{"id":"https://openalex.org/W2564543794","doi":"https://doi.org/10.3390/e18120445","title":"Multivariate Surprisal Analysis of Gene Expression Levels","display_name":"Multivariate Surprisal Analysis of Gene Expression Levels","publication_year":2016,"publication_date":"2016-12-11","ids":{"openalex":"https://openalex.org/W2564543794","doi":"https://doi.org/10.3390/e18120445","mag":"2564543794"},"language":"en","primary_location":{"id":"doi:10.3390/e18120445","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e18120445","pdf_url":"https://www.mdpi.com/1099-4300/18/12/445/pdf?version=1481541382","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/18/12/445/pdf?version=1481541382","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030971101","display_name":"F. Remacle","orcid":"https://orcid.org/0000-0001-7434-5245"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]},{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]}],"countries":["BE","IL"],"is_corresponding":false,"raw_author_name":"Francoise Remacle","raw_affiliation_strings":["D\u00e9partement de Chimie, B6c, Universit\u00e9 de Li\u00e8ge, B4000 Li\u00e8ge, Belgium","The Fritz Haber Research Center for Molecular Dynamics, The Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"D\u00e9partement de Chimie, B6c, Universit\u00e9 de Li\u00e8ge, B4000 Li\u00e8ge, Belgium","institution_ids":["https://openalex.org/I157674565"]},{"raw_affiliation_string":"The Fritz Haber Research Center for Molecular Dynamics, The Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel","institution_ids":["https://openalex.org/I197251160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091314004","display_name":"Andrew S. Goldstein","orcid":"https://orcid.org/0000-0003-0434-9149"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Goldstein","raw_affiliation_strings":["Department of Urology, David Geffen School of Medicine and Department of Molecular Cell &amp; Developmental Biology, University of California, Los Angeles, CA 90095, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Urology, David Geffen School of Medicine and Department of Molecular Cell &amp; Developmental Biology, University of California, Los Angeles, CA 90095, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076745493","display_name":"R. D. Levine","orcid":"https://orcid.org/0000-0002-1973-8449"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]},{"id":"https://openalex.org/I4210156620","display_name":"Institute for Molecular Medicine","ror":"https://ror.org/053k5y417","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210156620"]},{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL","US"],"is_corresponding":true,"raw_author_name":"Raphael Levine","raw_affiliation_strings":["Crump Institute for Molecular Imaging and Department of Molecular and Medical Pharmacology, David Geffen School of Medicine, and Department of Chemistry & Biochemistry, University of California, Los Angeles, CA 90095, USA","The Fritz Haber Research Center for Molecular Dynamics, The Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Crump Institute for Molecular Imaging and Department of Molecular and Medical Pharmacology, David Geffen School of Medicine, and Department of Chemistry & Biochemistry, University of California, Los Angeles, CA 90095, USA","institution_ids":["https://openalex.org/I4210156620","https://openalex.org/I161318765"]},{"raw_affiliation_string":"The Fritz Haber Research Center for Molecular Dynamics, The Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel","institution_ids":["https://openalex.org/I197251160"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5076745493"],"corresponding_institution_ids":["https://openalex.org/I161318765","https://openalex.org/I197251160","https://openalex.org/I4210156620"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":0.0,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.10166169,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"18","issue":"12","first_page":"445","last_page":"445"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multivariate-statistics","display_name":"Multivariate statistics","score":0.6225816607475281},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.5465072393417358},{"id":"https://openalex.org/keywords/multivariate-analysis","display_name":"Multivariate analysis","score":0.5214363932609558},{"id":"https://openalex.org/keywords/logarithmic-scale","display_name":"Logarithmic scale","score":0.49816250801086426},{"id":"https://openalex.org/keywords/entropy","display_name":"Entropy (arrow of time)","score":0.4821031391620636},{"id":"https://openalex.org/keywords/row","display_name":"Row","score":0.4484088122844696},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.4325469434261322},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3471243977546692},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.12572473287582397}],"concepts":[{"id":"https://openalex.org/C161584116","wikidata":"https://www.wikidata.org/wiki/Q1952580","display_name":"Multivariate statistics","level":2,"score":0.6225816607475281},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.5465072393417358},{"id":"https://openalex.org/C38180746","wikidata":"https://www.wikidata.org/wiki/Q1952580","display_name":"Multivariate analysis","level":2,"score":0.5214363932609558},{"id":"https://openalex.org/C139912040","wikidata":"https://www.wikidata.org/wiki/Q937378","display_name":"Logarithmic scale","level":2,"score":0.49816250801086426},{"id":"https://openalex.org/C106301342","wikidata":"https://www.wikidata.org/wiki/Q4117933","display_name":"Entropy (arrow of time)","level":2,"score":0.4821031391620636},{"id":"https://openalex.org/C135598885","wikidata":"https://www.wikidata.org/wiki/Q1366302","display_name":"Row","level":2,"score":0.4484088122844696},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.4325469434261322},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3471243977546692},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.12572473287582397},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3390/e18120445","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e18120445","pdf_url":"https://www.mdpi.com/1099-4300/18/12/445/pdf?version=1481541382","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:f872bf03af4f42e487269a83dbbcab3e","is_oa":true,"landing_page_url":"https://doaj.org/article/f872bf03af4f42e487269a83dbbcab3e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 18, Iss 12, p 445 (2016)","raw_type":"article"},{"id":"pmh:oai:orbi.ulg.ac.be:2268/212625","is_oa":true,"landing_page_url":"https://orbi.uliege.be/handle/2268/212625","pdf_url":null,"source":{"id":"https://openalex.org/S4306400651","display_name":"Open Repository and Bibliography (University of Li\u00e8ge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157674565","host_organization_name":"University of Li\u00e8ge","host_organization_lineage":["https://openalex.org/I157674565"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, 18 (12), 445 (2017)","raw_type":"peer reviewed"}],"best_oa_location":{"id":"doi:10.3390/e18120445","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e18120445","pdf_url":"https://www.mdpi.com/1099-4300/18/12/445/pdf?version=1481541382","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306163","display_name":"Prostate Cancer Foundation","ror":"https://ror.org/01npwtv09"},{"id":"https://openalex.org/F4320321390","display_name":"Fonds De La Recherche Scientifique - FNRS","ror":"https://ror.org/03q83t159"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2564543794.pdf","grobid_xml":"https://content.openalex.org/works/W2564543794.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1599969036","https://openalex.org/W1963826206","https://openalex.org/W1966031663","https://openalex.org/W1984270738","https://openalex.org/W1987677421","https://openalex.org/W1992077705","https://openalex.org/W1994396152","https://openalex.org/W2006333907","https://openalex.org/W2009888774","https://openalex.org/W2013912476","https://openalex.org/W2023396760","https://openalex.org/W2024165284","https://openalex.org/W2031058636","https://openalex.org/W2035931974","https://openalex.org/W2042940468","https://openalex.org/W2069771703","https://openalex.org/W2069893807","https://openalex.org/W2081394327","https://openalex.org/W2084585676","https://openalex.org/W2090432229","https://openalex.org/W2091142825","https://openalex.org/W2098935079","https://openalex.org/W2099388546","https://openalex.org/W2109363337","https://openalex.org/W2120077398","https://openalex.org/W2146700191","https://openalex.org/W2158217645","https://openalex.org/W2160879045","https://openalex.org/W2163296115","https://openalex.org/W2166106382","https://openalex.org/W2168346701","https://openalex.org/W2176599823","https://openalex.org/W2208729737","https://openalex.org/W2267675472","https://openalex.org/W2284763488","https://openalex.org/W2413157582","https://openalex.org/W2528271650","https://openalex.org/W3099289621","https://openalex.org/W6672941965","https://openalex.org/W6992744512"],"related_works":["https://openalex.org/W2406638334","https://openalex.org/W40745829","https://openalex.org/W1978357124","https://openalex.org/W1578824628","https://openalex.org/W2032728545","https://openalex.org/W1570805059","https://openalex.org/W4250754046","https://openalex.org/W4318262572","https://openalex.org/W2036849593","https://openalex.org/W1978174651"],"abstract_inverted_index":{"We":[0,77,151,203,233],"consider":[1],"here":[2,79],"multivariate":[3,110,164,259,320],"data":[4,13,31,52,99,111,171,314,332],"which":[5],"we":[6],"understand":[7],"as":[8,56,103,174,240,285],"the":[9,35,38,51,63,66,69,72,75,87,98,163,179,185,189,196,213,235,238,241,246,258,265,268,275,278,286,292,317,331,342],"problem":[10],"where":[11,60,178,330],"each":[12,149],"point":[14],"i":[15,33,61],"is":[16,41,46,62,117,172,299,333],"measured":[17,168],"for":[18,121,148,228],"two":[19,95,180,252,262,336],"or":[20],"more":[21,42,88],"distinct":[22],"variables.":[23],"In":[24],"a":[25,57,104,113,175,200,205,223,272,300],"typical":[26],"situation":[27],"there":[28,45,141],"are":[29,136,142,184,195,339],"many":[30],"points":[32],"while":[34,68],"range":[36],"of":[37,65,71,108,129,208,215,267,277,319],"different":[39,126,131,134,186,190],"variables":[40,96],"limited.":[43],"If":[44],"only":[47],"one":[48],"variable":[49,73],"then":[50,84],"can":[53,100],"be":[54,101,310],"arranged":[55],"rectangular":[58],"matrix":[59],"index":[64],"rows":[67],"values":[70],"label":[74],"columns.":[76],"begin":[78],"with":[80,91],"this":[81,324],"case,":[82],"but":[83],"proceed":[85],"to":[86,161,271,291,309,322],"general":[89],"case":[90],"special":[92],"emphasis":[93],"on":[94,199],"when":[97],"organized":[102,173],"tensor.":[105],"An":[106],"analysis":[107,221,321],"such":[109],"by":[112,138,145],"maximal":[114],"entropy":[115],"approach":[116,158],"discussed":[118],"and":[119,140,188,211,231,251,306],"illustrated":[120],"gene":[122],"expressions":[123],"in":[124,237,303],"four":[125],"cell":[127,191,247],"types":[128],"six":[130],"patients.":[132,219,232],"The":[133,167,193,249,261,280,327],"genes":[135,243],"indexed":[137],"i,":[139],"24":[143],"(4":[144],"6)":[146],"entries":[147,194],"i.":[150],"used":[152],"an":[153],"unbiased":[154],"thermodynamic":[155],"maximal-entropy":[156],"based":[157],"(surprisal":[159],"analysis)":[160],"analyze":[162],"transcriptional":[165],"profiles.":[166],"microarray":[169],"experimental":[170],"tensor":[176],"array":[177],"minor":[181],"orthogonal":[182],"directions":[183],"patients":[187,269],"types.":[192],"transcription":[197],"levels":[198],"logarithmic":[201],"scale.":[202],"identify":[204,234],"disease":[206,294],"signature":[207],"prostate":[209],"cancer":[210,293],"determine":[212],"degree":[214],"variability":[216,298],"between":[217],"individual":[218],"Surprisal":[220],"determined":[222],"baseline":[224,239,250],"expression":[225],"level":[226],"common":[227],"all":[229],"cells":[230],"transcripts":[236],"\u201chousekeeping\u201d":[242],"that":[244],"insure":[245],"stability.":[248],"surprisal":[253],"patterns":[254,263],"satisfactorily":[255],"recover":[256],"(99.8%)":[257],"data.":[260],"characterize":[264],"individuality":[266],"and,":[270],"lesser":[273],"extent,":[274],"commonality":[276],"disease.":[279],"immune":[281],"response":[282],"was":[283],"identified":[284],"most":[287],"significant":[288],"pathway":[289],"contributing":[290],"pattern.":[295],"Delineating":[296],"patient":[297],"central":[301],"issue":[302],"personalized":[304],"diagnostics":[305],"it":[307],"remains":[308],"seen":[311],"if":[312],"additional":[313],"will":[315],"confirm":[316],"power":[318],"address":[323],"key":[325],"point.":[326],"collapsed":[328],"limits":[329],"compacted":[334],"into":[335],"dimensional":[337],"arrays":[338],"contained":[340],"within":[341],"proposed":[343],"formalism.":[344]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
