{"id":"https://openalex.org/W2084587400","doi":"https://doi.org/10.3390/e11010062","title":"Structural Entropy to Characterize Small Proteins (70 aa) and Their Interactions","display_name":"Structural Entropy to Characterize Small Proteins (70 aa) and Their Interactions","publication_year":2009,"publication_date":"2009-02-20","ids":{"openalex":"https://openalex.org/W2084587400","doi":"https://doi.org/10.3390/e11010062","mag":"2084587400"},"language":"en","primary_location":{"id":"doi:10.3390/e11010062","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e11010062","pdf_url":"https://www.mdpi.com/1099-4300/11/1/62/pdf?version=1424784661","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1099-4300/11/1/62/pdf?version=1424784661","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110162129","display_name":"Katarzyna Prymula","orcid":null},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]},{"id":"https://openalex.org/I4391012572","display_name":"Akademickie Centrum Komputerowe Cyfronet AGH","ror":"https://ror.org/0575jwx13","country_code":"PL","type":"education","lineage":["https://openalex.org/I4391012572"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Katarzyna Prymula","raw_affiliation_strings":["Department of Bioinformatics and Telemedicine, Collegium Medicum - Jagiellonian University, Lazarza 16, 31-530 Krakow, Poland","Faculty of Chemistry, Jagiellonian University, Ingardena 3, 30-060 Krakow, Poland","Academic Computer Centre CYFRONET AGH"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Telemedicine, Collegium Medicum - Jagiellonian University, Lazarza 16, 31-530 Krakow, Poland","institution_ids":["https://openalex.org/I126596746"]},{"raw_affiliation_string":"Faculty of Chemistry, Jagiellonian University, Ingardena 3, 30-060 Krakow, Poland","institution_ids":["https://openalex.org/I126596746"]},{"raw_affiliation_string":"Academic Computer Centre CYFRONET AGH","institution_ids":["https://openalex.org/I4391012572"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087239926","display_name":"Irena Roterman","orcid":"https://orcid.org/0000-0003-3652-9099"},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Irena Roterman","raw_affiliation_strings":["Department of Bioinformatics and Telemedicine, Collegium Medicum - Jagiellonian University, Lazarza 16, 31-530 Krakow, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Telemedicine, Collegium Medicum - Jagiellonian University, Lazarza 16, 31-530 Krakow, Poland","institution_ids":["https://openalex.org/I126596746"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5087239926"],"corresponding_institution_ids":["https://openalex.org/I126596746"],"apc_list":{"value":2000,"currency":"CHF","value_usd":2165},"apc_paid":{"value":2000,"currency":"CHF","value_usd":2165},"fwci":1.0607,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.79195907,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"11","issue":"1","first_page":"62","last_page":"84"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/structural-similarity","display_name":"Structural similarity","score":0.5996580123901367},{"id":"https://openalex.org/keywords/entropy","display_name":"Entropy (arrow of time)","score":0.5057718753814697},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.5034999251365662},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4897313416004181},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.45589354634284973},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4431614875793457},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4358966052532196},{"id":"https://openalex.org/keywords/conformational-entropy","display_name":"Conformational entropy","score":0.42938172817230225},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4274669885635376},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.34025073051452637},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3282451033592224},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32372450828552246},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.29297009110450745},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2254079282283783},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20031696557998657},{"id":"https://openalex.org/keywords/thermodynamics","display_name":"Thermodynamics","score":0.15491172671318054},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.11456108093261719}],"concepts":[{"id":"https://openalex.org/C139489369","wikidata":"https://www.wikidata.org/wiki/Q770846","display_name":"Structural similarity","level":2,"score":0.5996580123901367},{"id":"https://openalex.org/C106301342","wikidata":"https://www.wikidata.org/wiki/Q4117933","display_name":"Entropy (arrow of time)","level":2,"score":0.5057718753814697},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.5034999251365662},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4897313416004181},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.45589354634284973},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4431614875793457},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4358966052532196},{"id":"https://openalex.org/C69308434","wikidata":"https://www.wikidata.org/wiki/Q5160266","display_name":"Conformational entropy","level":3,"score":0.42938172817230225},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4274669885635376},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.34025073051452637},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3282451033592224},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32372450828552246},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.29297009110450745},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2254079282283783},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20031696557998657},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.15491172671318054},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.11456108093261719},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3390/e11010062","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e11010062","pdf_url":"https://www.mdpi.com/1099-4300/11/1/62/pdf?version=1424784661","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:d5657945040f4d7cb1ca88b87cfbf6fa","is_oa":true,"landing_page_url":"https://doaj.org/article/d5657945040f4d7cb1ca88b87cfbf6fa","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Entropy, Vol 11, Iss 1, Pp 62-84 (2009)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/e11010062","is_oa":true,"landing_page_url":"https://doi.org/10.3390/e11010062","pdf_url":"https://www.mdpi.com/1099-4300/11/1/62/pdf?version=1424784661","source":{"id":"https://openalex.org/S195231649","display_name":"Entropy","issn_l":"1099-4300","issn":["1099-4300"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Entropy","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2084587400.pdf","grobid_xml":"https://content.openalex.org/works/W2084587400.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W157808733","https://openalex.org/W207966931","https://openalex.org/W613806986","https://openalex.org/W1501429408","https://openalex.org/W1505484385","https://openalex.org/W1527763631","https://openalex.org/W1534777183","https://openalex.org/W1550166367","https://openalex.org/W1747519124","https://openalex.org/W1794008186","https://openalex.org/W1942639844","https://openalex.org/W1967769136","https://openalex.org/W1971731200","https://openalex.org/W1972325703","https://openalex.org/W1974794066","https://openalex.org/W1975304761","https://openalex.org/W1980909118","https://openalex.org/W1984527736","https://openalex.org/W1986075035","https://openalex.org/W1994652908","https://openalex.org/W1995875735","https://openalex.org/W2017457582","https://openalex.org/W2028099075","https://openalex.org/W2031154947","https://openalex.org/W2033901315","https://openalex.org/W2035821961","https://openalex.org/W2039193596","https://openalex.org/W2043087411","https://openalex.org/W2046578757","https://openalex.org/W2047544230","https://openalex.org/W2054237139","https://openalex.org/W2062663912","https://openalex.org/W2072325285","https://openalex.org/W2076319221","https://openalex.org/W2086808970","https://openalex.org/W2091029121","https://openalex.org/W2093194676","https://openalex.org/W2107538253","https://openalex.org/W2109326579","https://openalex.org/W2114441129","https://openalex.org/W2129609495","https://openalex.org/W2133701300","https://openalex.org/W2146106056","https://openalex.org/W2152118825","https://openalex.org/W2152804149","https://openalex.org/W2162435335","https://openalex.org/W2175687390","https://openalex.org/W2417065780","https://openalex.org/W2443671149","https://openalex.org/W2464448009","https://openalex.org/W3107148387","https://openalex.org/W4238858501","https://openalex.org/W4255625815","https://openalex.org/W6608437512","https://openalex.org/W6631660295","https://openalex.org/W6640655398","https://openalex.org/W6717370802","https://openalex.org/W6719195418","https://openalex.org/W6719462585"],"related_works":["https://openalex.org/W4280624450","https://openalex.org/W3126783617","https://openalex.org/W2320975066","https://openalex.org/W3093468851","https://openalex.org/W2992653822","https://openalex.org/W2121688928","https://openalex.org/W2732388178","https://openalex.org/W2185518315","https://openalex.org/W2806488847","https://openalex.org/W4304140872"],"abstract_inverted_index":{"Proteins":[0],"composed":[1],"of":[2,33,42,45,54,64,67,96,102,114,123],"short":[3],"polypeptide":[4],"chains":[5],"(about":[6],"70":[7],"amino":[8],"acid":[9],"residues)":[10],"participating":[11],"in":[12,62,70,89,118,132],"ligand-protein":[13],"and":[14,22,35,38,79,127],"protein-protein":[15],"(small":[16],"size)":[17],"complex":[18],"creation":[19],"were":[20],"analyzed":[21],"classified":[23],"according":[24,83],"to":[25,51,84,107],"the":[26,48,52,55,85,93,103,119],"hydrophobicity":[27,86,104,128],"deficiency/excess":[28,105],"distribution":[29,129],"as":[30],"a":[31],"measure":[32],"structural":[34],"functional":[36],"specificity":[37],"similarity.":[39],"The":[40,73,100,121],"characterization":[41],"this":[43],"group":[44],"proteins":[46,97],"is":[47,130],"introductory":[49],"part":[50],"analysis":[53,95],"so":[56],"called":[57],"`Never":[58],"Born":[59],"Proteins'":[60],"(NBPs)":[61],"search":[63],"protein":[65],"compounds":[66],"biological":[68],"activity":[69],"pharmacological":[71],"context.":[72],"entropy":[74],"scale":[75],"(classification":[76],"between":[77],"random":[78],"deterministic":[80],"limits)":[81],"estimated":[82],"irregularity":[87],"organized":[88],"ranking":[90],"list":[91],"allows":[92],"comparative":[94],"under":[98],"consideration.":[99],"comparison":[101],"appeared":[106],"be":[108],"useful":[109],"for":[110],"similarity":[111],"recognition,":[112],"examples":[113],"which":[115],"are":[116],"shown":[117],"paper.":[120],"influence":[122],"mutations":[124],"on":[125],"structure":[126],"discussed":[131],"detail.":[133]},"counts_by_year":[{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
