{"id":"https://openalex.org/W2611013808","doi":"https://doi.org/10.3390/computation5020022","title":"Scatter Search Applied to the Inference of a Development Gene Network","display_name":"Scatter Search Applied to the Inference of a Development Gene Network","publication_year":2017,"publication_date":"2017-05-04","ids":{"openalex":"https://openalex.org/W2611013808","doi":"https://doi.org/10.3390/computation5020022","mag":"2611013808"},"language":"en","primary_location":{"id":"doi:10.3390/computation5020022","is_oa":true,"landing_page_url":"https://doi.org/10.3390/computation5020022","pdf_url":"https://www.mdpi.com/2079-3197/5/2/22/pdf?version=1513309522","source":{"id":"https://openalex.org/S2738402919","display_name":"Computation","issn_l":"2079-3197","issn":["2079-3197"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computation","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2079-3197/5/2/22/pdf?version=1513309522","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078304117","display_name":"Amir Masoud Abdol","orcid":"https://orcid.org/0000-0003-0509-2752"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Amir Abdol","raw_affiliation_strings":["Computational Science Lab, University of Amsterdam, Science Park 904, 1098XH Amsterdam, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0003-0509-2752","affiliations":[{"raw_affiliation_string":"Computational Science Lab, University of Amsterdam, Science Park 904, 1098XH Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002873993","display_name":"Damjan Cicin-Sain","orcid":null},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Damjan Cicin-Sain","raw_affiliation_strings":["EMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, 08003 Barcelona, Spain","Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091729787","display_name":"Jaap A. Kaandorp","orcid":"https://orcid.org/0000-0003-4558-7135"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Jaap Kaandorp","raw_affiliation_strings":["Computational Science Lab, University of Amsterdam, Science Park 904, 1098XH Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Science Lab, University of Amsterdam, Science Park 904, 1098XH Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012212547","display_name":"Anton Crombach","orcid":"https://orcid.org/0000-0002-2889-5120"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I187986737","display_name":"Coll\u00e8ge de France","ror":"https://ror.org/04ex24z53","country_code":"FR","type":"education","lineage":["https://openalex.org/I187986737"]},{"id":"https://openalex.org/I2746051580","display_name":"Universit\u00e9 Paris Sciences et Lettres","ror":"https://ror.org/013cjyk83","country_code":"FR","type":"education","lineage":["https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I4210113621","display_name":"Centre Interdisciplinaire de Recherche en Biologie","ror":"https://ror.org/01mvzn566","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I187986737","https://openalex.org/I4210096427","https://openalex.org/I4210113621"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES","FR"],"is_corresponding":true,"raw_author_name":"Anton Crombach","raw_affiliation_strings":["Centre for Interdisciplinary Research in Biology, College de France, CNRS, INSERM, PSL Research University, 75231 Paris, France","EMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, 08003 Barcelona, Spain","Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0002-2889-5120","affiliations":[{"raw_affiliation_string":"Centre for Interdisciplinary Research in Biology, College de France, CNRS, INSERM, PSL Research University, 75231 Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I187986737","https://openalex.org/I2746051580","https://openalex.org/I4210113621"]},{"raw_affiliation_string":"EMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5012212547"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I170486558","https://openalex.org/I187986737","https://openalex.org/I2746051580","https://openalex.org/I4210113621","https://openalex.org/I4210137962"],"apc_list":{"value":1600,"currency":"CHF","value_usd":1782},"apc_paid":{"value":1600,"currency":"CHF","value_usd":1782},"fwci":0.2027,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.5141309,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"5","issue":"2","first_page":"22","last_page":"22"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.8528740406036377},{"id":"https://openalex.org/keywords/simulated-annealing","display_name":"Simulated annealing","score":0.8091592192649841},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6952501535415649},{"id":"https://openalex.org/keywords/multicellular-organism","display_name":"Multicellular organism","score":0.5523216128349304},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5068026185035706},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44685864448547363},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.44379204511642456},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4244891107082367},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4203665256500244},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3754951059818268},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.25964945554733276},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2406969964504242},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16107910871505737}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.8528740406036377},{"id":"https://openalex.org/C126980161","wikidata":"https://www.wikidata.org/wiki/Q863783","display_name":"Simulated annealing","level":2,"score":0.8091592192649841},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6952501535415649},{"id":"https://openalex.org/C74318829","wikidata":"https://www.wikidata.org/wiki/Q36458","display_name":"Multicellular organism","level":3,"score":0.5523216128349304},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5068026185035706},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44685864448547363},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.44379204511642456},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4244891107082367},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4203665256500244},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3754951059818268},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.25964945554733276},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2406969964504242},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16107910871505737},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":8,"locations":[{"id":"doi:10.3390/computation5020022","is_oa":true,"landing_page_url":"https://doi.org/10.3390/computation5020022","pdf_url":"https://www.mdpi.com/2079-3197/5/2/22/pdf?version=1513309522","source":{"id":"https://openalex.org/S2738402919","display_name":"Computation","issn_l":"2079-3197","issn":["2079-3197"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computation","raw_type":"journal-article"},{"id":"pmh:oai:repositori-api.upf.edu:10230/55731","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/55731","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:uvapub:oai:dare.uva.nl:publications/b5945248-f35d-4580-8e9a-bebaae7ed947","is_oa":true,"landing_page_url":"https://dare.uva.nl/personal/pure/en/publications/scatter-search-applied-to-the-inference-of-a-development-gene-network(b5945248-f35d-4580-8e9a-bebaae7ed947).html","pdf_url":"https://dare.uva.nl/personal/pure/en/publications/scatter-search-applied-to-the-inference-of-a-development-gene-network(b5945248-f35d-4580-8e9a-bebaae7ed947).html","source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computation, 5(2):22. MDPI AG","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dare.uva.nl:openaire/b5945248-f35d-4580-8e9a-bebaae7ed947","is_oa":true,"landing_page_url":"https://hdl.handle.net/11245.1/b5945248-f35d-4580-8e9a-bebaae7ed947","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Abdol, A M, Cicin-Sain, D, Kaandorp, J A & Crombach, A 2017, 'Scatter Search Applied to the Inference of a Development Gene Network', Computation, vol. 5, no. 2, 22. https://doi.org/10.3390/computation5020022","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dare.uva.nl:openaire_cris_publications/b5945248-f35d-4580-8e9a-bebaae7ed947","is_oa":true,"landing_page_url":"https://handle.uba.uva.nl/personal/pure/en/publications/scatter-search-applied-to-the-inference-of-a-development-gene-network(b5945248-f35d-4580-8e9a-bebaae7ed947).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Abdol, A M, Cicin-Sain, D, Kaandorp, J A & Crombach, A 2017, 'Scatter Search Applied to the Inference of a Development Gene Network', Computation, vol. 5, no. 2, 22. https://doi.org/10.3390/computation5020022","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dare.uva.nl:publications/b5945248-f35d-4580-8e9a-bebaae7ed947","is_oa":false,"landing_page_url":"http://hdl.handle.net/11245.1/b5945248-f35d-4580-8e9a-bebaae7ed947","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:doaj.org/article:7d4c1f3659714ea2a8c7be18749c1d81","is_oa":true,"landing_page_url":"https://doaj.org/article/7d4c1f3659714ea2a8c7be18749c1d81","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computation, Vol 5, Iss 2, p 22 (2017)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/2079-3197/5/2/22/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/computation5020022","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computation; Volume 5; Issue 2; Pages: 22","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/computation5020022","is_oa":true,"landing_page_url":"https://doi.org/10.3390/computation5020022","pdf_url":"https://www.mdpi.com/2079-3197/5/2/22/pdf?version=1513309522","source":{"id":"https://openalex.org/S2738402919","display_name":"Computation","issn_l":"2079-3197","issn":["2079-3197"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computation","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.5199999809265137,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G5655821971","display_name":null,"funder_award_id":"SEV\u20102012\u20100208","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"}],"funders":[{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320323868","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96"},{"id":"https://openalex.org/F4320324477","display_name":"Fondation Bettencourt Schueller","ror":"https://ror.org/02p3abx23"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2611013808.pdf"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W601171635","https://openalex.org/W1600765471","https://openalex.org/W1729182382","https://openalex.org/W1982258483","https://openalex.org/W1985329511","https://openalex.org/W1989203963","https://openalex.org/W1991138583","https://openalex.org/W1993748758","https://openalex.org/W1998125620","https://openalex.org/W2003095799","https://openalex.org/W2009861584","https://openalex.org/W2010586622","https://openalex.org/W2022851401","https://openalex.org/W2024060531","https://openalex.org/W2028582548","https://openalex.org/W2036338631","https://openalex.org/W2039813668","https://openalex.org/W2048013262","https://openalex.org/W2051676319","https://openalex.org/W2061437600","https://openalex.org/W2064691827","https://openalex.org/W2074157239","https://openalex.org/W2076118717","https://openalex.org/W2080099981","https://openalex.org/W2082564851","https://openalex.org/W2085637888","https://openalex.org/W2087752119","https://openalex.org/W2094840051","https://openalex.org/W2095703590","https://openalex.org/W2102653059","https://openalex.org/W2106371135","https://openalex.org/W2110016625","https://openalex.org/W2111011458","https://openalex.org/W2117607492","https://openalex.org/W2124694236","https://openalex.org/W2131215809","https://openalex.org/W2133068979","https://openalex.org/W2135061355","https://openalex.org/W2137057693","https://openalex.org/W2150908245","https://openalex.org/W2151031807","https://openalex.org/W2152456759","https://openalex.org/W2166012954","https://openalex.org/W2166751342","https://openalex.org/W2198144363","https://openalex.org/W2206933645","https://openalex.org/W2254477169","https://openalex.org/W2260316583","https://openalex.org/W2571863445","https://openalex.org/W2587188664","https://openalex.org/W6676604559"],"related_works":["https://openalex.org/W1494108455","https://openalex.org/W2560421304","https://openalex.org/W2950199998","https://openalex.org/W2951387065","https://openalex.org/W2134575910","https://openalex.org/W4385727351","https://openalex.org/W2112534124","https://openalex.org/W4306798985","https://openalex.org/W2130939068","https://openalex.org/W3163717165"],"abstract_inverted_index":{"Efficient":[0],"network":[1,58,116],"inference":[2,117],"is":[3,159],"one":[4],"of":[5,8,16,40,67,76,92,115,169],"the":[6,14,86,89,101,107,141,167],"challenges":[7],"current-day":[9],"biology.":[10],"Its":[11],"application":[12,39],"to":[13,110],"study":[15],"development":[17,96],"has":[18],"seen":[19],"noteworthy":[20],"success,":[21],"yet":[22],"a":[23,37,63,113,119,160],"multicellular":[24],"context,":[25],"tissue":[26],"growth,":[27],"and":[28,35,47,74,134,165],"cellular":[29],"rearrangements":[30],"impose":[31],"additional":[32],"computational":[33,45],"costs":[34],"prohibit":[36],"wide":[38],"current":[41],"methods.":[42],"Therefore,":[43],"reducing":[44],"cost":[46],"providing":[48],"quick":[49],"feedback":[50],"at":[51,130],"intermediate":[52,77,142],"stages":[53],"are":[54],"desirable":[55],"features":[56],"for":[57,153,163],"inference.":[59],"Here":[60],"we":[61,150],"propose":[62],"hybrid":[64,108],"approach":[65,87,109],"composed":[66],"two":[68],"stages:":[69],"exploration":[70,164],"with":[71,79,118],"scatter":[72,126,157],"search":[73,127,158],"exploitation":[75],"solutions":[78],"low":[80,136],"temperature":[81,137],"simulated":[82,111,138],"annealing.":[83],"We":[84,105,123],"test":[85],"on":[88,100],"well-understood":[90],"process":[91],"early":[93],"body":[94],"plan":[95],"in":[97],"flies,":[98],"focusing":[99],"gap":[102],"gene":[103,170],"network.":[104],"compare":[106],"annealing,":[112],"method":[114],"proven":[120],"track":[121],"record.":[122],"find":[124],"that":[125,135,152],"performs":[128],"well":[129],"exploring":[131],"parameter":[132],"space":[133],"annealing":[139],"refines":[140],"results":[143],"into":[144],"excellent":[145],"model":[146],"fits.":[147],"From":[148],"this":[149],"conclude":[151],"poorly-studied":[154],"developmental":[155],"systems,":[156],"valuable":[161],"tool":[162],"accelerates":[166],"elucidation":[168],"regulatory":[171],"networks.":[172]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2017-05-12T00:00:00"}
