{"id":"https://openalex.org/W3080792179","doi":"https://doi.org/10.3390/e22090942","title":"Models of the Gene Must Inform Data-Mining Strategies in Genomics","display_name":"Models of the Gene Must Inform Data-Mining Strategies in Genomics","publication_year":2020,"publication_date":"2020-08-27","ids":{"openalex":"https://openalex.org/W3080792179","doi":"https://doi.org/10.3390/e22090942","mag":"3080792179","pmid":"https://pubmed.ncbi.nlm.nih.gov/33286713"},"language":"en","primary_location":{"id":"doi:10.3390/e22090942","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e22090942","pdf_url":"https://www.mdpi.com/1099-4300/22/9/942/pdf?version=1598538214","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/22/9/942/pdf?version=1598538214","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039150616","display_name":"\u0141ukasz Huminiecki","orcid":"https://orcid.org/0000-0003-1943-4450"},"institutions":[{"id":"https://openalex.org/I99542240","display_name":"Polish Academy of Sciences","ror":"https://ror.org/01dr6c206","country_code":"PL","type":"funder","lineage":["https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"\u0141ukasz Huminiecki","raw_affiliation_strings":["Department of Molecular Biology, Institute of Genetics and Animal Biotechnology, Polish Academy of Sciences, 00-901 Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, Institute of Genetics and Animal Biotechnology, Polish Academy of Sciences, 00-901 Warsaw, Poland","institution_ids":["https://openalex.org/I99542240"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5039150616"],"corresponding_institution_ids":["https://openalex.org/I99542240"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":0.4173,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.60315877,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"22","issue":"9","first_page":"942","last_page":"942"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reductionism","display_name":"Reductionism","score":0.8047717809677124},{"id":"https://openalex.org/keywords/mendelian-inheritance","display_name":"Mendelian inheritance","score":0.6527290344238281},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.6063612103462219},{"id":"https://openalex.org/keywords/statistical-genetics","display_name":"Statistical genetics","score":0.5736867785453796},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4284178912639618},{"id":"https://openalex.org/keywords/heredity","display_name":"Heredity","score":0.4240614175796509},{"id":"https://openalex.org/keywords/causation","display_name":"Causation","score":0.4171205163002014},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3755013644695282},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.34257328510284424},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.3156018555164337},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3123648762702942},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2707136273384094},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22051581740379333},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.11176469922065735}],"concepts":[{"id":"https://openalex.org/C173366509","wikidata":"https://www.wikidata.org/wiki/Q206829","display_name":"Reductionism","level":2,"score":0.8047717809677124},{"id":"https://openalex.org/C175783326","wikidata":"https://www.wikidata.org/wiki/Q185055","display_name":"Mendelian inheritance","level":3,"score":0.6527290344238281},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.6063612103462219},{"id":"https://openalex.org/C555299818","wikidata":"https://www.wikidata.org/wiki/Q15709513","display_name":"Statistical genetics","level":5,"score":0.5736867785453796},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4284178912639618},{"id":"https://openalex.org/C143098186","wikidata":"https://www.wikidata.org/wiki/Q178694","display_name":"Heredity","level":2,"score":0.4240614175796509},{"id":"https://openalex.org/C166151441","wikidata":"https://www.wikidata.org/wiki/Q4923601","display_name":"Causation","level":2,"score":0.4171205163002014},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3755013644695282},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.34257328510284424},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.3156018555164337},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3123648762702942},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2707136273384094},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22051581740379333},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.11176469922065735}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3390/e22090942","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e22090942","pdf_url":"https://www.mdpi.com/1099-4300/22/9/942/pdf?version=1598538214","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmid:33286713","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33286713","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy (Basel, Switzerland)","raw_type":null},{"id":"pmh:oai:doaj.org/article:31d2b901ffe54e5abbc4f4f4c48893f4","is_oa":true,"landing_page_url":"https://doaj.org/article/31d2b901ffe54e5abbc4f4f4c48893f4","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 22, Iss 9, p 942 (2020)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/1099-4300/22/9/942/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/e22090942","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy; Volume 22; Issue 9; Pages: 942","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7597212","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7597212","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy (Basel)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/e22090942","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e22090942","pdf_url":"https://www.mdpi.com/1099-4300/22/9/942/pdf?version=1598538214","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5409274495","display_name":null,"funder_award_id":"2016/21/P/NZ2/03926","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"}],"funders":[{"id":"https://openalex.org/F4320322511","display_name":"Narodowe Centrum Nauki","ror":"https://ror.org/03ha2q922"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3080792179.pdf","grobid_xml":"https://content.openalex.org/works/W3080792179.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W244629935","https://openalex.org/W1207078050","https://openalex.org/W1496312651","https://openalex.org/W1555334143","https://openalex.org/W1968280305","https://openalex.org/W1973581994","https://openalex.org/W1986223165","https://openalex.org/W1997578267","https://openalex.org/W2009088119","https://openalex.org/W2015373613","https://openalex.org/W2034876799","https://openalex.org/W2053853045","https://openalex.org/W2058409684","https://openalex.org/W2062430015","https://openalex.org/W2062533676","https://openalex.org/W2068702161","https://openalex.org/W2081774262","https://openalex.org/W2088431202","https://openalex.org/W2089553333","https://openalex.org/W2093280246","https://openalex.org/W2095898968","https://openalex.org/W2096525273","https://openalex.org/W2100200514","https://openalex.org/W2103111028","https://openalex.org/W2116298046","https://openalex.org/W2135123683","https://openalex.org/W2138612173","https://openalex.org/W2163480486","https://openalex.org/W2401174558","https://openalex.org/W2413549089","https://openalex.org/W2478103054","https://openalex.org/W2513794870","https://openalex.org/W2603635410","https://openalex.org/W2612575796","https://openalex.org/W2794999358","https://openalex.org/W2809507491","https://openalex.org/W2915952732","https://openalex.org/W2971586943","https://openalex.org/W2995023588","https://openalex.org/W3172753173","https://openalex.org/W4206563395","https://openalex.org/W4235051201","https://openalex.org/W4245543257","https://openalex.org/W4251922469","https://openalex.org/W4300792832","https://openalex.org/W4388295091","https://openalex.org/W6600118949","https://openalex.org/W6676930282","https://openalex.org/W6712893445"],"related_works":["https://openalex.org/W4206533562","https://openalex.org/W4312248806","https://openalex.org/W2889309003","https://openalex.org/W194366613","https://openalex.org/W4238381144","https://openalex.org/W2491325501","https://openalex.org/W1997583791","https://openalex.org/W2797201452","https://openalex.org/W2004485570","https://openalex.org/W1984928758"],"abstract_inverted_index":{"The":[0],"gene":[1,36,91,148],"is":[2,44,149],"a":[3,110,152],"fundamental":[4],"concept":[5,25,67,88],"of":[6,14,19,34,41,65,86,89,95,113,118,131,140,144],"genetics,":[7,42,47,49,51,77],"which":[8],"emerged":[9],"with":[10],"the":[11,17,20,24,35,63,66,87,90,93,107,124,129,132,138,147],"Mendelian":[12],"paradigm":[13],"heredity":[15],"at":[16],"beginning":[18],"20th":[21],"century.":[22],"However,":[23],"has":[26],"since":[27],"diversified.":[28],"Somewhat":[29],"different":[30],"narratives":[31,105],"and":[32,70,78,97,103],"models":[33],"developed":[37],"in":[38,45,56,92,128],"several":[39],"sub-disciplines":[40],"that":[43,137],"classical":[46],"population":[48],"molecular":[50],"genomics,":[52,75],"and,":[53],"recently,":[54],"also,":[55],"systems":[57],"genetics.":[58],"Here,":[59],"I":[60,81,135],"ask":[61],"how":[62],"diversity":[64],"impacts":[68],"data-integration":[69],"data-mining":[71,119],"strategies":[72,112],"for":[73,146,151],"bioinformatics,":[74],"statistical":[76],"data":[79],"science.":[80],"also":[82],"consider":[83],"theoretical":[84,133],"background":[85],"ideas":[94],"empiricism":[96],"experimentalism,":[98],"as":[99,101],"well":[100],"reductionist":[102],"anti-reductionist":[104],"on":[106],"concept.":[108],"Finally,":[109],"few":[111],"analysis":[114],"from":[115],"published":[116],"examples":[117,125],"projects":[120],"are":[121,126],"discussed.":[122],"Moreover,":[123],"re-interpreted":[127],"light":[130],"material.":[134],"argue":[136],"choice":[139],"an":[141],"optimal":[142],"level":[143],"abstraction":[145],"vital":[150],"successful":[153],"genome":[154],"analysis.":[155]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
