{"id":"https://openalex.org/W2626176522","doi":"https://doi.org/10.3390/e19060283","title":"LSTM-CRF for Drug-Named Entity Recognition","display_name":"LSTM-CRF for Drug-Named Entity Recognition","publication_year":2017,"publication_date":"2017-06-17","ids":{"openalex":"https://openalex.org/W2626176522","doi":"https://doi.org/10.3390/e19060283","mag":"2626176522"},"language":"en","primary_location":{"id":"doi:10.3390/e19060283","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e19060283","pdf_url":"https://www.mdpi.com/1099-4300/19/6/283/pdf?version=1497689516","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/19/6/283/pdf?version=1497689516","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085606015","display_name":"Donghuo Zeng","orcid":"https://orcid.org/0000-0002-6425-6270"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Donghuo Zeng","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, 92 West Dazhi Street, Harbin 150001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, 92 West Dazhi Street, Harbin 150001, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033705258","display_name":"Chengjie Sun","orcid":"https://orcid.org/0000-0001-9081-1410"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chengjie Sun","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, 92 West Dazhi Street, Harbin 150001, China"],"raw_orcid":"https://orcid.org/0000-0001-9081-1410","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, 92 West Dazhi Street, Harbin 150001, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048326379","display_name":"Lei Lin","orcid":"https://orcid.org/0000-0002-1161-8565"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Lin","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, 92 West Dazhi Street, Harbin 150001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, 92 West Dazhi Street, Harbin 150001, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004324294","display_name":"Bingquan Liu","orcid":"https://orcid.org/0000-0001-6352-2170"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bingquan Liu","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, 92 West Dazhi Street, Harbin 150001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, 92 West Dazhi Street, Harbin 150001, China","institution_ids":["https://openalex.org/I204983213"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5033705258"],"corresponding_institution_ids":["https://openalex.org/I204983213"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2227},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2227},"fwci":4.6618,"has_fulltext":true,"cited_by_count":102,"citation_normalized_percentile":{"value":0.96037779,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"19","issue":"6","first_page":"283","last_page":"283"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8220475912094116},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.7582140564918518},{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.662034273147583},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6614758372306824},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.6379927396774292},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6197207570075989},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5578297972679138},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.499478816986084},{"id":"https://openalex.org/keywords/word-embedding","display_name":"Word embedding","score":0.4702155888080597},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4637845754623413},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.45228123664855957},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.43841394782066345},{"id":"https://openalex.org/keywords/character","display_name":"Character (mathematics)","score":0.43597400188446045},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.35993826389312744},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.06863772869110107}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8220475912094116},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.7582140564918518},{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.662034273147583},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6614758372306824},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.6379927396774292},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6197207570075989},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5578297972679138},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.499478816986084},{"id":"https://openalex.org/C2777462759","wikidata":"https://www.wikidata.org/wiki/Q18395344","display_name":"Word embedding","level":3,"score":0.4702155888080597},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4637845754623413},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.45228123664855957},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.43841394782066345},{"id":"https://openalex.org/C2780861071","wikidata":"https://www.wikidata.org/wiki/Q1062934","display_name":"Character (mathematics)","level":2,"score":0.43597400188446045},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.35993826389312744},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.06863772869110107},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3390/e19060283","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e19060283","pdf_url":"https://www.mdpi.com/1099-4300/19/6/283/pdf?version=1497689516","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmh:oai:mdpi.com:/1099-4300/19/6/283/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/e19060283","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy; Volume 19; Issue 6; Pages: 283","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/e19060283","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e19060283","pdf_url":"https://www.mdpi.com/1099-4300/19/6/283/pdf?version=1497689516","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5099999904632568,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G3562507197","display_name":"\u9762\u5411\u95ee\u7b54\u793e\u533a\u7684\u4e2d\u6587\u63cf\u8ff0\u6027\u7b54\u6848\u878d\u5408\u6846\u67b6\u53ca\u878d\u5408\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61572151","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3881918265","display_name":null,"funder_award_id":"2015AA015405","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6827545026","display_name":null,"funder_award_id":"61602131","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2626176522.pdf","grobid_xml":"https://content.openalex.org/works/W2626176522.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W12821309","https://openalex.org/W886998232","https://openalex.org/W1498436455","https://openalex.org/W1507447159","https://openalex.org/W1899794420","https://openalex.org/W1971129545","https://openalex.org/W2005228904","https://openalex.org/W2015079391","https://openalex.org/W2042188227","https://openalex.org/W2046747418","https://openalex.org/W2064675550","https://openalex.org/W2079735306","https://openalex.org/W2095705004","https://openalex.org/W2096765155","https://openalex.org/W2101609803","https://openalex.org/W2107878631","https://openalex.org/W2110485445","https://openalex.org/W2125097277","https://openalex.org/W2135192531","https://openalex.org/W2158899491","https://openalex.org/W2162461580","https://openalex.org/W2184865040","https://openalex.org/W2192572088","https://openalex.org/W2250713895","https://openalex.org/W2251235442","https://openalex.org/W2296283641","https://openalex.org/W2577520420","https://openalex.org/W2952230511","https://openalex.org/W2962902328","https://openalex.org/W2963428321","https://openalex.org/W2963682821","https://openalex.org/W6674330103","https://openalex.org/W6683738474"],"related_works":["https://openalex.org/W4250494529","https://openalex.org/W1964783010","https://openalex.org/W2399696375","https://openalex.org/W45206245","https://openalex.org/W2211396092","https://openalex.org/W2061834489","https://openalex.org/W3088215229","https://openalex.org/W2078793151","https://openalex.org/W3047727388","https://openalex.org/W2759598007"],"abstract_inverted_index":{"Drug-Named":[0],"Entity":[1],"Recognition":[2],"(DNER)":[3],"for":[4],"biomedical":[5],"literature":[6],"is":[7,92],"a":[8,63,95],"fundamental":[9],"facilitator":[10],"of":[11,30,81,98,108,121],"Information":[12],"Extraction.":[13],"For":[14],"this":[15,87],"reason,":[16],"the":[17,113,119,122,129,133],"DDIExtraction2011":[18],"(DDI2011)":[19],"and":[20,41,49,58,100,115],"DDIExtraction2013":[21],"(DDI2013)":[22],"challenge":[23],"introduced":[24],"one":[25],"task":[26],"aiming":[27],"at":[28],"recognition":[29],"drug":[31],"names.":[32],"State-of-the-art":[33],"DNER":[34],"approaches":[35],"heavily":[36],"rely":[37],"on":[38,112],"hand-engineered":[39],"features":[40,61],"domain-specific":[42],"knowledge":[43],"which":[44,91,103],"are":[45,84],"difficult":[46],"to":[47],"collect":[48],"define.":[50],"Therefore,":[51],"we":[52],"offer":[53],"an":[54],"automatic":[55],"exploring":[56],"words":[57],"characters":[59],"level":[60],"approach:":[62],"recurrent":[64],"neural":[65],"network":[66],"using":[67],"bidirectional":[68],"long":[69],"short-term":[70],"memory":[71],"(LSTM)":[72],"with":[73],"Conditional":[74],"Random":[75],"Fields":[76],"decoding":[77],"(LSTM-CRF).":[78],"Two":[79],"kinds":[80],"word":[82,89],"representations":[83],"used":[85],"in":[86,132],"work:":[88],"embedding,":[90],"trained":[93],"from":[94],"large":[96],"amount":[97],"text,":[99],"character-based":[101],"representation,":[102],"can":[104],"capture":[105],"orthographic":[106],"feature":[107],"words.":[109],"Experimental":[110],"results":[111],"DDI2011":[114],"DDI2013":[116,134],"dataset":[117],"show":[118],"effect":[120],"proposed":[123],"LSTM-CRF":[124],"method.":[125],"Our":[126],"method":[127],"outperforms":[128],"best":[130],"system":[131],"challenge.":[135]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":16},{"year":2019,"cited_by_count":20},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2017-06-23T00:00:00"}
