{"id":"https://openalex.org/W4391263479","doi":"https://doi.org/10.3390/data9020024","title":"Mapping Hierarchical File Structures to Semantic Data Models for Efficient Data Integration into Research Data Management Systems","display_name":"Mapping Hierarchical File Structures to Semantic Data Models for Efficient Data Integration into Research Data Management Systems","publication_year":2024,"publication_date":"2024-01-26","ids":{"openalex":"https://openalex.org/W4391263479","doi":"https://doi.org/10.3390/data9020024"},"language":"en","primary_location":{"id":"doi:10.3390/data9020024","is_oa":true,"landing_page_url":"https://doi.org/10.3390/data9020024","pdf_url":"https://www.mdpi.com/2306-5729/9/2/24/pdf?version=1706266221","source":{"id":"https://openalex.org/S4210226510","display_name":"Data","issn_l":"2306-5729","issn":["2306-5729"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2306-5729/9/2/24/pdf?version=1706266221","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088676942","display_name":"Henrik tom W\u00f6rden","orcid":"https://orcid.org/0000-0002-5549-578X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Henrik tom W\u00f6rden","raw_affiliation_strings":["Indiscale GmbH, 37083 G\u00f6ttingen, Germany"],"raw_orcid":"https://orcid.org/0000-0002-5549-578X","affiliations":[{"raw_affiliation_string":"Indiscale GmbH, 37083 G\u00f6ttingen, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043373037","display_name":"Florian Spreckelsen","orcid":"https://orcid.org/0000-0002-6856-2910"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Florian Spreckelsen","raw_affiliation_strings":["Indiscale GmbH, 37083 G\u00f6ttingen, Germany"],"raw_orcid":"https://orcid.org/0000-0002-6856-2910","affiliations":[{"raw_affiliation_string":"Indiscale GmbH, 37083 G\u00f6ttingen, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026079304","display_name":"Stefan Luther","orcid":"https://orcid.org/0000-0001-7214-8125"},"institutions":[{"id":"https://openalex.org/I4210088711","display_name":"Max Planck Institute for Dynamics and Self-Organization","ror":"https://ror.org/0087djs12","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210088711"]},{"id":"https://openalex.org/I4210116730","display_name":"Universit\u00e4tsmedizin G\u00f6ttingen","ror":"https://ror.org/021ft0n22","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210116730"]},{"id":"https://openalex.org/I4210127591","display_name":"German Centre for Cardiovascular Research","ror":"https://ror.org/031t5w623","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127591","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Luther","raw_affiliation_strings":["German Center for Cardiovascular Research (DZHK), Partner Site G\u00f6ttingen, 37075 G\u00f6ttingen, Germany","Institute for the Dynamics of Complex Systems, Georg-August-Universit\u00e4t, 37077 G\u00f6ttingen, Germany","Institute of Pharmacology and Toxicology, University Medical Center G\u00f6ttingen, 37075 G\u00f6ttingen, Germany","Max Planck Institute for Dynamics and Self-Organization, 37077 G\u00f6ttingen, Germany"],"raw_orcid":"https://orcid.org/0000-0001-7214-8125","affiliations":[{"raw_affiliation_string":"German Center for Cardiovascular Research (DZHK), Partner Site G\u00f6ttingen, 37075 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I4210127591"]},{"raw_affiliation_string":"Institute for the Dynamics of Complex Systems, Georg-August-Universit\u00e4t, 37077 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]},{"raw_affiliation_string":"Institute of Pharmacology and Toxicology, University Medical Center G\u00f6ttingen, 37075 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192","https://openalex.org/I4210116730"]},{"raw_affiliation_string":"Max Planck Institute for Dynamics and Self-Organization, 37077 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I4210088711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056288636","display_name":"Ulrich Parlitz","orcid":"https://orcid.org/0000-0003-3058-1435"},"institutions":[{"id":"https://openalex.org/I4210088711","display_name":"Max Planck Institute for Dynamics and Self-Organization","ror":"https://ror.org/0087djs12","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210088711"]},{"id":"https://openalex.org/I4210127591","display_name":"German Centre for Cardiovascular Research","ror":"https://ror.org/031t5w623","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127591","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ulrich Parlitz","raw_affiliation_strings":["German Center for Cardiovascular Research (DZHK), Partner Site G\u00f6ttingen, 37075 G\u00f6ttingen, Germany","Institute for the Dynamics of Complex Systems, Georg-August-Universit\u00e4t, 37077 G\u00f6ttingen, Germany","Max Planck Institute for Dynamics and Self-Organization, 37077 G\u00f6ttingen, Germany"],"raw_orcid":"https://orcid.org/0000-0003-3058-1435","affiliations":[{"raw_affiliation_string":"German Center for Cardiovascular Research (DZHK), Partner Site G\u00f6ttingen, 37075 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I4210127591"]},{"raw_affiliation_string":"Institute for the Dynamics of Complex Systems, Georg-August-Universit\u00e4t, 37077 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]},{"raw_affiliation_string":"Max Planck Institute for Dynamics and Self-Organization, 37077 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I4210088711"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082886631","display_name":"Alexander Schlemmer","orcid":"https://orcid.org/0000-0003-4124-9649"},"institutions":[{"id":"https://openalex.org/I4210088711","display_name":"Max Planck Institute for Dynamics and Self-Organization","ror":"https://ror.org/0087djs12","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210088711"]},{"id":"https://openalex.org/I4210127591","display_name":"German Centre for Cardiovascular Research","ror":"https://ror.org/031t5w623","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127591","https://openalex.org/I4405256427"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Alexander Schlemmer","raw_affiliation_strings":["German Center for Cardiovascular Research (DZHK), Partner Site G\u00f6ttingen, 37075 G\u00f6ttingen, Germany","Max Planck Institute for Dynamics and Self-Organization, 37077 G\u00f6ttingen, Germany"],"raw_orcid":"https://orcid.org/0000-0003-4124-9649","affiliations":[{"raw_affiliation_string":"German Center for Cardiovascular Research (DZHK), Partner Site G\u00f6ttingen, 37075 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I4210127591"]},{"raw_affiliation_string":"Max Planck Institute for Dynamics and Self-Organization, 37077 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I4210088711"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5082886631"],"corresponding_institution_ids":["https://openalex.org/I4210088711","https://openalex.org/I4210127591"],"apc_list":{"value":1600,"currency":"CHF","value_usd":1732},"apc_paid":{"value":1600,"currency":"CHF","value_usd":1732},"fwci":4.7154,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.9488483,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"9","issue":"2","first_page":"24","last_page":"24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7369378209114075},{"id":"https://openalex.org/keywords/data-mapping","display_name":"Data mapping","score":0.6332350969314575},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.5543387532234192},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5418752431869507},{"id":"https://openalex.org/keywords/semantic-integration","display_name":"Semantic integration","score":0.4588722288608551},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4435540437698364},{"id":"https://openalex.org/keywords/idef1x","display_name":"IDEF1X","score":0.42219775915145874},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4085189402103424},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3694196939468384},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3509768843650818},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.28234630823135376},{"id":"https://openalex.org/keywords/semantic-computing","display_name":"Semantic computing","score":0.23489132523536682},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.173660010099411}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7369378209114075},{"id":"https://openalex.org/C137314826","wikidata":"https://www.wikidata.org/wiki/Q2330408","display_name":"Data mapping","level":2,"score":0.6332350969314575},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.5543387532234192},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5418752431869507},{"id":"https://openalex.org/C110903229","wikidata":"https://www.wikidata.org/wiki/Q7449064","display_name":"Semantic integration","level":4,"score":0.4588722288608551},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4435540437698364},{"id":"https://openalex.org/C196621874","wikidata":"https://www.wikidata.org/wiki/Q385210","display_name":"IDEF1X","level":4,"score":0.42219775915145874},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4085189402103424},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3694196939468384},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3509768843650818},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.28234630823135376},{"id":"https://openalex.org/C511149849","wikidata":"https://www.wikidata.org/wiki/Q7449051","display_name":"Semantic computing","level":3,"score":0.23489132523536682},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.173660010099411}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3390/data9020024","is_oa":true,"landing_page_url":"https://doi.org/10.3390/data9020024","pdf_url":"https://www.mdpi.com/2306-5729/9/2/24/pdf?version=1706266221","source":{"id":"https://openalex.org/S4210226510","display_name":"Data","issn_l":"2306-5729","issn":["2306-5729"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:34c641a5b5234c1a8a08a290b223856e","is_oa":true,"landing_page_url":"https://doaj.org/article/34c641a5b5234c1a8a08a290b223856e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Data, Vol 9, Iss 2, p 24 (2024)","raw_type":"article"},{"id":"pmh:oai:publications.goettingen-research-online.de:2/142421","is_oa":true,"landing_page_url":"https://sfb1002.med.uni-goettingen.de/production/literature/publications/503","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.3390/data9020024","is_oa":true,"landing_page_url":"https://doi.org/10.3390/data9020024","pdf_url":"https://www.mdpi.com/2306-5729/9/2/24/pdf?version=1706266221","source":{"id":"https://openalex.org/S4210226510","display_name":"Data","issn_l":"2306-5729","issn":["2306-5729"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6499999761581421,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4391263479.pdf"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W335353633","https://openalex.org/W1612808768","https://openalex.org/W1964941055","https://openalex.org/W1965776893","https://openalex.org/W2032756564","https://openalex.org/W2057947771","https://openalex.org/W2083755493","https://openalex.org/W2122344857","https://openalex.org/W2174655541","https://openalex.org/W2302501749","https://openalex.org/W2341844252","https://openalex.org/W2784911891","https://openalex.org/W2951103577","https://openalex.org/W3005849574","https://openalex.org/W3015007669","https://openalex.org/W3027477766","https://openalex.org/W3098403908","https://openalex.org/W3111597350","https://openalex.org/W3115553721","https://openalex.org/W3122047183","https://openalex.org/W3153521914","https://openalex.org/W4281561925","https://openalex.org/W6671423705"],"related_works":["https://openalex.org/W2267702083","https://openalex.org/W2353528739","https://openalex.org/W651245762","https://openalex.org/W2382987876","https://openalex.org/W2073277777","https://openalex.org/W2157176736","https://openalex.org/W2276352092","https://openalex.org/W2113331693","https://openalex.org/W2590025346","https://openalex.org/W2883904729"],"abstract_inverted_index":{"Although":[0],"other":[1],"methods":[2],"exist":[3],"to":[4,31],"store":[5],"and":[6,24,59,64,89,121,141,144,153],"manage":[7],"data":[8,35,48,58,69,100,123,154,160],"in":[9,101,103,133,157],"modern":[10],"information":[11],"technology,":[12],"the":[13,50,82,86,106,150,167,176,185,200],"standard":[14],"solution":[15],"is":[16,109],"file":[17,22,25,39,87,107,119,151,192],"systems.":[18],"Therefore,":[19],"keeping":[20,99,118],"well-organized":[21],"structures":[23,40,120],"system":[26,88,152,193],"layouts":[27],"can":[28,73,94,178],"be":[29],"key":[30],"a":[32,131,139,147,181],"sustainable":[33],"research":[34,159],"management":[36,70],"infrastructure.":[37],"However,":[38],"alone":[41],"lack":[42],"several":[43],"important":[44],"capabilities":[45],"for":[46,62,117,138,171],"FAIR":[47],"management:":[49],"two":[51],"most":[52],"significant":[53],"being":[54],"insufficient":[55],"visualization":[56],"of":[57,85,146,169,190],"inadequate":[60],"possibilities":[61],"searching":[63],"obtaining":[65],"an":[66],"overview.":[67],"Research":[68],"systems":[71],"(RDMSs)":[72],"fill":[74],"this":[75],"gap,":[76],"but":[77,98],"many":[78,96],"do":[79],"not":[80],"support":[81],"simultaneous":[83,92],"use":[84,93,173],"RDMS.":[90],"This":[91],"have":[95],"benefits,":[97],"RDMS":[102,203],"synchrony":[104],"with":[105],"structure":[108],"challenging.":[110],"Here,":[111],"we":[112,129],"present":[113],"concepts":[114,164],"that":[115,136],"allow":[116],"semantic":[122,158],"models":[124,155],"(in":[125],"RDMS)":[126],"synchronous.":[127],"Furthermore,":[128,175],"propose":[130],"specification":[132,177],"yaml":[134],"format":[135],"allows":[137],"structured":[140],"extensible":[142],"declaration":[143],"implementation":[145],"mapping":[148],"between":[149],"used":[156],"management.":[161],"Implementing":[162],"these":[163],"will":[165],"facilitate":[166],"re-use":[168],"specifications":[170],"multiple":[172],"cases.":[174],"serve":[179],"as":[180],"machine-readable":[182],"and,":[183],"at":[184],"same":[186],"time,":[187],"human-readable":[188],"documentation":[189],"specific":[191],"structures.":[194],"We":[195],"demonstrate":[196],"our":[197],"work":[198],"using":[199],"Open":[201],"Source":[202],"LinkAhead":[204],"(previously":[205],"named":[206],"\u201cCaosDB\u201d).":[207]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
