[130],"classified":[131],"properties.":[133],"Thus,":[134],"conclude":[136],"can":[141],"be":[142],"used":[143],"predictor":[146]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
