{"id":"https://openalex.org/W4396904957","doi":"https://doi.org/10.3390/bdcc8050047","title":"International Classification of Diseases Prediction from MIMIIC-III Clinical Text Using Pre-Trained ClinicalBERT and NLP Deep Learning Models Achieving State of the Art","display_name":"International Classification of Diseases Prediction from MIMIIC-III Clinical Text Using Pre-Trained ClinicalBERT and NLP Deep Learning Models Achieving State of the Art","publication_year":2024,"publication_date":"2024-05-10","ids":{"openalex":"https://openalex.org/W4396904957","doi":"https://doi.org/10.3390/bdcc8050047"},"language":"en","primary_location":{"id":"doi:10.3390/bdcc8050047","is_oa":true,"landing_page_url":"https://doi.org/10.3390/bdcc8050047","pdf_url":"https://www.mdpi.com/2504-2289/8/5/47/pdf?version=1715581252","source":{"id":"https://openalex.org/S4210238752","display_name":"Big Data and Cognitive Computing","issn_l":"2504-2289","issn":["2504-2289"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data and Cognitive Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2504-2289/8/5/47/pdf?version=1715581252","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5093787739","display_name":"Ilyas Aden","orcid":"https://orcid.org/0000-0002-8463-4443"},"institutions":[{"id":"https://openalex.org/I180825142","display_name":"City, University of London","ror":"https://ror.org/04489at23","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I180825142"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Ilyas Aden","raw_affiliation_strings":["Department of Computer Science, City, University of London, Northampton Square, London EC1V 0HB, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City, University of London, Northampton Square, London EC1V 0HB, UK","institution_ids":["https://openalex.org/I180825142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064657398","display_name":"Chris Child","orcid":"https://orcid.org/0000-0001-5425-2308"},"institutions":[{"id":"https://openalex.org/I180825142","display_name":"City, University of London","ror":"https://ror.org/04489at23","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I180825142"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christopher H. T. Child","raw_affiliation_strings":["Department of Computer Science, City, University of London, Northampton Square, London EC1V 0HB, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City, University of London, Northampton Square, London EC1V 0HB, UK","institution_ids":["https://openalex.org/I180825142"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083253222","display_name":"Constantino Carlos Reyes\u2010Aldasoro","orcid":"https://orcid.org/0000-0002-9466-2018"},"institutions":[{"id":"https://openalex.org/I180825142","display_name":"City, University of London","ror":"https://ror.org/04489at23","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I180825142"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Constantino Carlos Reyes-Aldasoro","raw_affiliation_strings":["Department of Computer Science, City, University of London, Northampton Square, London EC1V 0HB, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City, University of London, Northampton Square, London EC1V 0HB, UK","institution_ids":["https://openalex.org/I180825142"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5093787739"],"corresponding_institution_ids":["https://openalex.org/I180825142"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":3.6415,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.93576834,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"8","issue":"5","first_page":"47","last_page":"47"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11396","display_name":"Artificial Intelligence in Healthcare","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.710172712802887},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5763919949531555},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5624048709869385},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.503476083278656},{"id":"https://openalex.org/keywords/state","display_name":"State (computer science)","score":0.41622766852378845},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34977301955223083}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.710172712802887},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5763919949531555},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5624048709869385},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.503476083278656},{"id":"https://openalex.org/C48103436","wikidata":"https://www.wikidata.org/wiki/Q599031","display_name":"State (computer science)","level":2,"score":0.41622766852378845},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34977301955223083},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3390/bdcc8050047","is_oa":true,"landing_page_url":"https://doi.org/10.3390/bdcc8050047","pdf_url":"https://www.mdpi.com/2504-2289/8/5/47/pdf?version=1715581252","source":{"id":"https://openalex.org/S4210238752","display_name":"Big Data and Cognitive Computing","issn_l":"2504-2289","issn":["2504-2289"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data and Cognitive Computing","raw_type":"journal-article"},{"id":"pmh:oai:openaccess.city.ac.uk:33037","is_oa":true,"landing_page_url":"https://openaccess.city.ac.uk/view/creators_id/c=2Echild.html>","pdf_url":"https://openaccess.city.ac.uk/id/eprint/33037/1/BDCC-08-00047-v2.pdf","source":{"id":"https://openalex.org/S4306401940","display_name":"City Research Online (City University London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I180825142","host_organization_name":"City, University of London","host_organization_lineage":["https://openalex.org/I180825142"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:doaj.org/article:6f1a5f983b8b49e4b8e98b1916fd2c26","is_oa":true,"landing_page_url":"https://doaj.org/article/6f1a5f983b8b49e4b8e98b1916fd2c26","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Big Data and Cognitive Computing, Vol 8, Iss 5, p 47 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/bdcc8050047","is_oa":true,"landing_page_url":"https://doi.org/10.3390/bdcc8050047","pdf_url":"https://www.mdpi.com/2504-2289/8/5/47/pdf?version=1715581252","source":{"id":"https://openalex.org/S4210238752","display_name":"Big Data and Cognitive Computing","issn_l":"2504-2289","issn":["2504-2289"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data and Cognitive Computing","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4396904957.pdf"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W2786554073","https://openalex.org/W2803920401","https://openalex.org/W2892109811","https://openalex.org/W2963716420","https://openalex.org/W2964142373","https://openalex.org/W3007587603","https://openalex.org/W3046293795","https://openalex.org/W3084487255","https://openalex.org/W3094581225","https://openalex.org/W3111549438","https://openalex.org/W3133696297","https://openalex.org/W3175985785","https://openalex.org/W3210002128","https://openalex.org/W4366835582","https://openalex.org/W4383535867","https://openalex.org/W6755754581","https://openalex.org/W6790690058"],"related_works":["https://openalex.org/W2731899572","https://openalex.org/W2961085424","https://openalex.org/W3215138031","https://openalex.org/W4306674287","https://openalex.org/W3009238340","https://openalex.org/W4321369474","https://openalex.org/W4360585206","https://openalex.org/W4285208911","https://openalex.org/W3046775127","https://openalex.org/W3082895349"],"abstract_inverted_index":{"The":[0,278],"International":[1],"Classification":[2],"of":[3,20,27,91,151,189,211,229,245,254,262,303],"Diseases":[4],"(ICD)":[5],"serves":[6],"as":[7,104,118,203,205],"a":[8,33,41,65,84,141],"widely":[9],"employed":[10],"framework":[11],"for":[12,44,79],"assigning":[13],"diagnosis":[14,98,180],"codes":[15,23,46,99,181],"to":[16,39,67,196,280],"electronic":[17],"health":[18],"records":[19],"patients.":[21],"These":[22,256],"facilitate":[24],"the":[25,49,72,75,136,149,158,164,174,183,215,234,259,300],"encapsulation":[26],"diagnoses":[28,282],"and":[29,59,87,107,131,177,191,201],"procedures":[30],"conducted":[31,155],"during":[32],"patient\u2019s":[34],"hospitalisation.":[35],"This":[36],"study":[37],"aims":[38],"devise":[40],"predictive":[42],"model":[43,143,221],"ICD":[45],"based":[47],"on":[48],"MIMIC-III":[50,73,184],"clinical":[51,137,285],"text":[52],"dataset.":[53],"Leveraging":[54],"natural":[55],"language":[56],"processing":[57],"techniques":[58],"deep":[60,114,263],"learning":[61,115,264,269],"architectures,":[62],"we":[63,154],"constructed":[64],"pipeline":[66],"distill":[68],"pertinent":[69],"information":[70],"from":[71,100,144,284],"dataset:":[74],"Medical":[76],"Information":[77],"Mart":[78],"Intensive":[80],"Care":[81],"III":[82],"(MIMIC-III),":[83],"sizable,":[85],"de-identified,":[86],"publicly":[88],"accessible":[89],"repository":[90],"medical":[92],"records.":[93],"Our":[94,306],"method":[95,249],"entails":[96],"predicting":[97,173,214,233],"unstructured":[101],"data,":[102],"such":[103,117],"discharge":[105,159],"summaries":[106],"notes":[108,286],"encompassing":[109],"symptoms.":[110],"We":[111],"used":[112],"state-of-the-art":[113],"algorithms,":[116],"recurrent":[119],"neural":[120],"networks":[121],"(RNNs),":[122],"long":[123],"short-term":[124],"memory":[125],"(LSTM)":[126],"networks,":[127],"bidirectional":[128],"LSTM":[129],"(BiLSTM)":[130],"BERT":[132,165],"models":[133,265],"after":[134],"tokenizing":[135],"test":[138],"with":[139,225],"Bio-ClinicalBERT,":[140],"pre-trained":[142],"Hugging":[145],"Face.":[146],"To":[147],"evaluate":[148],"efficacy":[150],"our":[152,167,220,248,276],"approach,":[153],"experiments":[156],"utilizing":[157],"dataset":[160],"within":[161,182],"MIMIC-III.":[162],"Employing":[163],"model,":[166],"methodology":[168],"exhibited":[169],"commendable":[170],"accuracy":[171],"in":[172,213,232,271,289,294],"top":[175,178,216,235],"10":[176,217],"50":[179,236],"dataset,":[185],"achieving":[186],"average":[187],"accuracies":[188],"88%":[190],"80%,":[192],"respectively.":[193],"In":[194],"comparison":[195],"recent":[197],"studies":[198],"by":[199],"Biseda":[200],"Kerang,":[202],"well":[204],"Gangavarapu,":[206],"which":[207],"reported":[208],"F1":[209,227,243,252],"scores":[210],"0.72":[212],"ICD-10":[218,237],"codes,":[219,238],"demonstrated":[222],"better":[223,260],"performance,":[224],"an":[226,242,251],"score":[228,244,253],"0.87.":[230],"Similarly,":[231],"previous":[239],"research":[240],"achieved":[241],"0.75,":[246],"whereas":[247],"attained":[250],"0.81.":[255],"results":[257],"underscore":[258],"performance":[261],"over":[266],"conventional":[267,301],"machine":[268],"approaches":[270],"this":[272],"domain,":[273],"thus":[274],"validating":[275],"findings.":[277],"ability":[279],"predict":[281],"early":[283],"holds":[287],"promise":[288],"assisting":[290],"doctors":[291],"or":[292],"physicians":[293],"determining":[295],"effective":[296],"treatments,":[297],"thereby":[298],"reshaping":[299],"paradigm":[302],"diagnosis-then-treatment":[304],"care.":[305],"code":[307],"is":[308],"available":[309],"online.":[310]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3}],"updated_date":"2026-03-09T08:58:05.943551","created_date":"2025-10-10T00:00:00"}
