{"id":"https://openalex.org/W3008164819","doi":"https://doi.org/10.3390/e22020255","title":"Phylogenetic Analysis of HIV-1 Genomes Based on the Position-Weighted K-mers Method","display_name":"Phylogenetic Analysis of HIV-1 Genomes Based on the Position-Weighted K-mers Method","publication_year":2020,"publication_date":"2020-02-23","ids":{"openalex":"https://openalex.org/W3008164819","doi":"https://doi.org/10.3390/e22020255","mag":"3008164819","pmid":"https://pubmed.ncbi.nlm.nih.gov/33286029"},"language":"en","primary_location":{"id":"doi:10.3390/e22020255","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e22020255","pdf_url":"https://www.mdpi.com/1099-4300/22/2/255/pdf?version=1582891981","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/22/2/255/pdf?version=1582891981","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101683301","display_name":"Yuanlin Ma","orcid":"https://orcid.org/0000-0002-7811-7298"},"institutions":[{"id":"https://openalex.org/I192868223","display_name":"Zhengzhou University of Aeronautics","ror":"https://ror.org/01qjyzh50","country_code":"CN","type":"education","lineage":["https://openalex.org/I192868223"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanlin Ma","raw_affiliation_strings":["Hunan Key Laboratory for Computation and Simulation in Science and Engineering and Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education, Xiangtan University, Xiangtan 411105, China","School of Economics, Zhengzhou University of Aeronautics, Zhengzhou 450046, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Key Laboratory for Computation and Simulation in Science and Engineering and Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education, Xiangtan University, Xiangtan 411105, China","institution_ids":["https://openalex.org/I4610292"]},{"raw_affiliation_string":"School of Economics, Zhengzhou University of Aeronautics, Zhengzhou 450046, China","institution_ids":["https://openalex.org/I192868223"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026047510","display_name":"Zu\u2010Guo Yu","orcid":"https://orcid.org/0000-0001-5913-9646"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["AU","CN"],"is_corresponding":true,"raw_author_name":"Zuguo Yu","raw_affiliation_strings":["Hunan Key Laboratory for Computation and Simulation in Science and Engineering and Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education, Xiangtan University, Xiangtan 411105, China","School of Electrical Engineering and Computer Science, Queensland University of Technology, GPO Box 2434, Brisbane, QLD 4001, Australia"],"raw_orcid":"https://orcid.org/0000-0001-5913-9646","affiliations":[{"raw_affiliation_string":"Hunan Key Laboratory for Computation and Simulation in Science and Engineering and Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education, Xiangtan University, Xiangtan 411105, China","institution_ids":["https://openalex.org/I4610292"]},{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Queensland University of Technology, GPO Box 2434, Brisbane, QLD 4001, Australia","institution_ids":["https://openalex.org/I160993911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079936890","display_name":"Runbin Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Runbin Tang","raw_affiliation_strings":["Hunan Key Laboratory for Computation and Simulation in Science and Engineering and Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education, Xiangtan University, Xiangtan 411105, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Key Laboratory for Computation and Simulation in Science and Engineering and Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education, Xiangtan University, Xiangtan 411105, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102213964","display_name":"Xian-Hua Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119042","display_name":"Gannan Normal University","ror":"https://ror.org/02jf7e446","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210119042"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xianhua Xie","raw_affiliation_strings":["School of Mathematical and Computer Science, Gannan Normal University, Ganzhou 341000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematical and Computer Science, Gannan Normal University, Ganzhou 341000, China","institution_ids":["https://openalex.org/I4210119042"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062084611","display_name":"Guosheng Han","orcid":"https://orcid.org/0000-0002-7712-6213"},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guosheng Han","raw_affiliation_strings":["Hunan Key Laboratory for Computation and Simulation in Science and Engineering and Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education, Xiangtan University, Xiangtan 411105, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Key Laboratory for Computation and Simulation in Science and Engineering and Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education, Xiangtan University, Xiangtan 411105, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061268303","display_name":"Vo Anh","orcid":"https://orcid.org/0000-0003-2463-2099"},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]},{"id":"https://openalex.org/I57093077","display_name":"Swinburne University of Technology","ror":"https://ror.org/031rekg67","country_code":"AU","type":"education","lineage":["https://openalex.org/I57093077"]}],"countries":["AU","CN"],"is_corresponding":false,"raw_author_name":"Vo V. Anh","raw_affiliation_strings":["Faculty of Science, Engineering and Technology, Swinburne University of Technology, P.O. Box 218, Hawthorn, VIC 3122, Australia","Hunan Key Laboratory for Computation and Simulation in Science and Engineering and Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education, Xiangtan University, Xiangtan 411105, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Science, Engineering and Technology, Swinburne University of Technology, P.O. Box 218, Hawthorn, VIC 3122, Australia","institution_ids":["https://openalex.org/I57093077"]},{"raw_affiliation_string":"Hunan Key Laboratory for Computation and Simulation in Science and Engineering and Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education, Xiangtan University, Xiangtan 411105, China","institution_ids":["https://openalex.org/I4610292"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5026047510"],"corresponding_institution_ids":["https://openalex.org/I160993911","https://openalex.org/I4610292"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2227},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2227},"fwci":0.7455,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.67216127,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"22","issue":"2","first_page":"255","last_page":"255"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9787999987602234,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.8710304498672485},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7518553137779236},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5700976252555847},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5626815557479858},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5492407083511353},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.5418910980224609},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.5358373522758484},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.4835059940814972},{"id":"https://openalex.org/keywords/pathogenicity","display_name":"Pathogenicity","score":0.4358316659927368},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.4356841444969177},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3830973207950592},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.22267982363700867},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14899438619613647},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.06352868676185608}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.8710304498672485},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7518553137779236},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5700976252555847},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5626815557479858},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5492407083511353},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.5418910980224609},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.5358373522758484},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.4835059940814972},{"id":"https://openalex.org/C64502627","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogenicity","level":2,"score":0.4358316659927368},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.4356841444969177},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3830973207950592},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.22267982363700867},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14899438619613647},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.06352868676185608},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.3390/e22020255","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e22020255","pdf_url":"https://www.mdpi.com/1099-4300/22/2/255/pdf?version=1582891981","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmid:33286029","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33286029","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy (Basel, Switzerland)","raw_type":null},{"id":"pmh:oai:doaj.org/article:a9a4bc8cb5124bbd89b8f455d4d6fd97","is_oa":true,"landing_page_url":"https://doaj.org/article/a9a4bc8cb5124bbd89b8f455d4d6fd97","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 22, Iss 2, p 255 (2020)","raw_type":"article"},{"id":"pmh:oai:eprints.qut.edu.au:229124","is_oa":true,"landing_page_url":"http://purl.org/au-research/grants/arc/DP160101366","pdf_url":null,"source":{"id":"https://openalex.org/S4306402607","display_name":"QUT ePrints (Queensland University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I160993911","host_organization_name":"Queensland University of Technology","host_organization_lineage":["https://openalex.org/I160993911"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy","raw_type":"Contribution to Journal"},{"id":"pmh:oai:mdpi.com:/1099-4300/22/2/255/","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3390/e22020255","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7516702","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7516702","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy (Basel)","raw_type":"Text"},{"id":"pmh:oai:researchbank.swinburne.edu.au:65bdbaa4-ddcc-4890-a6d8-37a0a4e496f1/1","is_oa":false,"landing_page_url":"http://hdl.handle.net/1959.3/454424","pdf_url":null,"source":{"id":"https://openalex.org/S4306401157","display_name":"Swinburne Research Bank (Swinburne University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I57093077","host_organization_name":"Swinburne University of Technology","host_organization_lineage":["https://openalex.org/I57093077"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol. 22, no. 2 (Feb 2020), article no. 255","raw_type":null}],"best_oa_location":{"id":"doi:10.3390/e22020255","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e22020255","pdf_url":"https://www.mdpi.com/1099-4300/22/2/255/pdf?version=1582891981","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7599999904632568,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G4433020216","display_name":"New Methods in Theory and Cosmic Applications of Spherical Random Fields","funder_award_id":"DP160101366","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G4883758742","display_name":null,"funder_award_id":"11871061,61828203","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8486255770","display_name":"\u5206\u5f62\u65f6\u95f4\u5e8f\u5217\u548c\u590d\u6742\u7f51\u7edc\u7684\u91cd\u5206\u5f62\u5206\u6790\u53ca\u5176\u5728\u51e0\u4e2a\u751f\u7269\u4fe1\u606f\u95ee\u9898\u4e2d\u7684\u5e94\u7528\u7814\u7a76","funder_award_id":"11871061","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8732994852","display_name":null,"funder_award_id":"61828203","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320325626","display_name":"Education Department of Jiangxi Province","ror":null},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3008164819.pdf","grobid_xml":"https://content.openalex.org/works/W3008164819.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W242631229","https://openalex.org/W1552007825","https://openalex.org/W1569896650","https://openalex.org/W1974490028","https://openalex.org/W1983181257","https://openalex.org/W1989004319","https://openalex.org/W1989743311","https://openalex.org/W1990670393","https://openalex.org/W1997833643","https://openalex.org/W1999786367","https://openalex.org/W2015854634","https://openalex.org/W2020755434","https://openalex.org/W2033246310","https://openalex.org/W2045895701","https://openalex.org/W2046363324","https://openalex.org/W2058896194","https://openalex.org/W2060425093","https://openalex.org/W2079436890","https://openalex.org/W2094890728","https://openalex.org/W2097706568","https://openalex.org/W2105160534","https://openalex.org/W2111273085","https://openalex.org/W2126531452","https://openalex.org/W2135785743","https://openalex.org/W2137015675","https://openalex.org/W2138486754","https://openalex.org/W2165012549","https://openalex.org/W2166162901","https://openalex.org/W2167272772","https://openalex.org/W2197244544","https://openalex.org/W2311203695","https://openalex.org/W2598176148","https://openalex.org/W2761430568","https://openalex.org/W2810326626","https://openalex.org/W2901365579","https://openalex.org/W2916691697","https://openalex.org/W2950430358","https://openalex.org/W2951725148","https://openalex.org/W3175529281","https://openalex.org/W3176183162","https://openalex.org/W6634170231","https://openalex.org/W6674647444","https://openalex.org/W6797332963"],"related_works":["https://openalex.org/W4254268221","https://openalex.org/W2038264393","https://openalex.org/W147282674","https://openalex.org/W2112400707","https://openalex.org/W2101991559","https://openalex.org/W4300585845","https://openalex.org/W2152997891","https://openalex.org/W2065083790","https://openalex.org/W2604174992","https://openalex.org/W2057191541"],"abstract_inverted_index":{"HIV-1":[0,44,112,127],"viruses,":[1,10],"which":[2],"are":[3],"predominant":[4],"in":[5,23],"the":[6,40,53,58,61,71,79,88,93,108],"family":[7],"of":[8,43,60,111,123,126],"HIV":[9],"have":[11],"strong":[12],"pathogenicity":[13],"and":[14,35,57,85,92,133],"infectivity.":[15],"They":[16],"can":[17,115],"evolve":[18],"into":[19],"many":[20],"different":[21,120],"variants":[22],"a":[24,33,67,98],"very":[25],"short":[26],"time.":[27],"In":[28],"this":[29],"study,":[30],"we":[31],"propose":[32,66],"new":[34],"effective":[36],"alignment-free":[37],"method":[38,51,78,91,96,104,130],"for":[39,107,119,136],"phylogenetic":[41,109,139],"analysis":[42,110],"viruses":[45],"using":[46],"complete":[47],"genome":[48,138],"sequences.":[49],"Our":[50],"combines":[52],"position":[54],"distribution":[55],"information":[56],"counts":[59],"k-mers":[62,81],"together.":[63],"We":[64,75],"also":[65],"metric":[68],"to":[69],"determine":[70],"optimal":[72],"k":[73],"value.":[74],"name":[76],"our":[77,103],"Position-Weighted":[80],"(PWkmer)":[82],"method.":[83],"Validation":[84],"comparison":[86],"with":[87],"Robinson\u2013Foulds":[89],"distance":[90],"modified":[94],"bootstrap":[95],"on":[97],"benchmark":[99],"dataset":[100],"show":[101],"that":[102],"is":[105,131],"reliable":[106],"viruses.":[113,128],"PWkmer":[114],"resolve":[116],"within-group":[117],"variations":[118],"known":[121],"subtypes":[122],"Group":[124],"M":[125],"This":[129],"simple":[132],"computationally":[134],"fast":[135],"whole":[137],"analysis.":[140]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
