{"id":"https://openalex.org/W3029391172","doi":"https://doi.org/10.3390/computation8020053","title":"Computational View toward the Inhibition of SARS-CoV-2 Spike Glycoprotein and the 3CL Protease","display_name":"Computational View toward the Inhibition of SARS-CoV-2 Spike Glycoprotein and the 3CL Protease","publication_year":2020,"publication_date":"2020-05-31","ids":{"openalex":"https://openalex.org/W3029391172","doi":"https://doi.org/10.3390/computation8020053","mag":"3029391172","pmid":"https://pubmed.ncbi.nlm.nih.gov/32661494"},"language":"en","primary_location":{"id":"doi:10.3390/computation8020053","is_oa":true,"landing_page_url":"https://doi.org/10.3390/computation8020053","pdf_url":"https://www.mdpi.com/2079-3197/8/2/53/pdf?version=1592984204","source":{"id":"https://openalex.org/S2738402919","display_name":"Computation","issn_l":"2079-3197","issn":["2079-3197"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computation","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2079-3197/8/2/53/pdf?version=1592984204","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Zhen Qiao","orcid":null},"institutions":[{"id":"https://openalex.org/I27804330","display_name":"Brown University","ror":"https://ror.org/05gq02987","country_code":"US","type":"education","lineage":["https://openalex.org/I27804330"]},{"id":"https://openalex.org/I2800446032","display_name":"Rhode Island Hospital","ror":"https://ror.org/01aw9fv09","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2800446032","https://openalex.org/I4210151747"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhen Qiao","raw_affiliation_strings":["Department of Orthopaedics, The Warren Alpert Medical School of Brown University, Rhode Island Hospital, Providence, RI 02903, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Orthopaedics, The Warren Alpert Medical School of Brown University, Rhode Island Hospital, Providence, RI 02903, USA","institution_ids":["https://openalex.org/I2800446032","https://openalex.org/I27804330"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100400407","display_name":"Hongtao Zhang","orcid":"https://orcid.org/0000-0001-9173-0049"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongtao Zhang","raw_affiliation_strings":["Departments of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19301, USA"],"raw_orcid":"https://orcid.org/0000-0001-9173-0049","affiliations":[{"raw_affiliation_string":"Departments of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19301, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069057349","display_name":"Hai\u2010Feng Ji","orcid":"https://orcid.org/0000-0001-5450-0121"},"institutions":[{"id":"https://openalex.org/I72816309","display_name":"Drexel University","ror":"https://ror.org/04bdffz58","country_code":"US","type":"education","lineage":["https://openalex.org/I72816309"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hai-Feng Ji","raw_affiliation_strings":["Department of Chemistry, Drexel University, Philadelphia, PA 19104, USA"],"raw_orcid":"https://orcid.org/0000-0001-5450-0121","affiliations":[{"raw_affiliation_string":"Department of Chemistry, Drexel University, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I72816309"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026302891","display_name":"Qian Chen","orcid":"https://orcid.org/0000-0003-4406-5618"},"institutions":[{"id":"https://openalex.org/I27804330","display_name":"Brown University","ror":"https://ror.org/05gq02987","country_code":"US","type":"education","lineage":["https://openalex.org/I27804330"]},{"id":"https://openalex.org/I2800446032","display_name":"Rhode Island Hospital","ror":"https://ror.org/01aw9fv09","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2800446032","https://openalex.org/I4210151747"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qian Chen","raw_affiliation_strings":["Department of Orthopaedics, The Warren Alpert Medical School of Brown University, Rhode Island Hospital, Providence, RI 02903, USA"],"raw_orcid":"https://orcid.org/0000-0003-4406-5618","affiliations":[{"raw_affiliation_string":"Department of Orthopaedics, The Warren Alpert Medical School of Brown University, Rhode Island Hospital, Providence, RI 02903, USA","institution_ids":["https://openalex.org/I2800446032","https://openalex.org/I27804330"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5069057349"],"corresponding_institution_ids":["https://openalex.org/I72816309"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":4.3694,"has_fulltext":true,"cited_by_count":33,"citation_normalized_percentile":{"value":0.9532074,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"8","issue":"2","first_page":"53","last_page":"53"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10526","display_name":"HIV/AIDS drug development and treatment","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protease","display_name":"Protease","score":0.6871172189712524},{"id":"https://openalex.org/keywords/saquinavir","display_name":"Saquinavir","score":0.510793924331665},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.5070724487304688},{"id":"https://openalex.org/keywords/spike","display_name":"Spike (software development)","score":0.47215843200683594},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.47020941972732544},{"id":"https://openalex.org/keywords/lopinavir","display_name":"Lopinavir","score":0.45079874992370605},{"id":"https://openalex.org/keywords/coronavirus","display_name":"Coronavirus","score":0.42757901549339294},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.41437551379203796},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.40074411034584045},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.3874813914299011},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3085697889328003},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.25567710399627686},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.17690101265907288},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.1444392204284668},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.13222628831863403},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.13157597184181213},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.09085741639137268}],"concepts":[{"id":"https://openalex.org/C2776714187","wikidata":"https://www.wikidata.org/wiki/Q212410","display_name":"Protease","level":3,"score":0.6871172189712524},{"id":"https://openalex.org/C2776937687","wikidata":"https://www.wikidata.org/wiki/Q422654","display_name":"Saquinavir","level":5,"score":0.510793924331665},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.5070724487304688},{"id":"https://openalex.org/C2781390188","wikidata":"https://www.wikidata.org/wiki/Q25203449","display_name":"Spike (software development)","level":2,"score":0.47215843200683594},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.47020941972732544},{"id":"https://openalex.org/C2777182164","wikidata":"https://www.wikidata.org/wiki/Q422585","display_name":"Lopinavir","level":5,"score":0.45079874992370605},{"id":"https://openalex.org/C2777648638","wikidata":"https://www.wikidata.org/wiki/Q57751738","display_name":"Coronavirus","level":5,"score":0.42757901549339294},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.41437551379203796},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.40074411034584045},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.3874813914299011},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3085697889328003},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.25567710399627686},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.17690101265907288},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.1444392204284668},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.13222628831863403},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.13157597184181213},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.09085741639137268},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C2993143319","wikidata":"https://www.wikidata.org/wiki/Q583050","display_name":"Antiretroviral therapy","level":4,"score":0.0},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.0},{"id":"https://openalex.org/C142462285","wikidata":"https://www.wikidata.org/wiki/Q2528140","display_name":"Viral load","level":3,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.3390/computation8020053","is_oa":true,"landing_page_url":"https://doi.org/10.3390/computation8020053","pdf_url":"https://www.mdpi.com/2079-3197/8/2/53/pdf?version=1592984204","source":{"id":"https://openalex.org/S2738402919","display_name":"Computation","issn_l":"2079-3197","issn":["2079-3197"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computation","raw_type":"journal-article"},{"id":"pmid:32661494","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32661494","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computation (Basel, Switzerland)","raw_type":null},{"id":"pmh:oai:doaj.org/article:756588f4bc8349669eeec3e0f82552b6","is_oa":true,"landing_page_url":"https://doaj.org/article/756588f4bc8349669eeec3e0f82552b6","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computation, Vol 8, Iss 2, p 53 (2020)","raw_type":"article"},{"id":"pmh:oai:frl.publisso.de:frl:6421194","is_oa":true,"landing_page_url":"https://repository.publisso.de/resource/frl:6421194","pdf_url":null,"source":{"id":"https://openalex.org/S4377196269","display_name":"PUBLISSO (German National Library of Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210112663","host_organization_name":"ZB MED - Information Centre for Life Sciences","host_organization_lineage":["https://openalex.org/I4210112663"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computation, 8(2):53","raw_type":"Zeitschriftenartikel"},{"id":"pmh:oai:mdpi.com:/2079-3197/8/2/53/","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3390/computation8020053","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computation","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7357730","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7357730","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computation (Basel)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/computation8020053","is_oa":true,"landing_page_url":"https://doi.org/10.3390/computation8020053","pdf_url":"https://www.mdpi.com/2079-3197/8/2/53/pdf?version=1592984204","source":{"id":"https://openalex.org/S2738402919","display_name":"Computation","issn_l":"2079-3197","issn":["2079-3197"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computation","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8199999928474426}],"awards":[{"id":"https://openalex.org/G1175653675","display_name":null,"funder_award_id":"P30 GM122732","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3029391172.pdf","grobid_xml":"https://content.openalex.org/works/W3029391172.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1526205344","https://openalex.org/W1913949000","https://openalex.org/W1980657378","https://openalex.org/W1986191025","https://openalex.org/W1994309500","https://openalex.org/W2002463725","https://openalex.org/W2028046413","https://openalex.org/W2060960672","https://openalex.org/W2061256139","https://openalex.org/W2065283382","https://openalex.org/W2069553052","https://openalex.org/W2071947027","https://openalex.org/W2079995754","https://openalex.org/W2105668062","https://openalex.org/W2108433768","https://openalex.org/W2110010969","https://openalex.org/W2116556781","https://openalex.org/W2130952724","https://openalex.org/W2132629607","https://openalex.org/W2133641393","https://openalex.org/W2134967712","https://openalex.org/W2140247386","https://openalex.org/W2150120685","https://openalex.org/W2150567120","https://openalex.org/W2170109565","https://openalex.org/W2242431214","https://openalex.org/W2513547424","https://openalex.org/W2594569232","https://openalex.org/W2999364275","https://openalex.org/W3004280078","https://openalex.org/W3004318991","https://openalex.org/W3015608194","https://openalex.org/W3102858258","https://openalex.org/W4214754383","https://openalex.org/W6631666057","https://openalex.org/W6774154705"],"related_works":["https://openalex.org/W3013282133","https://openalex.org/W2131792489","https://openalex.org/W3084498529","https://openalex.org/W4210401150","https://openalex.org/W3156800464","https://openalex.org/W3013048436","https://openalex.org/W3023213585","https://openalex.org/W3087747856","https://openalex.org/W3087427886","https://openalex.org/W3152387439"],"abstract_inverted_index":{"Since":[0],"the":[1,4,10,21,25,36,53,56,61,65,74,79,100,103],"outbreak":[2],"of":[3,27,38,68,78,102],"2019":[5],"novel":[6],"coronavirus":[7],"disease":[8],"(COVID-19),":[9],"medical":[11],"research":[12],"community":[13],"is":[14],"vigorously":[15],"seeking":[16],"a":[17],"treatment":[18,67],"to":[19,98],"control":[20,37],"infection":[22],"and":[23,60,93],"save":[24],"lives":[26],"severely":[28],"infected":[29],"patients.":[30],"The":[31,70],"main":[32],"potential":[33,66],"candidates":[34],"for":[35,55,64],"viruses":[39],"are":[40,95],"virally":[41],"targeted":[42],"agents.":[43],"In":[44],"this":[45],"short":[46],"letter,":[47],"we":[48],"report":[49],"our":[50],"calculations":[51],"on":[52],"inhibitors":[54,77],"SARS-CoV-2":[57,80,104],"3CL":[58,81],"protease":[59,82],"spike":[62],"protein":[63],"COVID-19.":[69],"results":[71],"show":[72],"that":[73],"most":[75,96],"potent":[76],"include":[83],"saquinavir,":[84],"tadalafil,":[85],"rivaroxaban,":[86],"sildenafil,":[87],"dasatinib,":[88],"etc.":[89],"Ergotamine,":[90],"amphotericin":[91],"b,":[92],"vancomycin":[94],"promising":[97],"block":[99],"interaction":[101],"S-protein":[105],"with":[106],"human":[107],"ACE-2.":[108]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":4}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
