{"id":"https://openalex.org/W2007751459","doi":"https://doi.org/10.3390/computation2040221","title":"Computational and Statistical Analyses of Insertional Polymorphic Endogenous Retroviruses in a Non-Model Organism","display_name":"Computational and Statistical Analyses of Insertional Polymorphic Endogenous Retroviruses in a Non-Model Organism","publication_year":2014,"publication_date":"2014-11-28","ids":{"openalex":"https://openalex.org/W2007751459","doi":"https://doi.org/10.3390/computation2040221","mag":"2007751459"},"language":"en","primary_location":{"id":"doi:10.3390/computation2040221","is_oa":true,"landing_page_url":"https://doi.org/10.3390/computation2040221","pdf_url":"https://www.mdpi.com/2079-3197/2/4/221/pdf?version=1417184192","source":{"id":"https://openalex.org/S2738402919","display_name":"Computation","issn_l":"2079-3197","issn":["2079-3197"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computation","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2079-3197/2/4/221/pdf?version=1417184192","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010808240","display_name":"Le Bao","orcid":"https://orcid.org/0000-0003-0191-5918"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Le Bao","raw_affiliation_strings":["Department of Statistics, The Pennsylvania State University, University Park, PA 16802, USA"],"affiliations":[{"raw_affiliation_string":"Department of Statistics, The Pennsylvania State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055158197","display_name":"Daniel Elleder","orcid":"https://orcid.org/0000-0001-9041-5274"},"institutions":[{"id":"https://openalex.org/I202391551","display_name":"Czech Academy of Sciences","ror":"https://ror.org/053avzc18","country_code":"CZ","type":"government","lineage":["https://openalex.org/I202391551"]},{"id":"https://openalex.org/I4210138103","display_name":"Czech Academy of Sciences, Institute of Molecular Genetics","ror":"https://ror.org/045syc608","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210138103"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Daniel Elleder","raw_affiliation_strings":["Institute of Molecular Genetics, Academy of Sciences of the Czech Republic, Videnska 1083, Prague, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular Genetics, Academy of Sciences of the Czech Republic, Videnska 1083, Prague, Czech Republic","institution_ids":["https://openalex.org/I202391551","https://openalex.org/I4210138103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107809194","display_name":"Raunaq Malhotra","orcid":"https://orcid.org/0000-0002-7253-850X"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Raunaq Malhotra","raw_affiliation_strings":["Department of Computer Science and Engineering, The Pennsylvania State University,  University Park, PA 16802, USA","Department of Computer Science and Engineering, The Pennsylvania State University, University Park, PA 16802, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Pennsylvania State University,  University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, The Pennsylvania State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034595016","display_name":"Michael DeGiorgio","orcid":"https://orcid.org/0000-0003-4908-7234"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael DeGiorgio","raw_affiliation_strings":["Department of Biology, The Pennsylvania State University, University Park, PA 16802, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, The Pennsylvania State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003998237","display_name":"Theodora Maravegias","orcid":null},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Theodora Maravegias","raw_affiliation_strings":["Department of Biology, The Pennsylvania State University, University Park, PA 16802, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, The Pennsylvania State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034258131","display_name":"Lindsay M. Horvath","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lindsay Horvath","raw_affiliation_strings":["Department of Pathology, Johns Hopkins University, Baltimore, MD 21287, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, Johns Hopkins University, Baltimore, MD 21287, USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086070874","display_name":"Laura Carrel","orcid":"https://orcid.org/0000-0002-5868-4228"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I82783531","display_name":"Penn State Milton S. Hershey Medical Center","ror":"https://ror.org/01h22ap11","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I82783531"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Laura Carrel","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Penn State College of Medicine,  Hershey, PA 17033, USA","Department of Biochemistry and Molecular Biology, Penn State College of Medicine, Hershey, PA 17033, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Penn State College of Medicine,  Hershey, PA 17033, USA","institution_ids":["https://openalex.org/I82783531"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Penn State College of Medicine, Hershey, PA 17033, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002601571","display_name":"Colin M. Gillin","orcid":"https://orcid.org/0009-0006-1700-0762"},"institutions":[{"id":"https://openalex.org/I1308891854","display_name":"Oregon Department of Fish and Wildlife","ror":"https://ror.org/00w64gh11","country_code":"US","type":"government","lineage":["https://openalex.org/I1308891854"]},{"id":"https://openalex.org/I1343028186","display_name":"United States Fish and Wildlife Service","ror":"https://ror.org/04k7dar27","country_code":"US","type":"government","lineage":["https://openalex.org/I1335927249","https://openalex.org/I1343028186"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Colin Gillin","raw_affiliation_strings":["Department of Fish and Wildlife, 4034 Fairview Industrial Dr. S., Salem,  OR 97302, USA","Department of Fish and Wildlife, 4034 Fairview Industrial Dr. S., Salem, OR 97302, USA"],"affiliations":[{"raw_affiliation_string":"Department of Fish and Wildlife, 4034 Fairview Industrial Dr. S., Salem,  OR 97302, USA","institution_ids":["https://openalex.org/I1308891854","https://openalex.org/I1343028186"]},{"raw_affiliation_string":"Department of Fish and Wildlife, 4034 Fairview Industrial Dr. S., Salem, OR 97302, USA","institution_ids":["https://openalex.org/I1308891854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065850789","display_name":"Tom\u00e1\u0161 Hron","orcid":"https://orcid.org/0000-0002-0589-2568"},"institutions":[{"id":"https://openalex.org/I202391551","display_name":"Czech Academy of Sciences","ror":"https://ror.org/053avzc18","country_code":"CZ","type":"government","lineage":["https://openalex.org/I202391551"]},{"id":"https://openalex.org/I4210138103","display_name":"Czech Academy of Sciences, Institute of Molecular Genetics","ror":"https://ror.org/045syc608","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210138103"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Tom\u00e1\u0161 Hron","raw_affiliation_strings":["Institute of Molecular Genetics, Academy of Sciences of the Czech Republic, Videnska 1083, Prague, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular Genetics, Academy of Sciences of the Czech Republic, Videnska 1083, Prague, Czech Republic","institution_ids":["https://openalex.org/I202391551","https://openalex.org/I4210138103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082392874","display_name":"Helena F\u00e1bryov\u00e1","orcid":"https://orcid.org/0000-0001-7565-0495"},"institutions":[{"id":"https://openalex.org/I202391551","display_name":"Czech Academy of Sciences","ror":"https://ror.org/053avzc18","country_code":"CZ","type":"government","lineage":["https://openalex.org/I202391551"]},{"id":"https://openalex.org/I4210138103","display_name":"Czech Academy of Sciences, Institute of Molecular Genetics","ror":"https://ror.org/045syc608","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210138103"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Helena F\u00e1bryov\u00e1","raw_affiliation_strings":["Institute of Molecular Genetics, Academy of Sciences of the Czech Republic, Videnska 1083, Prague, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular Genetics, Academy of Sciences of the Czech Republic, Videnska 1083, Prague, Czech Republic","institution_ids":["https://openalex.org/I202391551","https://openalex.org/I4210138103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037735021","display_name":"David R. Hunter","orcid":"https://orcid.org/0000-0002-4976-9422"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Hunter","raw_affiliation_strings":["Department of Statistics, The Pennsylvania State University, University Park, PA 16802, USA"],"affiliations":[{"raw_affiliation_string":"Department of Statistics, The Pennsylvania State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080238858","display_name":"Mary Poss","orcid":"https://orcid.org/0000-0003-4147-2410"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mary Poss","raw_affiliation_strings":["Department of Biology, The Pennsylvania State University, University Park, PA 16802, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, The Pennsylvania State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5080238858"],"corresponding_institution_ids":["https://openalex.org/I130769515"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":2.3365,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.88746926,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"2","issue":"4","first_page":"221","last_page":"245"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8246241807937622},{"id":"https://openalex.org/keywords/endogenous-retrovirus","display_name":"Endogenous retrovirus","score":0.8072873950004578},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.772189736366272},{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.7578955292701721},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.556814968585968},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5436491370201111},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.5421441793441772},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3387134075164795},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15722033381462097}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8246241807937622},{"id":"https://openalex.org/C121346293","wikidata":"https://www.wikidata.org/wiki/Q1340715","display_name":"Endogenous retrovirus","level":4,"score":0.8072873950004578},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.772189736366272},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.7578955292701721},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.556814968585968},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5436491370201111},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.5421441793441772},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3387134075164795},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15722033381462097},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3390/computation2040221","is_oa":true,"landing_page_url":"https://doi.org/10.3390/computation2040221","pdf_url":"https://www.mdpi.com/2079-3197/2/4/221/pdf?version=1417184192","source":{"id":"https://openalex.org/S2738402919","display_name":"Computation","issn_l":"2079-3197","issn":["2079-3197"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computation","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:c8d23ac26268428fa8b85dc08ced9921","is_oa":true,"landing_page_url":"https://doaj.org/article/c8d23ac26268428fa8b85dc08ced9921","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computation, Vol 2, Iss 4, Pp 221-245 (2014)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/2079-3197/2/4/221/","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3390/computation2040221","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computation","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/computation2040221","is_oa":true,"landing_page_url":"https://doi.org/10.3390/computation2040221","pdf_url":"https://www.mdpi.com/2079-3197/2/4/221/pdf?version=1417184192","source":{"id":"https://openalex.org/S2738402919","display_name":"Computation","issn_l":"2079-3197","issn":["2079-3197"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computation","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7300000190734863,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G3247202825","display_name":null,"funder_award_id":"LK11215","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G6096014232","display_name":null,"funder_award_id":"06HQAG0131","funder_id":"https://openalex.org/F4320332183","funder_display_name":"U.S. Geological Survey"}],"funders":[{"id":"https://openalex.org/F4320321005","display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy","ror":"https://ror.org/037n8p820"},{"id":"https://openalex.org/F4320332183","display_name":"U.S. Geological Survey","ror":"https://ror.org/035a68863"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2007751459.pdf","grobid_xml":"https://content.openalex.org/works/W2007751459.grobid-xml"},"referenced_works_count":63,"referenced_works":["https://openalex.org/W306662213","https://openalex.org/W1664995006","https://openalex.org/W1965612692","https://openalex.org/W1966915893","https://openalex.org/W1972251398","https://openalex.org/W1975041634","https://openalex.org/W1983279230","https://openalex.org/W1988456502","https://openalex.org/W1990368529","https://openalex.org/W1997270596","https://openalex.org/W2002579489","https://openalex.org/W2013041617","https://openalex.org/W2014099509","https://openalex.org/W2014704298","https://openalex.org/W2036598329","https://openalex.org/W2042086471","https://openalex.org/W2046137036","https://openalex.org/W2049633694","https://openalex.org/W2050557699","https://openalex.org/W2051224630","https://openalex.org/W2054226908","https://openalex.org/W2054652527","https://openalex.org/W2054727788","https://openalex.org/W2056886779","https://openalex.org/W2068225247","https://openalex.org/W2075827435","https://openalex.org/W2081178560","https://openalex.org/W2093044565","https://openalex.org/W2095595375","https://openalex.org/W2096689134","https://openalex.org/W2097273111","https://openalex.org/W2099459260","https://openalex.org/W2106704226","https://openalex.org/W2107608009","https://openalex.org/W2108178576","https://openalex.org/W2109293112","https://openalex.org/W2115278392","https://openalex.org/W2119022294","https://openalex.org/W2122812051","https://openalex.org/W2124351063","https://openalex.org/W2127713506","https://openalex.org/W2133956160","https://openalex.org/W2136194443","https://openalex.org/W2138193047","https://openalex.org/W2140780616","https://openalex.org/W2142755019","https://openalex.org/W2145385317","https://openalex.org/W2146892790","https://openalex.org/W2147594812","https://openalex.org/W2148723086","https://openalex.org/W2153432396","https://openalex.org/W2153452535","https://openalex.org/W2153914034","https://openalex.org/W2160265768","https://openalex.org/W2165140440","https://openalex.org/W2165618724","https://openalex.org/W2166453609","https://openalex.org/W2167719208","https://openalex.org/W2168909179","https://openalex.org/W2170298431","https://openalex.org/W2172055615","https://openalex.org/W2962767035","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W4237591666","https://openalex.org/W2053969879","https://openalex.org/W2082641564","https://openalex.org/W2107333779","https://openalex.org/W2790772971","https://openalex.org/W3108190435","https://openalex.org/W1964419640","https://openalex.org/W2004104099","https://openalex.org/W4225755477","https://openalex.org/W4211038523"],"abstract_inverted_index":{"Endogenous":[0],"retroviruses":[1],"(ERVs)":[2],"are":[3,55,91,119,137,147],"a":[4,34,87,98,101,180,198,224,240],"class":[5],"of":[6,37,43,83,86,218,227,239],"transposable":[7],"elements":[8],"found":[9],"in":[10,57,61,71,73,76,100,153,164,179,192,245],"all":[11,124],"vertebrate":[12],"genomes":[13,118],"that":[14,51,136,146,214,236],"contribute":[15],"substantially":[16],"to":[17,93,97,133,139,149,177],"genomic":[18,168],"functional":[19],"and":[20,40,104,143,145,156,170,211,222,252],"structural":[21],"diversity.":[22],"A":[23],"host":[24,88],"species":[25,193],"acquires":[26],"an":[27,30,38,131,184],"ERV":[28,65,74,84,96,111,167,174,189,229],"when":[29],"exogenous":[31],"retrovirus":[32,244],"infects":[33],"germ":[35],"cell":[36],"individual":[39],"becomes":[41],"part":[42],"the":[44,77,81,195,216],"genome":[45,103],"inherited":[46],"by":[47,112],"viable":[48],"progeny.":[49],"ERVs":[50],"colonized":[52],"ancestral":[53],"lineages":[54],"fixed":[56],"contemporary":[58,248],"species.":[59],"However,":[60,159],"some":[62],"extant":[63],"species,":[64,125],"colonization":[66,85],"is":[67,161,203],"ongoing,":[68],"which":[69,106],"results":[70],"variation":[72],"frequency":[75],"population.":[78,181],"To":[79],"study":[80],"consequences":[82],"genome,":[89],"methods":[90,210],"needed":[92],"assign":[94],"each":[95,110,172],"location":[99],"species\u2019":[102],"determine":[105],"individuals":[107,178,251],"have":[108],"acquired":[109],"descent.":[113],"Because":[114],"well":[115],"annotated":[116],"reference":[117,134,144,199],"not":[120],"widely":[121],"available":[122],"for":[123,187,197],"de":[126,207],"novo":[127,208],"clustering":[128,209],"approaches":[129],"provide":[130],"alternative":[132],"mapping":[135],"insensitive":[138],"differences":[140],"between":[141],"query":[142],"amenable":[148],"mobile":[150],"element":[151],"studies":[152],"both":[154,165],"model":[155],"non-model":[157],"organisms.":[158],"there":[160],"substantial":[162],"uncertainty":[163,217],"identifying":[166],"position":[169],"assigning":[171],"unique":[173],"integration":[175,190,230],"site":[176],"We":[182,234],"present":[183],"analysis":[185],"suitable":[186],"detecting":[188],"sites":[191,231],"without":[194],"need":[196],"genome.":[200],"Our":[201],"approach":[202],"based":[204],"on":[205],"improved":[206],"statistical":[212],"models":[213],"take":[215],"assignment":[219],"into":[220],"account":[221],"yield":[223],"probability":[225],"matrix":[226],"shared":[228],"among":[232,250],"individuals.":[233],"demonstrate":[235],"polymorphic":[237],"integrations":[238],"recently":[241],"identified":[242],"endogenous":[243],"deer":[246],"reflect":[247],"relationships":[249],"populations.":[253]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
