{"id":"https://openalex.org/W2607474778","doi":"https://doi.org/10.3390/e19040167","title":"Application of the Fuzzy Oil Drop Model Describes Amyloid as a Ribbonlike Micelle","display_name":"Application of the Fuzzy Oil Drop Model Describes Amyloid as a Ribbonlike Micelle","publication_year":2017,"publication_date":"2017-04-14","ids":{"openalex":"https://openalex.org/W2607474778","doi":"https://doi.org/10.3390/e19040167","mag":"2607474778"},"language":"en","primary_location":{"id":"doi:10.3390/e19040167","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e19040167","pdf_url":"https://www.mdpi.com/1099-4300/19/4/167/pdf?version=1492174301","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/19/4/167/pdf?version=1492174301","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087239926","display_name":"Irena Roterman","orcid":"https://orcid.org/0000-0003-3652-9099"},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Irena Roterman","raw_affiliation_strings":["Department of Bioinformatics and Telemedicine, Collegium Medium, Jagiellonian University, Lazarza 16, 31-530 Krakow, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Telemedicine, Collegium Medium, Jagiellonian University, Lazarza 16, 31-530 Krakow, Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068559370","display_name":"Mateusz Banach","orcid":"https://orcid.org/0000-0003-1806-9877"},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Mateusz Banach","raw_affiliation_strings":["Department of Bioinformatics and Telemedicine, Collegium Medium, Jagiellonian University, Lazarza 16, 31-530 Krakow, Poland"],"raw_orcid":"https://orcid.org/0000-0003-1806-9877","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Telemedicine, Collegium Medium, Jagiellonian University, Lazarza 16, 31-530 Krakow, Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027144155","display_name":"Leszek Konieczny","orcid":null},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Leszek Konieczny","raw_affiliation_strings":["Chair of Medical Biochemistry, Collegium Medicum, Jagiellonian University, Kopernika 7, 31-034 Krakow, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair of Medical Biochemistry, Collegium Medicum, Jagiellonian University, Kopernika 7, 31-034 Krakow, Poland","institution_ids":["https://openalex.org/I126596746"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5087239926"],"corresponding_institution_ids":["https://openalex.org/I126596746"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":2.58,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.9023175,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"19","issue":"4","first_page":"167","last_page":"167"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11335","display_name":"Prion Diseases and Protein Misfolding","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11335","display_name":"Prion Diseases and Protein Misfolding","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10086","display_name":"Alzheimer's disease research and treatments","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10411","display_name":"Proteins in Food Systems","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/micelle","display_name":"Micelle","score":0.586475670337677},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.5435365438461304},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.5311590433120728},{"id":"https://openalex.org/keywords/drop","display_name":"Drop (telecommunication)","score":0.4861392676830292},{"id":"https://openalex.org/keywords/amyloid-fibril","display_name":"Amyloid fibril","score":0.4638630747795105},{"id":"https://openalex.org/keywords/globular-protein","display_name":"Globular protein","score":0.4157179594039917},{"id":"https://openalex.org/keywords/mechanics","display_name":"Mechanics","score":0.38754093647003174},{"id":"https://openalex.org/keywords/chemical-physics","display_name":"Chemical physics","score":0.37232980132102966},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.35097646713256836},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.31766003370285034},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2755647301673889},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.19513538479804993},{"id":"https://openalex.org/keywords/nuclear-magnetic-resonance","display_name":"Nuclear magnetic resonance","score":0.15264761447906494},{"id":"https://openalex.org/keywords/amyloid-\u03b2","display_name":"Amyloid \u03b2","score":0.10232222080230713},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.10127925872802734},{"id":"https://openalex.org/keywords/aqueous-solution","display_name":"Aqueous solution","score":0.09848734736442566}],"concepts":[{"id":"https://openalex.org/C11268172","wikidata":"https://www.wikidata.org/wiki/Q421110","display_name":"Micelle","level":3,"score":0.586475670337677},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.5435365438461304},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.5311590433120728},{"id":"https://openalex.org/C2781345722","wikidata":"https://www.wikidata.org/wiki/Q5308388","display_name":"Drop (telecommunication)","level":2,"score":0.4861392676830292},{"id":"https://openalex.org/C2994168385","wikidata":"https://www.wikidata.org/wiki/Q6740853","display_name":"Amyloid fibril","level":4,"score":0.4638630747795105},{"id":"https://openalex.org/C105168689","wikidata":"https://www.wikidata.org/wiki/Q901969","display_name":"Globular protein","level":2,"score":0.4157179594039917},{"id":"https://openalex.org/C57879066","wikidata":"https://www.wikidata.org/wiki/Q41217","display_name":"Mechanics","level":1,"score":0.38754093647003174},{"id":"https://openalex.org/C159467904","wikidata":"https://www.wikidata.org/wiki/Q2001702","display_name":"Chemical physics","level":1,"score":0.37232980132102966},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.35097646713256836},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.31766003370285034},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2755647301673889},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.19513538479804993},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.15264761447906494},{"id":"https://openalex.org/C3019447875","wikidata":"https://www.wikidata.org/wiki/Q417667","display_name":"Amyloid \u03b2","level":3,"score":0.10232222080230713},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.10127925872802734},{"id":"https://openalex.org/C184651966","wikidata":"https://www.wikidata.org/wiki/Q906356","display_name":"Aqueous solution","level":2,"score":0.09848734736442566},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3390/e19040167","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e19040167","pdf_url":"https://www.mdpi.com/1099-4300/19/4/167/pdf?version=1492174301","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmh:oai:ruj.uj.edu.pl:item/140323","is_oa":true,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/140323","pdf_url":null,"source":{"id":"https://openalex.org/S4306401249","display_name":"Jagiellonian University Repository (Jagiellonian University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126596746","host_organization_name":"Jagiellonian University","host_organization_lineage":["https://openalex.org/I126596746"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:mdpi.com:/1099-4300/19/4/167/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/e19040167","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy; Volume 19; Issue 4; Pages: 167","raw_type":"Text"},{"id":"pmh:oai:ruj.uj.edu.pl:item/103475","is_oa":false,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/103475","pdf_url":null,"source":{"id":"https://openalex.org/S4306400316","display_name":"Homo Politicus (Academy of Humanities and Economics in Lodz)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"artyku\u0142 w czasopi\u015bmie"},{"id":"pmh:oai:ruj.uj.edu.pl:item/128709","is_oa":true,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/128709","pdf_url":null,"source":{"id":"https://openalex.org/S4306401249","display_name":"Jagiellonian University Repository (Jagiellonian University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126596746","host_organization_name":"Jagiellonian University","host_organization_lineage":["https://openalex.org/I126596746"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.3390/e19040167","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e19040167","pdf_url":"https://www.mdpi.com/1099-4300/19/4/167/pdf?version=1492174301","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.800000011920929,"display_name":"Clean water and sanitation","id":"https://metadata.un.org/sdg/6"}],"awards":[{"id":"https://openalex.org/G7264336798","display_name":null,"funder_award_id":"K/ZDS/006363","funder_id":"https://openalex.org/F4320310970","funder_display_name":"Uniwersytet Jagiello\u0144ski Collegium Medicum"}],"funders":[{"id":"https://openalex.org/F4320310970","display_name":"Uniwersytet Jagiello\u0144ski Collegium Medicum","ror":"https://ror.org/03bqmcz70"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2607474778.pdf"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W113688923","https://openalex.org/W1497394985","https://openalex.org/W1552393652","https://openalex.org/W1935356375","https://openalex.org/W1961186421","https://openalex.org/W1965555277","https://openalex.org/W1965649683","https://openalex.org/W1966743338","https://openalex.org/W1971054145","https://openalex.org/W1975798725","https://openalex.org/W1976007673","https://openalex.org/W1982797857","https://openalex.org/W1988760238","https://openalex.org/W2001014276","https://openalex.org/W2005210618","https://openalex.org/W2006528692","https://openalex.org/W2009856381","https://openalex.org/W2013679718","https://openalex.org/W2016785081","https://openalex.org/W2034967903","https://openalex.org/W2036882395","https://openalex.org/W2042036635","https://openalex.org/W2061301953","https://openalex.org/W2061762615","https://openalex.org/W2071490247","https://openalex.org/W2079256756","https://openalex.org/W2085807764","https://openalex.org/W2087578992","https://openalex.org/W2110461335","https://openalex.org/W2115474290","https://openalex.org/W2125346686","https://openalex.org/W2136086640","https://openalex.org/W2145516262","https://openalex.org/W2149638691","https://openalex.org/W2154063883","https://openalex.org/W2154721456","https://openalex.org/W2155143852","https://openalex.org/W2155537965","https://openalex.org/W2156954132","https://openalex.org/W2163210644","https://openalex.org/W2279165157","https://openalex.org/W2294469795","https://openalex.org/W2295354305","https://openalex.org/W2296400318","https://openalex.org/W2299106188","https://openalex.org/W2300875869","https://openalex.org/W2315326227","https://openalex.org/W2327382463","https://openalex.org/W2412858086","https://openalex.org/W2471955218","https://openalex.org/W2519805918","https://openalex.org/W2525612823","https://openalex.org/W2529164915","https://openalex.org/W2533198818","https://openalex.org/W2555151293","https://openalex.org/W4211239749","https://openalex.org/W6604582531","https://openalex.org/W6682929528","https://openalex.org/W7073825731"],"related_works":["https://openalex.org/W2911658066","https://openalex.org/W2068883282","https://openalex.org/W2917676741","https://openalex.org/W3134219308","https://openalex.org/W2358509092","https://openalex.org/W2587614612","https://openalex.org/W2146555725","https://openalex.org/W1976917189","https://openalex.org/W2034848477","https://openalex.org/W1976103641"],"abstract_inverted_index":{"We":[0],"propose":[1],"a":[2,35,58,75],"mathematical":[3],"model":[4,79,101],"describing":[5],"the":[6,27,38,44,50,67,90,104],"formation":[7],"of":[8,40,46,69,77,92,106],"micellar":[9],"forms\u2014whether":[10],"spherical,":[11],"globular,":[12,84],"cylindrical,":[13,85],"or":[14],"ribbonlike\u2014as":[15],"well":[16],"as":[17],"its":[18,70],"adaptation":[19],"to":[20,74,83,98],"protein":[21,93],"structure.":[22],"Our":[23],"model,":[24],"based":[25],"on":[26],"fuzzy":[28],"oil":[29],"drop":[30],"paradigm,":[31],"assumes":[32],"that":[33],"in":[34],"spherical":[36],"micelle":[37],"distribution":[39],"hydrophobicity":[41],"produced":[42],"by":[43,57,65],"alignment":[45],"polar":[47],"molecules":[48],"with":[49],"external":[51],"water":[52],"environment":[53],"can":[54,102],"be":[55],"modeled":[56],"3D":[59],"Gaussian":[60],"function.":[61],"Perturbing":[62],"this":[63],"function":[64],"changing":[66],"values":[68],"sigma":[71],"parameters":[72],"leads":[73],"variety":[76],"conformations\u2014the":[78],"is":[80],"therefore":[81],"applicable":[82],"and":[86],"ribbonlike":[87],"micelles.":[88],"In":[89],"context":[91],"structures":[94],"ranging":[95],"from":[96],"globular":[97],"ribbonlike,":[99],"our":[100],"explain":[103],"emergence":[105],"fibrillar":[107],"forms;":[108],"particularly":[109],"amyloids.":[110]},"counts_by_year":[{"year":2021,"cited_by_count":3},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":3}],"updated_date":"2026-06-22T08:00:12.763002","created_date":"2017-04-28T00:00:00"}