{"id":"https://openalex.org/W2989917181","doi":"https://doi.org/10.3390/e21121139","title":"Ensemble and Greedy Approach for the Reconstruction of Large Gene Co-Expression Networks","display_name":"Ensemble and Greedy Approach for the Reconstruction of Large Gene Co-Expression Networks","publication_year":2019,"publication_date":"2019-11-21","ids":{"openalex":"https://openalex.org/W2989917181","doi":"https://doi.org/10.3390/e21121139","mag":"2989917181"},"language":"en","primary_location":{"id":"doi:10.3390/e21121139","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e21121139","pdf_url":"https://www.mdpi.com/1099-4300/21/12/1139/pdf?version=1574735222","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/21/12/1139/pdf?version=1574735222","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067223222","display_name":"Francisco G\u00f3mez-Vela","orcid":"https://orcid.org/0000-0001-7376-5790"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Francisco G\u00f3mez-Vela","raw_affiliation_strings":["Computer Science Division, Pablo de Olavide University, ES-41013 Seville, Spain"],"raw_orcid":"https://orcid.org/0000-0001-7376-5790","affiliations":[{"raw_affiliation_string":"Computer Science Division, Pablo de Olavide University, ES-41013 Seville, Spain","institution_ids":["https://openalex.org/I95013407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067900374","display_name":"Fernando M. Delgado-Chaves","orcid":"https://orcid.org/0000-0002-6171-1215"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Fernando M. Delgado-Chaves","raw_affiliation_strings":["Faculty of Experimental Sciences, Pablo de Olavide University, ES-41013 Seville, Spain"],"raw_orcid":"https://orcid.org/0000-0002-6171-1215","affiliations":[{"raw_affiliation_string":"Faculty of Experimental Sciences, Pablo de Olavide University, ES-41013 Seville, Spain","institution_ids":["https://openalex.org/I95013407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037309552","display_name":"Domingo S. Rodr\u00edguez\u2013Baena","orcid":"https://orcid.org/0000-0001-9801-9364"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Domingo S. Rodr\u00edguez-Baena","raw_affiliation_strings":["Computer Science Division, Pablo de Olavide University, ES-41013 Seville, Spain"],"raw_orcid":"https://orcid.org/0000-0001-9801-9364","affiliations":[{"raw_affiliation_string":"Computer Science Division, Pablo de Olavide University, ES-41013 Seville, Spain","institution_ids":["https://openalex.org/I95013407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056656076","display_name":"Miguel Garc\u00eda-Torres","orcid":"https://orcid.org/0000-0002-6867-7080"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miguel Garc\u00eda-Torres","raw_affiliation_strings":["Computer Science Division, Pablo de Olavide University, ES-41013 Seville, Spain"],"raw_orcid":"https://orcid.org/0000-0002-6867-7080","affiliations":[{"raw_affiliation_string":"Computer Science Division, Pablo de Olavide University, ES-41013 Seville, Spain","institution_ids":["https://openalex.org/I95013407"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043334355","display_name":"Federico Divina","orcid":"https://orcid.org/0000-0002-0964-9506"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Federico Divina","raw_affiliation_strings":["Computer Science Division, Pablo de Olavide University, ES-41013 Seville, Spain"],"raw_orcid":"https://orcid.org/0000-0002-0964-9506","affiliations":[{"raw_affiliation_string":"Computer Science Division, Pablo de Olavide University, ES-41013 Seville, Spain","institution_ids":["https://openalex.org/I95013407"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5067223222"],"corresponding_institution_ids":["https://openalex.org/I95013407"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":0.0854,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.48921853,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"21","issue":"12","first_page":"1139","last_page":"1139"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6609996557235718},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.584918737411499},{"id":"https://openalex.org/keywords/curse-of-dimensionality","display_name":"Curse of dimensionality","score":0.5805763602256775},{"id":"https://openalex.org/keywords/greedy-algorithm","display_name":"Greedy algorithm","score":0.5564238429069519},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.550020158290863},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5312539935112},{"id":"https://openalex.org/keywords/dimensionality-reduction","display_name":"Dimensionality reduction","score":0.44274333119392395},{"id":"https://openalex.org/keywords/network-topology","display_name":"Network topology","score":0.43936556577682495},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.41874265670776367},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38570451736450195},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3569028973579407},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.28917425870895386},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1720571517944336},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15199682116508484},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.13426616787910461}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6609996557235718},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.584918737411499},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.5805763602256775},{"id":"https://openalex.org/C51823790","wikidata":"https://www.wikidata.org/wiki/Q504353","display_name":"Greedy algorithm","level":2,"score":0.5564238429069519},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.550020158290863},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5312539935112},{"id":"https://openalex.org/C70518039","wikidata":"https://www.wikidata.org/wiki/Q16000077","display_name":"Dimensionality reduction","level":2,"score":0.44274333119392395},{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.43936556577682495},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.41874265670776367},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38570451736450195},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3569028973579407},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.28917425870895386},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1720571517944336},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15199682116508484},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.13426616787910461},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3390/e21121139","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e21121139","pdf_url":"https://www.mdpi.com/1099-4300/21/12/1139/pdf?version=1574735222","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:5d508af409514083ab8d3d4edb06e947","is_oa":true,"landing_page_url":"https://doaj.org/article/5d508af409514083ab8d3d4edb06e947","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 21, Iss 12, p 1139 (2019)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/1099-4300/21/12/1139/","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3390/e21121139","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7514484","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7514484","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy (Basel)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/e21121139","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e21121139","pdf_url":"https://www.mdpi.com/1099-4300/21/12/1139/pdf?version=1574735222","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":69,"referenced_works":["https://openalex.org/W1502421007","https://openalex.org/W1508717233","https://openalex.org/W1963522244","https://openalex.org/W1965680834","https://openalex.org/W1966327575","https://openalex.org/W1967160581","https://openalex.org/W1967934074","https://openalex.org/W1985213868","https://openalex.org/W2018440916","https://openalex.org/W2021034217","https://openalex.org/W2026875682","https://openalex.org/W2034662766","https://openalex.org/W2049918045","https://openalex.org/W2062533676","https://openalex.org/W2064503573","https://openalex.org/W2070978538","https://openalex.org/W2071832153","https://openalex.org/W2072789685","https://openalex.org/W2076683000","https://openalex.org/W2078149659","https://openalex.org/W2083045667","https://openalex.org/W2093982682","https://openalex.org/W2099807710","https://openalex.org/W2103453943","https://openalex.org/W2106474670","https://openalex.org/W2109138480","https://openalex.org/W2109384743","https://openalex.org/W2115547583","https://openalex.org/W2128150566","https://openalex.org/W2133984660","https://openalex.org/W2144250748","https://openalex.org/W2144656637","https://openalex.org/W2147301894","https://openalex.org/W2150649057","https://openalex.org/W2152026276","https://openalex.org/W2154915765","https://openalex.org/W2167602547","https://openalex.org/W2169589032","https://openalex.org/W2170522361","https://openalex.org/W2179438025","https://openalex.org/W2193699608","https://openalex.org/W2215874340","https://openalex.org/W2216025303","https://openalex.org/W2247685774","https://openalex.org/W2258294038","https://openalex.org/W2291152573","https://openalex.org/W2312599005","https://openalex.org/W2345508925","https://openalex.org/W2498761000","https://openalex.org/W2529121416","https://openalex.org/W2554852526","https://openalex.org/W2582013696","https://openalex.org/W2726940915","https://openalex.org/W2741327874","https://openalex.org/W2768663336","https://openalex.org/W2794479004","https://openalex.org/W2804715272","https://openalex.org/W2808263665","https://openalex.org/W2895842572","https://openalex.org/W2900099657","https://openalex.org/W2910970898","https://openalex.org/W2911763677","https://openalex.org/W2915085755","https://openalex.org/W2950501469","https://openalex.org/W3006625161","https://openalex.org/W6673840355","https://openalex.org/W6746020527","https://openalex.org/W6763723993","https://openalex.org/W6773696938"],"related_works":["https://openalex.org/W1995622179","https://openalex.org/W1484111231","https://openalex.org/W4391160746","https://openalex.org/W1552543208","https://openalex.org/W2074396517","https://openalex.org/W2166963679","https://openalex.org/W2187269125","https://openalex.org/W1641615907","https://openalex.org/W3089231081","https://openalex.org/W2093956241"],"abstract_inverted_index":{"Gene":[0],"networks":[1,25,102,110,120],"have":[2,50],"become":[3],"a":[4,90,104,123,172],"powerful":[5],"tool":[6],"in":[7,35,73,195],"the":[8,16,30,36,39,42,53,64,74,77,80,128,131,135,161,164,192,196],"comprehensive":[9],"analysis":[10],"of":[11,19,33,41,55,76,79,134,163,191,198],"gene":[12,109],"expression.":[13],"Due":[14],"to":[15,148,171,184],"increasing":[17],"amount":[18],"available":[20],"data,":[21],"computational":[22],"methods":[23],"for":[24,38,108,118],"generation":[26],"must":[27],"deal":[28],"with":[29],"so-called":[31],"curse":[32],"dimensionality":[34],"quest":[37],"reliability":[40],"obtained":[43],"results.":[44],"In":[45,94],"this":[46,95,144,185],"context,":[47],"ensemble":[48,116],"strategies":[49],"significantly":[51,156],"improved":[52],"precision":[54],"results":[56,141,188],"by":[57,168],"combining":[58],"different":[59],"measures":[60],"or":[61],"methods.":[62],"On":[63],"other":[65],"hand,":[66],"structure":[67],"optimization":[68],"techniques":[69],"are":[70,189],"also":[71,88,153],"important":[72],"reduction":[75],"size":[78,129],"networks,":[81,151],"not":[82],"only":[83,138],"improving":[84],"their":[85],"topology":[86],"but":[87,152],"keeping":[89],"positive":[91],"prediction":[92],"ratio.":[93],"work,":[96],"we":[97],"present":[98],"Ensemble":[99],"and":[100,130,201],"Greedy":[101],"(EnGNet),":[103],"novel":[105],"two-step":[106],"method":[107,145,165],"inference.":[111],"First,":[112],"EnGNet":[113],"uses":[114],"an":[115,169,180],"strategy":[117],"co-expression":[119],"generation.":[121],"Second,":[122],"greedy":[124],"algorithm":[125],"optimizes":[126],"both":[127],"topological":[132,158],"features":[133],"network.":[136],"Not":[137],"do":[139],"achieved":[140],"show":[142],"that":[143,154],"is":[146,166],"able":[147],"obtain":[149],"reliable":[150],"it":[155],"improves":[157],"features.":[159],"Moreover,":[160],"usefulness":[162],"proven":[167],"application":[170],"human":[173],"dataset":[174],"on":[175],"post-traumatic":[176],"stress":[177],"disorder,":[178],"revealing":[179],"innate":[181],"immunity-mediated":[182],"response":[183],"pathology.":[186],"These":[187],"indicative":[190],"method\u2019s":[193],"potential":[194],"field":[197],"biomarkers":[199],"discovery":[200],"characterization.":[202]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2020,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
