{"id":"https://openalex.org/W1966452896","doi":"https://doi.org/10.3390/e12010034","title":"Data Compression Concepts and Algorithms and Their Applications to Bioinformatics","display_name":"Data Compression Concepts and Algorithms and Their Applications to Bioinformatics","publication_year":2009,"publication_date":"2009-12-29","ids":{"openalex":"https://openalex.org/W1966452896","doi":"https://doi.org/10.3390/e12010034","mag":"1966452896","pmid":"https://pubmed.ncbi.nlm.nih.gov/20157640"},"language":"en","primary_location":{"id":"doi:10.3390/e12010034","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e12010034","pdf_url":"https://www.mdpi.com/1099-4300/12/1/34/pdf?version=1424784676","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/12/1/34/pdf?version=1424784676","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027892983","display_name":"\u00d6zkan Ufuk Nalbanto\u011flu","orcid":"https://orcid.org/0000-0002-2278-7786"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"\u00d6zkan  U. Nalbantoglu","raw_affiliation_strings":["Department of Electrical Engineering, University of Nebraska-Lincoln, NE 68588-0511, USA","Department of Electrical Engineering, University of Nebraska - Lincoln, NE 68588-0511, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, University of Nebraska-Lincoln, NE 68588-0511, USA","institution_ids":["https://openalex.org/I114395901"]},{"raw_affiliation_string":"Department of Electrical Engineering, University of Nebraska - Lincoln, NE 68588-0511, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051196368","display_name":"David J. Russell","orcid":null},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David  J. Russell","raw_affiliation_strings":["Department of Electrical Engineering, University of Nebraska-Lincoln, NE 68588-0511, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, University of Nebraska-Lincoln, NE 68588-0511, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042195176","display_name":"Khalid Sayood","orcid":"https://orcid.org/0000-0001-8010-5272"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Khalid Sayood","raw_affiliation_strings":["Department of Electrical Engineering, University of Nebraska-Lincoln, NE 68588-0511, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, University of Nebraska-Lincoln, NE 68588-0511, USA","institution_ids":["https://openalex.org/I114395901"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5042195176"],"corresponding_institution_ids":["https://openalex.org/I114395901"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":1.0955,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.75587602,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"12","issue":"1","first_page":"34","last_page":"52"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6660811901092529},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.633362889289856},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5596842169761658},{"id":"https://openalex.org/keywords/entropy","display_name":"Entropy (arrow of time)","score":0.5359528660774231},{"id":"https://openalex.org/keywords/information-theory","display_name":"Information theory","score":0.5218440890312195},{"id":"https://openalex.org/keywords/mutual-information","display_name":"Mutual information","score":0.5065203905105591},{"id":"https://openalex.org/keywords/rule-based-machine-translation","display_name":"Rule-based machine translation","score":0.5012595653533936},{"id":"https://openalex.org/keywords/compression","display_name":"Compression (physics)","score":0.43867412209510803},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4344465434551239},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.423669695854187},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3966342806816101},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.28362131118774414},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.24237984418869019},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2113434076309204},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13115352392196655}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6660811901092529},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.633362889289856},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5596842169761658},{"id":"https://openalex.org/C106301342","wikidata":"https://www.wikidata.org/wiki/Q4117933","display_name":"Entropy (arrow of time)","level":2,"score":0.5359528660774231},{"id":"https://openalex.org/C52622258","wikidata":"https://www.wikidata.org/wiki/Q131222","display_name":"Information theory","level":2,"score":0.5218440890312195},{"id":"https://openalex.org/C152139883","wikidata":"https://www.wikidata.org/wiki/Q252973","display_name":"Mutual information","level":2,"score":0.5065203905105591},{"id":"https://openalex.org/C53893814","wikidata":"https://www.wikidata.org/wiki/Q7378909","display_name":"Rule-based machine translation","level":2,"score":0.5012595653533936},{"id":"https://openalex.org/C180016635","wikidata":"https://www.wikidata.org/wiki/Q2712821","display_name":"Compression (physics)","level":2,"score":0.43867412209510803},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4344465434551239},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.423669695854187},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3966342806816101},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28362131118774414},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.24237984418869019},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2113434076309204},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13115352392196655},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.3390/e12010034","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e12010034","pdf_url":"https://www.mdpi.com/1099-4300/12/1/34/pdf?version=1424784676","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmid:20157640","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20157640","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy (Basel, Switzerland)","raw_type":null},{"id":"pmh:oai:digitalcommons.unl.edu:electricalengineeringfacpub-1375","is_oa":true,"landing_page_url":"https://digitalcommons.unl.edu/electricalengineeringfacpub/381","pdf_url":null,"source":{"id":"https://openalex.org/S4306400577","display_name":"Lincoln (University of Nebraska)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114395901","host_organization_name":"University of Nebraska\u2013Lincoln","host_organization_lineage":["https://openalex.org/I114395901"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Department of Electrical and Computer Engineering: Faculty Publications","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:78edd3c5853b4cdc996ad1793bddaaac","is_oa":true,"landing_page_url":"https://doaj.org/article/78edd3c5853b4cdc996ad1793bddaaac","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 12, Iss 1, Pp 34-52 (2009)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/1099-4300/12/1/34/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/e12010034","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy; Volume 12; Issue 1; Pages: 34-52","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2821113","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2821113","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy (Basel)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/e12010034","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e12010034","pdf_url":"https://www.mdpi.com/1099-4300/12/1/34/pdf?version=1424784676","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3535581782","display_name":null,"funder_award_id":"K25 AI068151","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"}],"funders":[{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":101,"referenced_works":["https://openalex.org/W13187066","https://openalex.org/W25163855","https://openalex.org/W224821934","https://openalex.org/W616447529","https://openalex.org/W640907017","https://openalex.org/W1496422306","https://openalex.org/W1528514765","https://openalex.org/W1541535159","https://openalex.org/W1555082340","https://openalex.org/W1556472699","https://openalex.org/W1592870802","https://openalex.org/W1608182085","https://openalex.org/W1793314064","https://openalex.org/W1975924111","https://openalex.org/W1981689204","https://openalex.org/W1982850127","https://openalex.org/W1988178454","https://openalex.org/W1990362766","https://openalex.org/W1990442974","https://openalex.org/W1991864975","https://openalex.org/W1995875735","https://openalex.org/W2003060902","https://openalex.org/W2008386840","https://openalex.org/W2009570821","https://openalex.org/W2013138671","https://openalex.org/W2018371749","https://openalex.org/W2018993132","https://openalex.org/W2023206235","https://openalex.org/W2023346730","https://openalex.org/W2032214039","https://openalex.org/W2034140573","https://openalex.org/W2034183551","https://openalex.org/W2040713190","https://openalex.org/W2041877620","https://openalex.org/W2048283878","https://openalex.org/W2057960415","https://openalex.org/W2058302256","https://openalex.org/W2059864046","https://openalex.org/W2064345118","https://openalex.org/W2070097641","https://openalex.org/W2072994259","https://openalex.org/W2074703985","https://openalex.org/W2077770566","https://openalex.org/W2077983461","https://openalex.org/W2078149659","https://openalex.org/W2081411150","https://openalex.org/W2081947573","https://openalex.org/W2092113395","https://openalex.org/W2093205346","https://openalex.org/W2093588507","https://openalex.org/W2094773869","https://openalex.org/W2095502400","https://openalex.org/W2097132238","https://openalex.org/W2097413543","https://openalex.org/W2102471334","https://openalex.org/W2105686649","https://openalex.org/W2107745473","https://openalex.org/W2108278098","https://openalex.org/W2114737218","https://openalex.org/W2117825194","https://openalex.org/W2119309676","https://openalex.org/W2119804413","https://openalex.org/W2120149434","https://openalex.org/W2122962290","https://openalex.org/W2126450280","https://openalex.org/W2127912200","https://openalex.org/W2129942096","https://openalex.org/W2130956967","https://openalex.org/W2131510173","https://openalex.org/W2131848438","https://openalex.org/W2132603033","https://openalex.org/W2134383396","https://openalex.org/W2134814259","https://openalex.org/W2138531167","https://openalex.org/W2144221002","https://openalex.org/W2145026583","https://openalex.org/W2145494382","https://openalex.org/W2145567333","https://openalex.org/W2146028503","https://openalex.org/W2146951308","https://openalex.org/W2147492358","https://openalex.org/W2147697673","https://openalex.org/W2149492307","https://openalex.org/W2151554142","https://openalex.org/W2162471372","https://openalex.org/W2187526581","https://openalex.org/W2245993458","https://openalex.org/W2316603537","https://openalex.org/W2993383518","https://openalex.org/W2997317337","https://openalex.org/W4237708337","https://openalex.org/W4245668478","https://openalex.org/W4248165980","https://openalex.org/W6600516642","https://openalex.org/W6608794579","https://openalex.org/W6629764630","https://openalex.org/W6633339394","https://openalex.org/W6648982606","https://openalex.org/W6678772535","https://openalex.org/W6687112011","https://openalex.org/W6772162023"],"related_works":["https://openalex.org/W2920676536","https://openalex.org/W3124771927","https://openalex.org/W4225940264","https://openalex.org/W2750125254","https://openalex.org/W2057609120","https://openalex.org/W2889544313","https://openalex.org/W2111510771","https://openalex.org/W986037092","https://openalex.org/W2392704982","https://openalex.org/W4313429060"],"abstract_inverted_index":{"Data":[0],"compression":[1,50],"at":[2,61,104],"its":[3],"base":[4],"is":[5,10],"concerned":[6],"with":[7],"how":[8,62,105],"information":[9,25],"organized":[11],"in":[12,37,54,86,117],"data.":[13],"Understanding":[14],"this":[15,31],"organization":[16],"can":[17],"lead":[18],"to":[19,43,88,114],"efficient":[20],"ways":[21,36],"of":[22,48,57,73],"representing":[23],"the":[24,35,44,55,71],"and":[26,40,46,77,97],"hence":[27],"data":[28,49,67],"compression.":[29],"In":[30],"paper":[32],"we":[33,102],"review":[34],"which":[38],"ideas":[39,65],"approaches":[41],"fundamental":[42],"theory":[45],"practice":[47],"have":[51,79,111],"been":[52,80,112],"used":[53,81,113],"area":[56],"bioinformatics.":[58],"We":[59],"look":[60,103],"basic":[63],"theoretical":[64],"from":[66],"compression,":[68],"such":[69],"as":[70],"notions":[72],"entropy,":[74],"mutual":[75],"information,":[76],"complexity":[78],"for":[82,108],"analyzing":[83],"biological":[84,109,118],"sequences":[85,110],"order":[87],"discover":[89],"hidden":[90],"patterns,":[91],"infer":[92],"phylogenetic":[93],"relationships":[94],"between":[95],"organisms":[96],"study":[98],"viral":[99],"populations.":[100],"Finally,":[101],"inferred":[106],"grammars":[107],"uncover":[115],"structure":[116],"sequences.":[119]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":5}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2016-06-24T00:00:00"}
