{"id":"https://openalex.org/W2955270221","doi":"https://doi.org/10.3390/e21070635","title":"Prediction of MoRFs in Protein Sequences with MLPs Based on Sequence Properties and Evolution Information","display_name":"Prediction of MoRFs in Protein Sequences with MLPs Based on Sequence Properties and Evolution Information","publication_year":2019,"publication_date":"2019-06-27","ids":{"openalex":"https://openalex.org/W2955270221","doi":"https://doi.org/10.3390/e21070635","mag":"2955270221","pmid":"https://pubmed.ncbi.nlm.nih.gov/33267349"},"language":"en","primary_location":{"id":"doi:10.3390/e21070635","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e21070635","pdf_url":"https://www.mdpi.com/1099-4300/21/7/635/pdf?version=1561632280","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/21/7/635/pdf?version=1561632280","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100659294","display_name":"Hao He","orcid":"https://orcid.org/0000-0003-0996-7202"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao He","raw_affiliation_strings":["College of Electronic Information and Optical Engineering, Nankai University, Tianjin 300350, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Electronic Information and Optical Engineering, Nankai University, Tianjin 300350, China","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073649829","display_name":"Jiaxiang Zhao","orcid":"https://orcid.org/0000-0002-2287-0811"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jiaxiang Zhao","raw_affiliation_strings":["College of Electronic Information and Optical Engineering, Nankai University, Tianjin 300350, China"],"raw_orcid":"https://orcid.org/0000-0002-2287-0811","affiliations":[{"raw_affiliation_string":"College of Electronic Information and Optical Engineering, Nankai University, Tianjin 300350, China","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101701886","display_name":"Guiling Sun","orcid":"https://orcid.org/0000-0001-5283-1760"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guiling Sun","raw_affiliation_strings":["College of Electronic Information and Optical Engineering, Nankai University, Tianjin 300350, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Electronic Information and Optical Engineering, Nankai University, Tianjin 300350, China","institution_ids":["https://openalex.org/I205237279"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5073649829"],"corresponding_institution_ids":["https://openalex.org/I205237279"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":0.5898,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.66433436,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"21","issue":"7","first_page":"635","last_page":"635"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.65390944480896},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5796195268630981},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5681607723236084},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5388713479042053},{"id":"https://openalex.org/keywords/perceptron","display_name":"Perceptron","score":0.5348972082138062},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.5010349750518799},{"id":"https://openalex.org/keywords/multilayer-perceptron","display_name":"Multilayer perceptron","score":0.4728910028934479},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.446575790643692},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3908393085002899},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3350750207901001},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15878674387931824}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.65390944480896},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5796195268630981},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5681607723236084},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5388713479042053},{"id":"https://openalex.org/C60908668","wikidata":"https://www.wikidata.org/wiki/Q690207","display_name":"Perceptron","level":3,"score":0.5348972082138062},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.5010349750518799},{"id":"https://openalex.org/C179717631","wikidata":"https://www.wikidata.org/wiki/Q2991667","display_name":"Multilayer perceptron","level":3,"score":0.4728910028934479},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.446575790643692},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3908393085002899},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3350750207901001},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15878674387931824},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3390/e21070635","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e21070635","pdf_url":"https://www.mdpi.com/1099-4300/21/7/635/pdf?version=1561632280","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmid:33267349","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33267349","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy (Basel, Switzerland)","raw_type":null},{"id":"pmh:oai:doaj.org/article:900a07c7e04640839cd8a858aea2ddc7","is_oa":true,"landing_page_url":"https://doaj.org/article/900a07c7e04640839cd8a858aea2ddc7","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 21, Iss 7, p 635 (2019)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/1099-4300/21/7/635/","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3390/e21070635","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7515128","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7515128","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy (Basel)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/e21070635","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e21070635","pdf_url":"https://www.mdpi.com/1099-4300/21/7/635/pdf?version=1561632280","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.6800000071525574}],"awards":[{"id":"https://openalex.org/G3141261596","display_name":"\u878d\u5408\u538b\u7f29\u611f\u77e5\u4e0e\u4f4e\u79e9\u7406\u8bba\u7684\u65e0\u7ebf\u4f20\u611f\u5668\u7f51\u7edc\u56fe\u50cf\u83b7\u53d6\u5173\u952e\u6280\u672f\u7684\u7814\u7a76","funder_award_id":"61771262","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2955270221.pdf","grobid_xml":"https://content.openalex.org/works/W2955270221.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1994151152","https://openalex.org/W2017104289","https://openalex.org/W2021731848","https://openalex.org/W2027035874","https://openalex.org/W2043338013","https://openalex.org/W2055193239","https://openalex.org/W2085656056","https://openalex.org/W2092920038","https://openalex.org/W2095705004","https://openalex.org/W2103743266","https://openalex.org/W2109872885","https://openalex.org/W2110128290","https://openalex.org/W2113985551","https://openalex.org/W2115652057","https://openalex.org/W2120744225","https://openalex.org/W2124707779","https://openalex.org/W2126064524","https://openalex.org/W2148271643","https://openalex.org/W2149285542","https://openalex.org/W2156407548","https://openalex.org/W2158714788","https://openalex.org/W2162980545","https://openalex.org/W2168220711","https://openalex.org/W2169802764","https://openalex.org/W2246311611","https://openalex.org/W2366093519","https://openalex.org/W2790001298","https://openalex.org/W2795402036","https://openalex.org/W2916566995","https://openalex.org/W6674330103","https://openalex.org/W6683179228"],"related_works":["https://openalex.org/W2038474459","https://openalex.org/W2076543106","https://openalex.org/W3158157485","https://openalex.org/W2523437662","https://openalex.org/W89844371","https://openalex.org/W2019891950","https://openalex.org/W2085842814","https://openalex.org/W2789124470","https://openalex.org/W4286643620","https://openalex.org/W3000407446"],"abstract_inverted_index":{"Molecular":[0],"recognition":[1],"features":[2],"(MoRFs)":[3],"are":[4,36],"one":[5],"important":[6],"type":[7],"of":[8,27,34,54,95,115],"intrinsically":[9],"disordered":[10],"proteins":[11],"functional":[12],"regions":[13],"that":[14,134],"can":[15,42],"undergo":[16],"a":[17,52,81,88],"disorder-to-order":[18],"transition":[19],"through":[20],"binding":[21],"to":[22,83,98,103,121,126],"their":[23],"interaction":[24],"partners.":[25],"Prediction":[26],"MoRFs":[28,35,56],"is":[29,57,137],"crucial,":[30],"as":[31],"the":[32,45,61,108,113,130],"functions":[33],"associated":[37],"with":[38,112],"many":[39],"diseases":[40],"and":[41,64,79],"therefore":[43],"become":[44],"potential":[46],"drug":[47],"targets.":[48],"In":[49,124],"this":[50,68],"paper,":[51],"method":[53,136],"predicting":[55],"developed":[58],"based":[59],"on":[60],"sequence":[62],"properties":[63,101],"evolutionary":[65],"information.":[66],"To":[67],"end,":[69],"we":[70],"design":[71],"two":[72,116],"distinct":[73],"multi-layer":[74],"perceptron":[75],"(MLP)":[76],"neural":[77,119],"networks":[78,120],"present":[80],"procedure":[82],"train":[84],"them.":[85],"We":[86,105],"develop":[87],"preprocessing":[89],"process":[90],"which":[91],"exploits":[92],"different":[93],"sizes":[94],"sliding":[96],"windows":[97],"capture":[99],"various":[100],"related":[102],"MoRFs.":[104,123],"then":[106],"use":[107],"Bayes":[109],"rule":[110],"together":[111],"outputs":[114],"trained":[117],"MLP":[118],"predict":[122],"comparison":[125],"several":[127],"state-of-the-art":[128],"methods,":[129],"simulation":[131],"results":[132],"show":[133],"our":[135],"competitive.":[138]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2}],"updated_date":"2026-07-01T08:55:40.977307","created_date":"2025-10-10T00:00:00"}
