{"id":"https://openalex.org/W2525612823","doi":"https://doi.org/10.3390/e18100351","title":"Influence of the Aqueous Environment on Protein Structure\u2014A Plausible Hypothesis Concerning the Mechanism of Amyloidogenesis","display_name":"Influence of the Aqueous Environment on Protein Structure\u2014A Plausible Hypothesis Concerning the Mechanism of Amyloidogenesis","publication_year":2016,"publication_date":"2016-09-28","ids":{"openalex":"https://openalex.org/W2525612823","doi":"https://doi.org/10.3390/e18100351","mag":"2525612823"},"language":"en","primary_location":{"id":"doi:10.3390/e18100351","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e18100351","pdf_url":"https://www.mdpi.com/1099-4300/18/10/351/pdf?version=1475059407","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/18/10/351/pdf?version=1475059407","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087239926","display_name":"Irena Roterman","orcid":"https://orcid.org/0000-0003-3652-9099"},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Irena Roterman","raw_affiliation_strings":["Department of Bioinformatics and Telemedicine, Collegium Medium, Jagiellonian University, Lazarza 16, 31-530 Krakow, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Telemedicine, Collegium Medium, Jagiellonian University, Lazarza 16, 31-530 Krakow, Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068559370","display_name":"Mateusz Banach","orcid":"https://orcid.org/0000-0003-1806-9877"},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Mateusz Banach","raw_affiliation_strings":["Department of Bioinformatics and Telemedicine, Collegium Medium, Jagiellonian University, Lazarza 16, 31-530 Krakow, Poland"],"raw_orcid":"https://orcid.org/0000-0003-1806-9877","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Telemedicine, Collegium Medium, Jagiellonian University, Lazarza 16, 31-530 Krakow, Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007069015","display_name":"Barbara Kalinowska","orcid":null},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Barbara Kalinowska","raw_affiliation_strings":["Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, 30-059 Krakow, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, 30-059 Krakow, Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027144155","display_name":"Leszek Konieczny","orcid":null},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Leszek Konieczny","raw_affiliation_strings":["Chair of Medical Biochemistry, Collegium Medicum, Jagiellonian University, Kopernika 7, 31-034 Krakow, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair of Medical Biochemistry, Collegium Medicum, Jagiellonian University, Kopernika 7, 31-034 Krakow, Poland","institution_ids":["https://openalex.org/I126596746"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5087239926"],"corresponding_institution_ids":["https://openalex.org/I126596746"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":4.1492,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.94201922,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"18","issue":"10","first_page":"351","last_page":"351"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10086","display_name":"Alzheimer's disease research and treatments","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10086","display_name":"Alzheimer's disease research and treatments","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10617","display_name":"Cellular transport and secretion","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.6293424367904663},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.5520758628845215},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.5514963865280151},{"id":"https://openalex.org/keywords/titin","display_name":"Titin","score":0.5460713505744934},{"id":"https://openalex.org/keywords/aqueous-solution","display_name":"Aqueous solution","score":0.5139031410217285},{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.49837613105773926},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4677804708480835},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.45672541856765747},{"id":"https://openalex.org/keywords/transthyretin","display_name":"Transthyretin","score":0.4215860068798065},{"id":"https://openalex.org/keywords/fibril","display_name":"Fibril","score":0.4173821210861206},{"id":"https://openalex.org/keywords/amyloid-fibril","display_name":"Amyloid fibril","score":0.4149879813194275},{"id":"https://openalex.org/keywords/chemical-physics","display_name":"Chemical physics","score":0.3842417895793915},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2549791932106018},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.20757341384887695},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.197519451379776},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.13848841190338135},{"id":"https://openalex.org/keywords/amyloid-\u03b2","display_name":"Amyloid \u03b2","score":0.1112859845161438},{"id":"https://openalex.org/keywords/physical-chemistry","display_name":"Physical chemistry","score":0.0860525369644165}],"concepts":[{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.6293424367904663},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5520758628845215},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.5514963865280151},{"id":"https://openalex.org/C90671521","wikidata":"https://www.wikidata.org/wiki/Q74314","display_name":"Titin","level":4,"score":0.5460713505744934},{"id":"https://openalex.org/C184651966","wikidata":"https://www.wikidata.org/wiki/Q906356","display_name":"Aqueous solution","level":2,"score":0.5139031410217285},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.49837613105773926},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4677804708480835},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.45672541856765747},{"id":"https://openalex.org/C121157162","wikidata":"https://www.wikidata.org/wiki/Q419999","display_name":"Transthyretin","level":2,"score":0.4215860068798065},{"id":"https://openalex.org/C27523624","wikidata":"https://www.wikidata.org/wiki/Q14860849","display_name":"Fibril","level":2,"score":0.4173821210861206},{"id":"https://openalex.org/C2994168385","wikidata":"https://www.wikidata.org/wiki/Q6740853","display_name":"Amyloid fibril","level":4,"score":0.4149879813194275},{"id":"https://openalex.org/C159467904","wikidata":"https://www.wikidata.org/wiki/Q2001702","display_name":"Chemical physics","level":1,"score":0.3842417895793915},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2549791932106018},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.20757341384887695},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.197519451379776},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.13848841190338135},{"id":"https://openalex.org/C3019447875","wikidata":"https://www.wikidata.org/wiki/Q417667","display_name":"Amyloid \u03b2","level":3,"score":0.1112859845161438},{"id":"https://openalex.org/C147789679","wikidata":"https://www.wikidata.org/wiki/Q11372","display_name":"Physical chemistry","level":1,"score":0.0860525369644165},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C134018914","wikidata":"https://www.wikidata.org/wiki/Q162606","display_name":"Endocrinology","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C207200792","wikidata":"https://www.wikidata.org/wiki/Q428914","display_name":"Myocyte","level":2,"score":0.0},{"id":"https://openalex.org/C68731436","wikidata":"https://www.wikidata.org/wiki/Q1337087","display_name":"Sarcomere","level":3,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3390/e18100351","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e18100351","pdf_url":"https://www.mdpi.com/1099-4300/18/10/351/pdf?version=1475059407","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmh:oai:ruj.uj.edu.pl:item/34602","is_oa":true,"landing_page_url":"http://ruj.uj.edu.pl/xmlui/handle/item/34602","pdf_url":null,"source":{"id":"https://openalex.org/S4306400316","display_name":"Homo Politicus (Academy of Humanities and Economics in Lodz)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"artyku\u0142 w czasopi\u015bmie"},{"id":"pmh:oai:doaj.org/article:404324c03a5542eb958bc597f0a9fa2f","is_oa":true,"landing_page_url":"https://doaj.org/article/404324c03a5542eb958bc597f0a9fa2f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 18, Iss 10, p 351 (2016)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/1099-4300/18/10/351/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/e18100351","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy; Volume 18; Issue 10; Pages: 351","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/e18100351","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e18100351","pdf_url":"https://www.mdpi.com/1099-4300/18/10/351/pdf?version=1475059407","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7900000214576721,"id":"https://metadata.un.org/sdg/6","display_name":"Clean water and sanitation"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":82,"referenced_works":["https://openalex.org/W157808733","https://openalex.org/W175377976","https://openalex.org/W216878207","https://openalex.org/W258682204","https://openalex.org/W1779994739","https://openalex.org/W1961186421","https://openalex.org/W1965555277","https://openalex.org/W1975798725","https://openalex.org/W1977250687","https://openalex.org/W1986326261","https://openalex.org/W1988333572","https://openalex.org/W1993139876","https://openalex.org/W1998490996","https://openalex.org/W2001014276","https://openalex.org/W2009850071","https://openalex.org/W2014050554","https://openalex.org/W2016785081","https://openalex.org/W2017422947","https://openalex.org/W2018459217","https://openalex.org/W2034410412","https://openalex.org/W2055775253","https://openalex.org/W2056390885","https://openalex.org/W2061762615","https://openalex.org/W2064367582","https://openalex.org/W2065407080","https://openalex.org/W2072613948","https://openalex.org/W2077808902","https://openalex.org/W2080519444","https://openalex.org/W2081855136","https://openalex.org/W2082356624","https://openalex.org/W2085807764","https://openalex.org/W2086077175","https://openalex.org/W2088844185","https://openalex.org/W2090460767","https://openalex.org/W2105738898","https://openalex.org/W2106010460","https://openalex.org/W2107919599","https://openalex.org/W2109801072","https://openalex.org/W2110318177","https://openalex.org/W2111951761","https://openalex.org/W2114441129","https://openalex.org/W2114981306","https://openalex.org/W2120434191","https://openalex.org/W2122294662","https://openalex.org/W2127642254","https://openalex.org/W2133762037","https://openalex.org/W2136086640","https://openalex.org/W2138768135","https://openalex.org/W2139216078","https://openalex.org/W2140655692","https://openalex.org/W2150991944","https://openalex.org/W2154063883","https://openalex.org/W2154721456","https://openalex.org/W2156954132","https://openalex.org/W2169280166","https://openalex.org/W2188931003","https://openalex.org/W2242664669","https://openalex.org/W2266690651","https://openalex.org/W2282801158","https://openalex.org/W2301267654","https://openalex.org/W2345152378","https://openalex.org/W2354443732","https://openalex.org/W2378845778","https://openalex.org/W2384171469","https://openalex.org/W2402276976","https://openalex.org/W2409049757","https://openalex.org/W2419578831","https://openalex.org/W2440352217","https://openalex.org/W2444168455","https://openalex.org/W2464369392","https://openalex.org/W2467899972","https://openalex.org/W2473342350","https://openalex.org/W2474977510","https://openalex.org/W2483986173","https://openalex.org/W2487621616","https://openalex.org/W2487730443","https://openalex.org/W2498015521","https://openalex.org/W2498795028","https://openalex.org/W2501424458","https://openalex.org/W2504765186","https://openalex.org/W2517793347","https://openalex.org/W4240895940"],"related_works":["https://openalex.org/W2026214162","https://openalex.org/W4386665141","https://openalex.org/W2611005065","https://openalex.org/W2026727765","https://openalex.org/W2002445379","https://openalex.org/W1544926311","https://openalex.org/W2586344792","https://openalex.org/W2084102110","https://openalex.org/W2015149843","https://openalex.org/W2442596115"],"abstract_inverted_index":{"The":[0,65],"aqueous":[1,74],"environment":[2,75],"is":[3,42,90],"a":[4,104,134],"pervasive":[5],"factor":[6],"which,":[7],"in":[8,31],"many":[9],"ways,":[10],"determines":[11],"the":[12,18,45,67,73,93,101,111,145],"protein":[13,84],"folding":[14],"process":[15],"and":[16,86,107,133],"consequently":[17],"activity":[19],"of":[20,47,70,103,113,118,148],"proteins.":[21],"Proteins":[22],"are":[23],"unable":[24],"to":[25,109,124,143],"perform":[26],"their":[27,125],"function":[28],"unless":[29],"immersed":[30],"water":[32,71],"(membrane":[33],"proteins":[34,119],"excluded":[35],"from":[36],"this":[37],"statement).":[38],"Tertiary":[39],"conformational":[40],"stabilization":[41],"dependent":[43],"on":[44,83,92],"presence":[46],"internal":[48],"force":[49,60],"fields":[50],"(nonbonding":[51],"interactions":[52],"between":[53],"atoms),":[54],"as":[55,57,72],"well":[56],"an":[58],"external":[59],"field":[61],"generated":[62],"by":[63,79],"water.":[64],"hitherto":[66],"unknown":[68],"structuralization":[69],"may":[76],"be":[77],"elucidated":[78],"analyzing":[80],"its":[81],"effects":[82],"structure":[85],"function.":[87],"Our":[88],"study":[89],"based":[91],"fuzzy":[94,126],"oil":[95,127],"drop":[96,128],"model\u2014a":[97],"mechanism":[98,147],"which":[99,120],"describes":[100],"formation":[102],"hydrophobic":[105],"core":[106],"attempts":[108],"explain":[110],"emergence":[112],"amyloid-like":[114],"fibrils.":[115],"A":[116],"set":[117],"vary":[121],"with":[122],"respect":[123],"status":[129],"(including":[130],"titin,":[131],"transthyretin":[132],"prion":[135],"protein)":[136],"have":[137],"been":[138],"selected":[139],"for":[140],"in-depth":[141],"analysis":[142],"suggest":[144],"plausible":[146],"amyloidogenesis.":[149]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2016-10-07T00:00:00"}
