{"id":"https://openalex.org/W4404542734","doi":"https://doi.org/10.3390/bdcc8110163","title":"Practical Design and Implementation of Virtual Chatbot Assistants for Bioinformatics Based on a NLU Open Framework","display_name":"Practical Design and Implementation of Virtual Chatbot Assistants for Bioinformatics Based on a NLU Open Framework","publication_year":2024,"publication_date":"2024-11-20","ids":{"openalex":"https://openalex.org/W4404542734","doi":"https://doi.org/10.3390/bdcc8110163"},"language":"en","primary_location":{"id":"doi:10.3390/bdcc8110163","is_oa":true,"landing_page_url":"https://doi.org/10.3390/bdcc8110163","pdf_url":null,"source":{"id":"https://openalex.org/S4210238752","display_name":"Big Data and Cognitive Computing","issn_l":"2504-2289","issn":["2504-2289"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data and Cognitive Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.3390/bdcc8110163","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033495493","display_name":"Aya Allah Elsayed","orcid":null},"institutions":[{"id":"https://openalex.org/I2801097182","display_name":"Parc Cient\u00edfic de la Universitat de Val\u00e8ncia","ror":"https://ror.org/04rb60x98","country_code":"ES","type":"education","lineage":["https://openalex.org/I2801097182"]},{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Aya Allah Elsayed","raw_affiliation_strings":["Biotechvana, Parc Cient\u00edfic Universitat de Val\u00e8ncia, 46980 Paterna, Spain","VRAIN, Universitat Polit\u00e8cnica de Val\u00e8ncia, Camino de Vera s/n, 46022 Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechvana, Parc Cient\u00edfic Universitat de Val\u00e8ncia, 46980 Paterna, Spain","institution_ids":["https://openalex.org/I2801097182"]},{"raw_affiliation_string":"VRAIN, Universitat Polit\u00e8cnica de Val\u00e8ncia, Camino de Vera s/n, 46022 Valencia, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020479896","display_name":"Ahmed Ibrahem Hafez","orcid":"https://orcid.org/0000-0002-2343-5029"},"institutions":[{"id":"https://openalex.org/I2801097182","display_name":"Parc Cient\u00edfic de la Universitat de Val\u00e8ncia","ror":"https://ror.org/04rb60x98","country_code":"ES","type":"education","lineage":["https://openalex.org/I2801097182"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ahmed Ibrahem Hafez","raw_affiliation_strings":["Biotechvana, Parc Cient\u00edfic Universitat de Val\u00e8ncia, 46980 Paterna, Spain"],"raw_orcid":"https://orcid.org/0000-0002-2343-5029","affiliations":[{"raw_affiliation_string":"Biotechvana, Parc Cient\u00edfic Universitat de Val\u00e8ncia, 46980 Paterna, Spain","institution_ids":["https://openalex.org/I2801097182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010056104","display_name":"Raquel Cepri\u00e1n","orcid":null},"institutions":[{"id":"https://openalex.org/I2801097182","display_name":"Parc Cient\u00edfic de la Universitat de Val\u00e8ncia","ror":"https://ror.org/04rb60x98","country_code":"ES","type":"education","lineage":["https://openalex.org/I2801097182"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Raquel Cepri\u00e1n","raw_affiliation_strings":["Biotechvana, Parc Cient\u00edfic Universitat de Val\u00e8ncia, 46980 Paterna, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechvana, Parc Cient\u00edfic Universitat de Val\u00e8ncia, 46980 Paterna, Spain","institution_ids":["https://openalex.org/I2801097182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046242263","display_name":"Gen\u00eds Mart\u00ednez","orcid":null},"institutions":[{"id":"https://openalex.org/I2801097182","display_name":"Parc Cient\u00edfic de la Universitat de Val\u00e8ncia","ror":"https://ror.org/04rb60x98","country_code":"ES","type":"education","lineage":["https://openalex.org/I2801097182"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Gen\u00eds Mart\u00ednez","raw_affiliation_strings":["Biotechvana, Parc Cient\u00edfic Universitat de Val\u00e8ncia, 46980 Paterna, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechvana, Parc Cient\u00edfic Universitat de Val\u00e8ncia, 46980 Paterna, Spain","institution_ids":["https://openalex.org/I2801097182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085967848","display_name":"Alejandro Granados","orcid":"https://orcid.org/0000-0002-2866-1324"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alejandro Granados","raw_affiliation_strings":["VRAIN, Universitat Polit\u00e8cnica de Val\u00e8ncia, Camino de Vera s/n, 46022 Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"VRAIN, Universitat Polit\u00e8cnica de Val\u00e8ncia, Camino de Vera s/n, 46022 Valencia, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035099533","display_name":"Beatriz Soriano","orcid":"https://orcid.org/0000-0002-8355-5911"},"institutions":[{"id":"https://openalex.org/I2801097182","display_name":"Parc Cient\u00edfic de la Universitat de Val\u00e8ncia","ror":"https://ror.org/04rb60x98","country_code":"ES","type":"education","lineage":["https://openalex.org/I2801097182"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Beatriz Soriano","raw_affiliation_strings":["Biotechvana, Parc Cient\u00edfic Universitat de Val\u00e8ncia, 46980 Paterna, Spain"],"raw_orcid":"https://orcid.org/0000-0002-8355-5911","affiliations":[{"raw_affiliation_string":"Biotechvana, Parc Cient\u00edfic Universitat de Val\u00e8ncia, 46980 Paterna, Spain","institution_ids":["https://openalex.org/I2801097182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037439879","display_name":"Carlos Llor\u00e9ns","orcid":"https://orcid.org/0000-0003-1402-4743"},"institutions":[{"id":"https://openalex.org/I2801097182","display_name":"Parc Cient\u00edfic de la Universitat de Val\u00e8ncia","ror":"https://ror.org/04rb60x98","country_code":"ES","type":"education","lineage":["https://openalex.org/I2801097182"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carlos Llorens","raw_affiliation_strings":["Biotechvana, Parc Cient\u00edfic Universitat de Val\u00e8ncia, 46980 Paterna, Spain"],"raw_orcid":"https://orcid.org/0000-0003-1402-4743","affiliations":[{"raw_affiliation_string":"Biotechvana, Parc Cient\u00edfic Universitat de Val\u00e8ncia, 46980 Paterna, Spain","institution_ids":["https://openalex.org/I2801097182"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013960593","display_name":"Jos\u00e9 M. Sempere","orcid":"https://orcid.org/0000-0003-2393-9224"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jos\u00e9 M. Sempere","raw_affiliation_strings":["VRAIN, Universitat Polit\u00e8cnica de Val\u00e8ncia, Camino de Vera s/n, 46022 Valencia, Spain"],"raw_orcid":"https://orcid.org/0000-0003-2393-9224","affiliations":[{"raw_affiliation_string":"VRAIN, Universitat Polit\u00e8cnica de Val\u00e8ncia, Camino de Vera s/n, 46022 Valencia, Spain","institution_ids":["https://openalex.org/I60053951"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5013960593","https://openalex.org/A5033495493"],"corresponding_institution_ids":["https://openalex.org/I2801097182","https://openalex.org/I60053951"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":0.3147,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.67067864,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"8","issue":"11","first_page":"163","last_page":"163"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12128","display_name":"AI in Service Interactions","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12128","display_name":"AI in Service Interactions","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9133999943733215,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chatbot","display_name":"Chatbot","score":0.9142900705337524},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7663363218307495},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7495579719543457},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.7286206483840942},{"id":"https://openalex.org/keywords/bridge","display_name":"Bridge (graph theory)","score":0.6395791172981262},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5473482608795166},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.4339137673377991},{"id":"https://openalex.org/keywords/natural-language-understanding","display_name":"Natural language understanding","score":0.42414551973342896},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.35310420393943787},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1701224148273468},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.11140355467796326}],"concepts":[{"id":"https://openalex.org/C2779041454","wikidata":"https://www.wikidata.org/wiki/Q870780","display_name":"Chatbot","level":2,"score":0.9142900705337524},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7663363218307495},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7495579719543457},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.7286206483840942},{"id":"https://openalex.org/C100776233","wikidata":"https://www.wikidata.org/wiki/Q2532492","display_name":"Bridge (graph theory)","level":2,"score":0.6395791172981262},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5473482608795166},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.4339137673377991},{"id":"https://openalex.org/C2779439875","wikidata":"https://www.wikidata.org/wiki/Q1078276","display_name":"Natural language understanding","level":3,"score":0.42414551973342896},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.35310420393943787},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1701224148273468},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.11140355467796326},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3390/bdcc8110163","is_oa":true,"landing_page_url":"https://doi.org/10.3390/bdcc8110163","pdf_url":null,"source":{"id":"https://openalex.org/S4210238752","display_name":"Big Data and Cognitive Computing","issn_l":"2504-2289","issn":["2504-2289"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data and Cognitive Computing","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:741e830a368c495fb082d1e2f142ddc7","is_oa":true,"landing_page_url":"https://doaj.org/article/741e830a368c495fb082d1e2f142ddc7","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Big Data and Cognitive Computing, Vol 8, Iss 11, p 163 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/bdcc8110163","is_oa":true,"landing_page_url":"https://doi.org/10.3390/bdcc8110163","pdf_url":null,"source":{"id":"https://openalex.org/S4210238752","display_name":"Big Data and Cognitive Computing","issn_l":"2504-2289","issn":["2504-2289"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data and Cognitive Computing","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.6299999952316284}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1969739015","https://openalex.org/W1977080779","https://openalex.org/W2006338143","https://openalex.org/W2013469333","https://openalex.org/W2069416257","https://openalex.org/W2110417468","https://openalex.org/W2119180969","https://openalex.org/W2130754716","https://openalex.org/W2141894068","https://openalex.org/W2148319892","https://openalex.org/W2605897695","https://openalex.org/W2766771288","https://openalex.org/W2772337086","https://openalex.org/W2891177506","https://openalex.org/W2900107703","https://openalex.org/W2922701384","https://openalex.org/W2953377113","https://openalex.org/W2972197410","https://openalex.org/W3029168934","https://openalex.org/W3185181255","https://openalex.org/W4205201623","https://openalex.org/W4250740994","https://openalex.org/W4284890697","https://openalex.org/W4285815276","https://openalex.org/W4317624074","https://openalex.org/W6767185534","https://openalex.org/W6839402905"],"related_works":["https://openalex.org/W2750213978","https://openalex.org/W3200957432","https://openalex.org/W4212804285","https://openalex.org/W4223576922","https://openalex.org/W4390449165","https://openalex.org/W4386790411","https://openalex.org/W4289529888","https://openalex.org/W4397050657","https://openalex.org/W2955076648","https://openalex.org/W4288263119"],"abstract_inverted_index":{"In":[0],"this":[1,26],"work,":[2],"we":[3],"describe":[4],"the":[5,21,34,111,118,131],"implementation":[6],"of":[7,10,36,133],"an":[8,85],"infrastructure":[9,27,58],"conversational":[11],"chatbots":[12,76],"by":[13],"using":[14],"natural":[15,90],"language":[16,91],"processing":[17],"and":[18,50,52,79,94,102,121,130],"training":[19],"within":[20],"Rasa":[22],"framework.":[23],"We":[24],"use":[25],"to":[28,63,98,104,113],"create":[29],"a":[30,37,43,68,126],"chatbot":[31,66,112,124],"assistant":[32],"for":[33,47,67],"users":[35,129],"bioinformatics":[38,134],"suite.":[39],"This":[40],"suite":[41],"provides":[42,125],"customized":[44],"interface":[45],"solution":[46],"omic":[48],"pipelines":[49,120],"workflows,":[51],"it":[53],"is":[54],"named":[55],"GPRO.":[56],"The":[57,74,123],"has":[59],"also":[60],"been":[61,82],"used":[62],"build":[64],"another":[65],"Laboratory":[69],"Information":[70],"Management":[71],"System":[72],"(LIMS).":[73],"two":[75],"(namely,":[77],"Genie":[78],"Abu)":[80],"have":[81],"built":[83],"on":[84,116],"open":[86],"framework":[87],"that":[88],"uses":[89],"understanding":[92],"(NLU)":[93],"machine":[95],"learning":[96],"techniques":[97],"understand":[99],"user":[100],"queries":[101],"respond":[103],"them.":[105],"Users":[106],"can":[107],"seamlessly":[108],"interact":[109],"with":[110],"receive":[114],"support":[115],"navigating":[117],"GPRO":[119],"workflows.":[122],"bridge":[127],"between":[128],"wealth":[132],"knowledge":[135],"available":[136],"online.":[137]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}