{"id":"https://openalex.org/W4404074797","doi":"https://doi.org/10.3390/computation12110222","title":"Advanced Computational Pipeline for FAK Inhibitor Discovery: Combining Multiple Docking Methods with MD and QSAR for Cancer Therapy","display_name":"Advanced Computational Pipeline for FAK Inhibitor Discovery: Combining Multiple Docking Methods with MD and QSAR for Cancer Therapy","publication_year":2024,"publication_date":"2024-11-04","ids":{"openalex":"https://openalex.org/W4404074797","doi":"https://doi.org/10.3390/computation12110222"},"language":"en","primary_location":{"id":"doi:10.3390/computation12110222","is_oa":true,"landing_page_url":"https://doi.org/10.3390/computation12110222","pdf_url":"https://www.mdpi.com/2079-3197/12/11/222/pdf?version=1730736102","source":{"id":"https://openalex.org/S2738402919","display_name":"Computation","issn_l":"2079-3197","issn":["2079-3197"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computation","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2079-3197/12/11/222/pdf?version=1730736102","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066223503","display_name":"P\u0131nar Si\u0307yah","orcid":"https://orcid.org/0000-0003-1192-9416"},"institutions":[{"id":"https://openalex.org/I128277893","display_name":"Bah\u00e7e\u015fehir University","ror":"https://ror.org/00yze4d93","country_code":"TR","type":"education","lineage":["https://openalex.org/I128277893"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Pinar Siyah","raw_affiliation_strings":["Department of Biochemistry, School of Pharmacy, Bahcesehir University, 34349 Istanbul, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, School of Pharmacy, Bahcesehir University, 34349 Istanbul, Turkey","institution_ids":["https://openalex.org/I128277893"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5066223503"],"corresponding_institution_ids":["https://openalex.org/I128277893"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":0.2437,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.5947229,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"12","issue":"11","first_page":"222","last_page":"222"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/quantitative-structure\u2013activity-relationship","display_name":"Quantitative structure\u2013activity relationship","score":0.7964379787445068},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.7316163778305054},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.614473283290863},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5177892446517944},{"id":"https://openalex.org/keywords/cancer-therapy","display_name":"Cancer therapy","score":0.4129159450531006},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4102497398853302},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37720075249671936},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3631013035774231},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2614714205265045},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2603222727775574},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.13368791341781616},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12400075793266296}],"concepts":[{"id":"https://openalex.org/C164126121","wikidata":"https://www.wikidata.org/wiki/Q766383","display_name":"Quantitative structure\u2013activity relationship","level":2,"score":0.7964379787445068},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.7316163778305054},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.614473283290863},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5177892446517944},{"id":"https://openalex.org/C2983331546","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer therapy","level":3,"score":0.4129159450531006},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4102497398853302},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37720075249671936},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3631013035774231},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2614714205265045},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2603222727775574},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.13368791341781616},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12400075793266296},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3390/computation12110222","is_oa":true,"landing_page_url":"https://doi.org/10.3390/computation12110222","pdf_url":"https://www.mdpi.com/2079-3197/12/11/222/pdf?version=1730736102","source":{"id":"https://openalex.org/S2738402919","display_name":"Computation","issn_l":"2079-3197","issn":["2079-3197"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computation","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:2b5b6233e6a34604963d03760b2e5ab6","is_oa":true,"landing_page_url":"https://doaj.org/article/2b5b6233e6a34604963d03760b2e5ab6","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computation, Vol 12, Iss 11, p 222 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/computation12110222","is_oa":true,"landing_page_url":"https://doi.org/10.3390/computation12110222","pdf_url":"https://www.mdpi.com/2079-3197/12/11/222/pdf?version=1730736102","source":{"id":"https://openalex.org/S2738402919","display_name":"Computation","issn_l":"2079-3197","issn":["2079-3197"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computation","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.8199999928474426,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404074797.pdf","grobid_xml":"https://content.openalex.org/works/W4404074797.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W1941251942","https://openalex.org/W1973129764","https://openalex.org/W1985531875","https://openalex.org/W1991817696","https://openalex.org/W1993714996","https://openalex.org/W2006121622","https://openalex.org/W2017975008","https://openalex.org/W2024534768","https://openalex.org/W2027423337","https://openalex.org/W2076790509","https://openalex.org/W2091689893","https://openalex.org/W2108745864","https://openalex.org/W2121493901","https://openalex.org/W2135610661","https://openalex.org/W2151928685","https://openalex.org/W2305985369","https://openalex.org/W2313061444","https://openalex.org/W2581532541","https://openalex.org/W2613439480","https://openalex.org/W2704159227","https://openalex.org/W2766187515","https://openalex.org/W2782161847","https://openalex.org/W2789631280","https://openalex.org/W2808121302","https://openalex.org/W2808950125","https://openalex.org/W2889380110","https://openalex.org/W2912818999","https://openalex.org/W2977298994","https://openalex.org/W2981476918","https://openalex.org/W2983649157","https://openalex.org/W3034094834","https://openalex.org/W3107194182","https://openalex.org/W3128646645","https://openalex.org/W3129734173","https://openalex.org/W3164695541","https://openalex.org/W3179724822","https://openalex.org/W3187140786","https://openalex.org/W3188424903","https://openalex.org/W3191029699","https://openalex.org/W3197585147","https://openalex.org/W3207247025","https://openalex.org/W3215180146","https://openalex.org/W3215924723","https://openalex.org/W4200483851","https://openalex.org/W4211058791","https://openalex.org/W4221007206","https://openalex.org/W4225999376","https://openalex.org/W4247209357","https://openalex.org/W4285174980","https://openalex.org/W4292551128","https://openalex.org/W4295807258","https://openalex.org/W4307298103","https://openalex.org/W4308249260","https://openalex.org/W4313643933","https://openalex.org/W4319986615","https://openalex.org/W4321371594","https://openalex.org/W4387020789","https://openalex.org/W4387419262","https://openalex.org/W4387517602","https://openalex.org/W4387522738","https://openalex.org/W4389436764","https://openalex.org/W4391109485","https://openalex.org/W4391841791","https://openalex.org/W4392453547"],"related_works":["https://openalex.org/W2382340815","https://openalex.org/W1972650408","https://openalex.org/W2551736466","https://openalex.org/W1997566113","https://openalex.org/W3189652131","https://openalex.org/W2908740012","https://openalex.org/W1967793880","https://openalex.org/W2792066564","https://openalex.org/W1186905254","https://openalex.org/W2898703579"],"abstract_inverted_index":{"Synthetic":[0],"lethality,":[1],"involving":[2],"the":[3,52,81,84,121,144,163,168,173,180,194],"simultaneous":[4],"deactivation":[5],"of":[6,126,149,183],"two":[7],"genes,":[8],"disrupts":[9],"cellular":[10],"functions":[11],"or":[12],"induces":[13],"cell":[14],"death.":[15],"This":[16],"study":[17,65],"examines":[18],"its":[19],"role":[20],"in":[21,63],"cancer,":[22],"focusing":[23],"on":[24,80,162],"focal":[25],"adhesion":[26],"kinase":[27],"and":[28,73,99,109,132,155,172,178,189],"Neurofibromin":[29],"2.":[30],"Inhibiting":[31],"FAK,":[32],"crucial":[33],"for":[34,54,90],"synthetic":[35],"lethality":[36],"with":[37,68,124,147],"NF2/Merlin,":[38],"offers":[39],"significant":[40],"cancer":[41],"treatment":[42],"potential.":[43],"No":[44],"FAK":[45,60],"inhibitor":[46],"has":[47],"been":[48],"clinically":[49],"approved,":[50],"underscoring":[51],"need":[53],"new,":[55],"effective":[56],"inhibitors.":[57],"The":[58,113,136],"small-molecule":[59],"inhibitors":[61],"identified":[62,120,143],"this":[64],"show":[66],"promise,":[67],"SP":[69,88],"docking,":[70],"IFD,":[71],"QPLD,":[72],"MD":[74,119,142,176],"simulations":[75],"revealing":[76],"intricate":[77],"interactions.":[78],"Based":[79],"comprehensive":[82],"analysis,":[83],"MM/GBSA":[85],"scores":[86,125,148,165],"from":[87,139],"docking":[89,118,141,170],"amprenavir,":[91,186],"bosutinib,":[92],"ferric":[93,187],"derisomaltose,":[94,188],"flavin":[95],"adenine":[96],"dinucleotide,":[97],"lactulose,":[98],"tafluprost":[100],"were":[101],"determined":[102],"as":[103,193],"\u221272.81,":[104],"\u221271.84,":[105],"\u221276.70,":[106],"\u221269.09,":[107],"\u221274.86,":[108],"\u221265.77":[110],"kcal/mol,":[111,134,157],"respectively.":[112,135,158],"MMGBSA":[114,137,164],"results":[115,138],"following":[116],"IFD":[117],"top-performing":[122],"compounds":[123,146],"\u221284.0518,":[127],"\u221275.2591,":[128],"\u221271.8943,":[129],"\u221284.2638,":[130],"\u221256.3019,":[131],"\u221275.3873":[133],"QPLD":[140],"leading":[145],"\u221277.8486,":[150],"\u221269.5773,":[151],"\u221271.9171,":[152],"N/A,":[153],"\u221262.5716,":[154],"\u221266.8067":[156],"In":[159],"conclusion,":[160],"based":[161],"obtained":[166],"using":[167],"three":[169],"methods":[171],"100":[174],"ns":[175],"simulations,":[177],"considering":[179],"combined":[181],"evaluation":[182],"these":[184],"methods,":[185],"bosutinib":[190],"are":[191],"proposed":[192],"most":[195],"promising":[196],"candidates.":[197]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-11T06:11:40.159057","created_date":"2025-10-10T00:00:00"}
