{"id":"https://openalex.org/W1967954266","doi":"https://doi.org/10.3390/a2010429","title":"Protein-Protein Interaction Analysis by Docking","display_name":"Protein-Protein Interaction Analysis by Docking","publication_year":2009,"publication_date":"2009-03-10","ids":{"openalex":"https://openalex.org/W1967954266","doi":"https://doi.org/10.3390/a2010429","mag":"1967954266"},"language":"en","primary_location":{"id":"doi:10.3390/a2010429","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a2010429","pdf_url":"https://www.mdpi.com/1999-4893/2/1/429/pdf?version=1236676619","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1999-4893/2/1/429/pdf?version=1236676619","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070591502","display_name":"Florian Fink","orcid":null},"institutions":[{"id":"https://openalex.org/I60668342","display_name":"University of Regensburg","ror":"https://ror.org/01eezs655","country_code":"DE","type":"education","lineage":["https://openalex.org/I60668342"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Florian Fink","raw_affiliation_strings":["Institute of Functional Genomics, University of Regensburg, Josef-Engert-Strasse 9, D-93053 Regensburg, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Functional Genomics, University of Regensburg, Josef-Engert-Strasse 9, D-93053 Regensburg, Germany","institution_ids":["https://openalex.org/I60668342"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045125542","display_name":"Stephan Ederer","orcid":null},"institutions":[{"id":"https://openalex.org/I60668342","display_name":"University of Regensburg","ror":"https://ror.org/01eezs655","country_code":"DE","type":"education","lineage":["https://openalex.org/I60668342"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stephan Ederer","raw_affiliation_strings":["Institute of Functional Genomics, University of Regensburg, Josef-Engert-Strasse 9, D-93053 Regensburg, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Functional Genomics, University of Regensburg, Josef-Engert-Strasse 9, D-93053 Regensburg, Germany","institution_ids":["https://openalex.org/I60668342"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002628989","display_name":"Wolfram Gronwald","orcid":"https://orcid.org/0000-0003-3646-0060"},"institutions":[{"id":"https://openalex.org/I60668342","display_name":"University of Regensburg","ror":"https://ror.org/01eezs655","country_code":"DE","type":"education","lineage":["https://openalex.org/I60668342"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Wolfram Gronwald","raw_affiliation_strings":["Institute of Functional Genomics, University of Regensburg, Josef-Engert-Strasse 9, D-93053 Regensburg, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Functional Genomics, University of Regensburg, Josef-Engert-Strasse 9, D-93053 Regensburg, Germany","institution_ids":["https://openalex.org/I60668342"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5002628989","https://openalex.org/A5070591502"],"corresponding_institution_ids":["https://openalex.org/I60668342"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.079298,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"2","issue":"1","first_page":"429","last_page":"436"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.792294979095459},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.6433017253875732},{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.5693712830543518},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5107629299163818},{"id":"https://openalex.org/keywords/intermolecular-force","display_name":"Intermolecular force","score":0.43560653924942017},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4144248068332672},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4136536419391632},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3774535059928894},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.2806689441204071},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2535661458969116},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.20158150792121887},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18014582991600037},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.07796832919120789}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.792294979095459},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.6433017253875732},{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.5693712830543518},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5107629299163818},{"id":"https://openalex.org/C166950319","wikidata":"https://www.wikidata.org/wiki/Q245031","display_name":"Intermolecular force","level":3,"score":0.43560653924942017},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4144248068332672},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4136536419391632},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3774535059928894},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.2806689441204071},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2535661458969116},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.20158150792121887},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18014582991600037},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.07796832919120789},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3390/a2010429","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a2010429","pdf_url":"https://www.mdpi.com/1999-4893/2/1/429/pdf?version=1236676619","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},{"id":"pmh:oai:epub.uni-regensburg.de:30673","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401229","display_name":"University of Regensburg Publication Server (University of Regensburg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60668342","host_organization_name":"University of Regensburg","host_organization_lineage":["https://openalex.org/I60668342"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:e009f2c16b384f2283f79ae97b1db8f9","is_oa":true,"landing_page_url":"https://doaj.org/article/e009f2c16b384f2283f79ae97b1db8f9","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms, Vol 2, Iss 1, Pp 429-436 (2009)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/a2010429","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a2010429","pdf_url":"https://www.mdpi.com/1999-4893/2/1/429/pdf?version=1236676619","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1967954266.pdf","grobid_xml":"https://content.openalex.org/works/W1967954266.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1974156712","https://openalex.org/W2014744153","https://openalex.org/W2073574973","https://openalex.org/W2074104861","https://openalex.org/W2083978969","https://openalex.org/W2105438341","https://openalex.org/W2113654464","https://openalex.org/W2125936043","https://openalex.org/W2128039232","https://openalex.org/W2153983456","https://openalex.org/W2165206687"],"related_works":["https://openalex.org/W1581147483","https://openalex.org/W2329052364","https://openalex.org/W4310018788","https://openalex.org/W2417162538","https://openalex.org/W2162967120","https://openalex.org/W1567411871","https://openalex.org/W2301625241","https://openalex.org/W2072180710","https://openalex.org/W2794807012","https://openalex.org/W2553094381"],"abstract_inverted_index":{"Based":[0],"on":[1],"a":[2,9],"protein-protein":[3,15],"docking":[4],"approach":[5],"we":[6],"have":[7],"developed":[8],"procedure":[10],"to":[11,37],"verify":[12],"or":[13],"falsify":[14],"interactions":[16],"that":[17,52],"were":[18],"proposed":[19],"by":[20],"other":[21],"methods":[22],"such":[23,41],"as":[24,42],"yeast-2-hybrid":[25],"assays.":[26],"Our":[27],"method":[28],"currently":[29],"utilizes":[30],"intermolecular":[31],"energies":[32],"but":[33],"can":[34],"be":[35],"expanded":[36],"incorporate":[38],"additional":[39],"terms":[40],"amino":[43],"acid":[44],"based":[45],"pair-potentials.":[46],"We":[47],"show":[48],"some":[49],"early":[50],"results":[51],"demonstrate":[53],"the":[54],"general":[55],"applicability":[56],"of":[57],"our":[58],"approach.":[59]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
