{"id":"https://openalex.org/W2796360334","doi":"https://doi.org/10.3390/a6040805","title":"PMS6MC: A Multicore Algorithm for Motif Discovery","display_name":"PMS6MC: A Multicore Algorithm for Motif Discovery","publication_year":2013,"publication_date":"2013-11-18","ids":{"openalex":"https://openalex.org/W2796360334","doi":"https://doi.org/10.3390/a6040805","mag":"2796360334","pmid":"https://pubmed.ncbi.nlm.nih.gov/25309700"},"language":"en","primary_location":{"id":"doi:10.3390/a6040805","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a6040805","pdf_url":"https://www.mdpi.com/1999-4893/6/4/805/pdf?version=1384790921","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1999-4893/6/4/805/pdf?version=1384790921","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009025370","display_name":"Shibdas Bandyopadhyay","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Shibdas Bandyopadhyay","raw_affiliation_strings":["VMware Inc, 3401 Hillview Avenue, Palo Alto, CA 94304, USA"],"affiliations":[{"raw_affiliation_string":"VMware Inc, 3401 Hillview Avenue, Palo Alto, CA 94304, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070824596","display_name":"Sartaj Sahni","orcid":"https://orcid.org/0000-0002-8129-1676"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sartaj Sahni","raw_affiliation_strings":["Department of CISE, University of Florida, Gainesville, FL 32611, USA"],"affiliations":[{"raw_affiliation_string":"Department of CISE, University of Florida, Gainesville, FL 32611, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034177039","display_name":"Sanguthevar Rajasekaran","orcid":null},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sanguthevar Rajasekaran","raw_affiliation_strings":["Department of CSE, University of Connecticut, Storrs, CT 06269, USA"],"affiliations":[{"raw_affiliation_string":"Department of CSE, University of Connecticut, Storrs, CT 06269, USA","institution_ids":["https://openalex.org/I140172145"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5009025370"],"corresponding_institution_ids":[],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":0.9963,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.84792875,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"6","issue":"4","first_page":"805","last_page":"823"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9624000191688538,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multi-core-processor","display_name":"Multi-core processor","score":0.8069882392883301},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6901030540466309},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.6568235754966736},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.6564459800720215},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.518124520778656},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.44527748227119446},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.34594160318374634},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.10428208112716675}],"concepts":[{"id":"https://openalex.org/C78766204","wikidata":"https://www.wikidata.org/wiki/Q555032","display_name":"Multi-core processor","level":2,"score":0.8069882392883301},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6901030540466309},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.6568235754966736},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.6564459800720215},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.518124520778656},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.44527748227119446},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.34594160318374634},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.10428208112716675},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3390/a6040805","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a6040805","pdf_url":"https://www.mdpi.com/1999-4893/6/4/805/pdf?version=1384790921","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},{"id":"pmid:25309700","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25309700","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":null},{"id":"pmh:oai:doaj.org/article:5cb2223f74474e9fb8fd1174471b443e","is_oa":true,"landing_page_url":"https://doaj.org/article/5cb2223f74474e9fb8fd1174471b443e","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms, Vol 6, Iss 4, Pp 805-823 (2013)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:3162922","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4193679","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/a6040805","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a6040805","pdf_url":"https://www.mdpi.com/1999-4893/6/4/805/pdf?version=1384790921","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2796360334.pdf","grobid_xml":"https://content.openalex.org/works/W2796360334.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1486659038","https://openalex.org/W1580213736","https://openalex.org/W1998300401","https://openalex.org/W2003967338","https://openalex.org/W2023863508","https://openalex.org/W2024349287","https://openalex.org/W2038555630","https://openalex.org/W2041754606","https://openalex.org/W2050758824","https://openalex.org/W2062088872","https://openalex.org/W2070310544","https://openalex.org/W2089026820","https://openalex.org/W2098843276","https://openalex.org/W2103667109","https://openalex.org/W2106304690","https://openalex.org/W2115273783","https://openalex.org/W2117950809","https://openalex.org/W2128091972","https://openalex.org/W2145091349","https://openalex.org/W2155976638","https://openalex.org/W2162114340","https://openalex.org/W2162665632","https://openalex.org/W6634323537"],"related_works":["https://openalex.org/W2317245370","https://openalex.org/W198851386","https://openalex.org/W1980160788","https://openalex.org/W2030310580","https://openalex.org/W947442053","https://openalex.org/W2148915962","https://openalex.org/W4313433561","https://openalex.org/W2283866686","https://openalex.org/W4287182096","https://openalex.org/W27867058"],"abstract_inverted_index":{"We":[0,94],"develop":[1],"an":[2,90],"efficient":[3],"multicore":[4,66],"algorithm,":[5],"PMS6MC,":[6],"for":[7,52,74,84,108],"the":[8,48,75,85],"(<i>l,":[9],"d</i>)-motif":[10],"discovery":[11,54],"problem":[12],"in":[13,26,55],"which":[14,45],"we":[15],"are":[16],"to":[17,61,79,100],"find":[18],"all":[19],"strings":[20,34],"of":[21,29,33,72,82],"length":[22],"<i>l</i>":[23],"that":[24,96],"appear":[25],"every":[27],"string":[28],"a":[30,70,80],"given":[31],"set":[32],"with":[35],"at":[36],"most":[37],"<i>d</i>":[38],"mismatches.":[39],"PMS6MC":[40,97],"is":[41,46,98],"based":[42],"on":[43,89,111],"PMS6,":[44,62],"currently":[47],"fastest":[49],"single-core":[50],"algorithm":[51,67],"motif":[53,109],"large":[56,112],"instances.":[57,113],"The":[58],"speedup,":[59],"relative":[60],"attained":[63],"by":[64],"our":[65],"ranges":[68],"from":[69],"high":[71],"6.62":[73],"(17,6)":[76],"challenging":[77,87],"instances":[78,88],"low":[81],"2.75":[83],"(13,4)":[86],"Intel":[91],"6-core":[92],"system.":[93],"estimate":[95],"2":[99],"4":[101],"times":[102],"faster":[103],"than":[104],"other":[105],"parallel":[106],"algorithms":[107],"search":[110]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
