{"id":"https://openalex.org/W3122142637","doi":"https://doi.org/10.3390/computers10020018","title":"Network Analysis of Local Gene Regulators in Arabidopsis thaliana under Spaceflight Stress","display_name":"Network Analysis of Local Gene Regulators in Arabidopsis thaliana under Spaceflight Stress","publication_year":2021,"publication_date":"2021-01-28","ids":{"openalex":"https://openalex.org/W3122142637","doi":"https://doi.org/10.3390/computers10020018","mag":"3122142637"},"language":"en","primary_location":{"id":"doi:10.3390/computers10020018","is_oa":true,"landing_page_url":"https://doi.org/10.3390/computers10020018","pdf_url":"https://www.mdpi.com/2073-431X/10/2/18/pdf?version=1611816939","source":{"id":"https://openalex.org/S4210228075","display_name":"Computers","issn_l":"2073-431X","issn":["2073-431X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2073-431X/10/2/18/pdf?version=1611816939","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064562150","display_name":"Vidya Manian","orcid":"https://orcid.org/0000-0003-3834-8857"},"institutions":[{"id":"https://openalex.org/I60388903","display_name":"University of Puerto Rico-Mayaguez","ror":"https://ror.org/00wek6x04","country_code":"PR","type":"education","lineage":["https://openalex.org/I200399037","https://openalex.org/I60388903"]}],"countries":["PR"],"is_corresponding":true,"raw_author_name":"Vidya Manian","raw_affiliation_strings":["Department of Bioengineering, University of Puerto Rico, Mayaguez, PR 00681-9000, USA","Department of Electrical and Computer Engineering, University of Puerto Rico, Mayaguez, PR 00681-9000, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of Puerto Rico, Mayaguez, PR 00681-9000, USA","institution_ids":["https://openalex.org/I60388903"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Puerto Rico, Mayaguez, PR 00681-9000, USA","institution_ids":["https://openalex.org/I60388903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015637947","display_name":"Harshini Gangapuram","orcid":"https://orcid.org/0000-0002-3113-8016"},"institutions":[{"id":"https://openalex.org/I60388903","display_name":"University of Puerto Rico-Mayaguez","ror":"https://ror.org/00wek6x04","country_code":"PR","type":"education","lineage":["https://openalex.org/I200399037","https://openalex.org/I60388903"]}],"countries":["PR"],"is_corresponding":false,"raw_author_name":"Harshini Gangapuram","raw_affiliation_strings":["Department of Bioengineering, University of Puerto Rico, Mayaguez, PR 00681-9000, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of Puerto Rico, Mayaguez, PR 00681-9000, USA","institution_ids":["https://openalex.org/I60388903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081547602","display_name":"Jairo Orozco-Sandoval","orcid":"https://orcid.org/0000-0001-5438-1177"},"institutions":[{"id":"https://openalex.org/I60388903","display_name":"University of Puerto Rico-Mayaguez","ror":"https://ror.org/00wek6x04","country_code":"PR","type":"education","lineage":["https://openalex.org/I200399037","https://openalex.org/I60388903"]}],"countries":["PR"],"is_corresponding":false,"raw_author_name":"Jairo Orozco","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Puerto Rico, Mayaguez, PR 00681-9000, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Puerto Rico, Mayaguez, PR 00681-9000, USA","institution_ids":["https://openalex.org/I60388903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032713845","display_name":"Heeralal Janwa","orcid":"https://orcid.org/0000-0001-8907-015X"},"institutions":[{"id":"https://openalex.org/I1662191","display_name":"University of Puerto Rico at R\u00edo Piedras","ror":"https://ror.org/0453v4r20","country_code":"PR","type":"education","lineage":["https://openalex.org/I1662191","https://openalex.org/I200399037"]}],"countries":["PR"],"is_corresponding":false,"raw_author_name":"Heeralal Janwa","raw_affiliation_strings":["Department of Mathematics, University of Puerto Rico, Rio Piedras, PR 00925-2537, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Puerto Rico, Rio Piedras, PR 00925-2537, USA","institution_ids":["https://openalex.org/I1662191"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045963368","display_name":"Carlos Agrinsoni","orcid":"https://orcid.org/0000-0002-5130-8860"},"institutions":[{"id":"https://openalex.org/I1662191","display_name":"University of Puerto Rico at R\u00edo Piedras","ror":"https://ror.org/0453v4r20","country_code":"PR","type":"education","lineage":["https://openalex.org/I1662191","https://openalex.org/I200399037"]}],"countries":["PR"],"is_corresponding":false,"raw_author_name":"Carlos Agrinsoni","raw_affiliation_strings":["Department of Mathematics, University of Puerto Rico, Rio Piedras, PR 00925-2537, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Puerto Rico, Rio Piedras, PR 00925-2537, USA","institution_ids":["https://openalex.org/I1662191"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5064562150"],"corresponding_institution_ids":["https://openalex.org/I60388903"],"apc_list":{"value":1600,"currency":"CHF","value_usd":1732},"apc_paid":{"value":1600,"currency":"CHF","value_usd":1732},"fwci":0.6436,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.65463393,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"10","issue":"2","first_page":"18","last_page":"18"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.9793000221252441,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10476","display_name":"Algal biology and biofuel production","score":0.9692999720573425,"subfield":{"id":"https://openalex.org/subfields/2105","display_name":"Renewable Energy, Sustainability and the Environment"},"field":{"id":"https://openalex.org/fields/21","display_name":"Energy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/spaceflight","display_name":"Spaceflight","score":0.8328628540039062},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6363581418991089},{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.5904619097709656},{"id":"https://openalex.org/keywords/arabidopsis","display_name":"Arabidopsis","score":0.5847846269607544},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5582677125930786},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4703424572944641},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41337400674819946},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3644775152206421},{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.12578770518302917},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08816924691200256}],"concepts":[{"id":"https://openalex.org/C103888896","wikidata":"https://www.wikidata.org/wiki/Q5916","display_name":"Spaceflight","level":2,"score":0.8328628540039062},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6363581418991089},{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.5904619097709656},{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.5847846269607544},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5582677125930786},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4703424572944641},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41337400674819946},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3644775152206421},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.12578770518302917},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08816924691200256},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3390/computers10020018","is_oa":true,"landing_page_url":"https://doi.org/10.3390/computers10020018","pdf_url":"https://www.mdpi.com/2073-431X/10/2/18/pdf?version=1611816939","source":{"id":"https://openalex.org/S4210228075","display_name":"Computers","issn_l":"2073-431X","issn":["2073-431X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:b5e39deeee6f4f9f9987a1f6ca30a89c","is_oa":true,"landing_page_url":"https://doaj.org/article/b5e39deeee6f4f9f9987a1f6ca30a89c","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computers, Vol 10, Iss 2, p 18 (2021)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/computers10020018","is_oa":true,"landing_page_url":"https://doi.org/10.3390/computers10020018","pdf_url":"https://www.mdpi.com/2073-431X/10/2/18/pdf?version=1611816939","source":{"id":"https://openalex.org/S4210228075","display_name":"Computers","issn_l":"2073-431X","issn":["2073-431X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.4699999988079071,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3122142637.pdf","grobid_xml":"https://content.openalex.org/works/W3122142637.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W243896188","https://openalex.org/W1494075612","https://openalex.org/W1507292651","https://openalex.org/W1580960713","https://openalex.org/W1900937478","https://openalex.org/W1968509530","https://openalex.org/W1971937094","https://openalex.org/W1993418188","https://openalex.org/W2004699076","https://openalex.org/W2016493881","https://openalex.org/W2023692919","https://openalex.org/W2040956707","https://openalex.org/W2051027814","https://openalex.org/W2056944867","https://openalex.org/W2057470573","https://openalex.org/W2059674956","https://openalex.org/W2082451922","https://openalex.org/W2097927039","https://openalex.org/W2111478008","https://openalex.org/W2112090702","https://openalex.org/W2112328470","https://openalex.org/W2112615110","https://openalex.org/W2122623449","https://openalex.org/W2124637492","https://openalex.org/W2128374508","https://openalex.org/W2130410032","https://openalex.org/W2133111499","https://openalex.org/W2138621811","https://openalex.org/W2141540561","https://openalex.org/W2145541974","https://openalex.org/W2156716434","https://openalex.org/W2161271430","https://openalex.org/W2162491638","https://openalex.org/W2165816035","https://openalex.org/W2303875941","https://openalex.org/W2418912992","https://openalex.org/W2484037414","https://openalex.org/W2559588208","https://openalex.org/W2592164301","https://openalex.org/W2605068580","https://openalex.org/W2609428401","https://openalex.org/W2611577721","https://openalex.org/W2624021832","https://openalex.org/W2726223636","https://openalex.org/W2780443773","https://openalex.org/W2887442076","https://openalex.org/W2889327166","https://openalex.org/W2908738984","https://openalex.org/W2918954997","https://openalex.org/W2932347607","https://openalex.org/W2973021690","https://openalex.org/W2980069443","https://openalex.org/W3012467318","https://openalex.org/W3023463052","https://openalex.org/W3037000643","https://openalex.org/W3142588439","https://openalex.org/W4240681178","https://openalex.org/W6630394651","https://openalex.org/W6651355187","https://openalex.org/W6684281289","https://openalex.org/W6736954319","https://openalex.org/W6768213702","https://openalex.org/W6776684711","https://openalex.org/W6780619644"],"related_works":["https://openalex.org/W2996915774","https://openalex.org/W1594012662","https://openalex.org/W2106134872","https://openalex.org/W2269421989","https://openalex.org/W3147624048","https://openalex.org/W2006745274","https://openalex.org/W2355042192","https://openalex.org/W2391996571","https://openalex.org/W2372627703","https://openalex.org/W1987749596"],"abstract_inverted_index":{"Spaceflight":[0],"microgravity":[1,38,106],"affects":[2],"normal":[3],"plant":[4,14,228],"growth":[5,45],"in":[6,20,37,46,60,104,121,193,219,223],"several":[7,178],"ways.":[8],"The":[9,49,112,190,206],"transcriptional":[10],"dataset":[11],"of":[12,57,71,82,98,102,115,200],"the":[13,21,41,55,58,80,109,122,129,141,154,169,172,198,213,220,227,233],"model":[15],"organism":[16],"Arabidopsis":[17,103,201],"thaliana":[18],"grown":[19],"international":[22],"space":[23],"station":[24],"is":[25,52,88,132,157],"mined":[26],"using":[27],"graph-theoretic":[28],"network":[29,93,131],"analysis":[30],"approaches":[31],"to":[32,108,159,203,229,232],"identify":[33,163],"significant":[34],"gene":[35,91,96,176],"transcriptions":[36],"essential":[39],"for":[40,54,90],"plant\u2019s":[42],"survival":[43,56],"and":[44,79,117,125,151,153,162,174,184,208],"altered":[47,191],"environments.":[48],"photosynthesis":[50,183,214],"process":[51,124,222],"critical":[53],"plants":[59],"spaceflight":[61,105,194,224,234],"under":[62],"different":[63,100],"environmentally":[64],"stressful":[65],"conditions":[66,192],"such":[67],"as":[68],"lower":[69],"levels":[70],"gravity,":[72],"lesser":[73],"oxygen":[74],"availability,":[75],"low":[76],"atmospheric":[77],"pressure,":[78],"presence":[81],"cosmic":[83],"radiation.":[84],"Lasso":[85],"regression":[86,135],"method":[87],"used":[89,158],"regulatory":[92],"inferencing":[94],"from":[95,140,168],"expressions":[97],"four":[99],"ecotypes":[101,199],"related":[107],"photosynthetic":[110,123],"process.":[111],"individual":[113],"behavior":[114],"hub-genes":[116],"stress":[118],"response":[119],"genes":[120,161,167,187,211,215],"their":[126],"impact":[127],"on":[128,136],"whole":[130],"analyzed.":[133],"Logistic":[134],"centrality":[137],"measures":[138],"computed":[139],"networks,":[142],"including":[143],"average":[144],"shortest":[145],"path,":[146],"betweenness":[147],"centrality,":[148,150],"closeness":[149],"eccentricity,":[152],"HITS":[155],"algorithm":[156],"rank":[160],"interactor":[164],"or":[165],"target":[166],"networks.":[170],"Through":[171],"hub":[173],"authority":[175],"interactions,":[177],"biological":[179],"processes":[180],"associated":[181],"with":[182],"carbon":[185],"fixation":[186],"are":[188,217],"identified.":[189],"have":[195],"made":[196],"all":[197],"sensitive":[202],"dehydration-and-salt":[204],"stress.":[205],"oxidative":[207],"heat-shock":[209],"stress-response":[210],"regulate":[212],"that":[216],"involved":[218],"oxidation-reduction":[221],"microgravity,":[225],"enabling":[226],"adapt":[230],"successfully":[231],"environment.":[235]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2021-02-01T00:00:00"}
