{"id":"https://openalex.org/W4413930158","doi":"https://doi.org/10.3390/a18090545","title":"Agentic RAG-Driven Multi-Omics Analysis for PI3K/AKT Pathway Deregulation in Precision Medicine","display_name":"Agentic RAG-Driven Multi-Omics Analysis for PI3K/AKT Pathway Deregulation in Precision Medicine","publication_year":2025,"publication_date":"2025-08-30","ids":{"openalex":"https://openalex.org/W4413930158","doi":"https://doi.org/10.3390/a18090545"},"language":"en","primary_location":{"id":"doi:10.3390/a18090545","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a18090545","pdf_url":"https://www.mdpi.com/1999-4893/18/9/545/pdf?version=1756549939","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1999-4893/18/9/545/pdf?version=1756549939","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022507170","display_name":"Micheal Olaolu Arowolo","orcid":"https://orcid.org/0000-0002-9418-5346"},"institutions":[{"id":"https://openalex.org/I169251466","display_name":"Xavier University of Louisiana","ror":"https://ror.org/0085d9t86","country_code":"US","type":"education","lineage":["https://openalex.org/I169251466"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Micheal Olaolu Arowolo","raw_affiliation_strings":["Department of Public Health Sciences, Health Informatics Program, Xavier University of Louisiana, New Orleans, LA 70461, USA"],"raw_orcid":"https://orcid.org/0000-0002-9418-5346","affiliations":[{"raw_affiliation_string":"Department of Public Health Sciences, Health Informatics Program, Xavier University of Louisiana, New Orleans, LA 70461, USA","institution_ids":["https://openalex.org/I169251466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083048355","display_name":"Sulaiman Olaniyi Abdulsalam","orcid":"https://orcid.org/0000-0001-9139-6386"},"institutions":[{"id":"https://openalex.org/I98243723","display_name":"Kwara State University","ror":"https://ror.org/05np2xn95","country_code":"NG","type":"education","lineage":["https://openalex.org/I98243723"]}],"countries":["NG"],"is_corresponding":false,"raw_author_name":"Sulaiman Olaniyi Abdulsalam","raw_affiliation_strings":["Department of Computer Science, Kwara State University, Malete 241104, Nigeria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Kwara State University, Malete 241104, Nigeria","institution_ids":["https://openalex.org/I98243723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072521808","display_name":"Rafiu Mope Isiaka","orcid":null},"institutions":[{"id":"https://openalex.org/I98243723","display_name":"Kwara State University","ror":"https://ror.org/05np2xn95","country_code":"NG","type":"education","lineage":["https://openalex.org/I98243723"]}],"countries":["NG"],"is_corresponding":false,"raw_author_name":"Rafiu Mope Isiaka","raw_affiliation_strings":["Department of Computer Science, Kwara State University, Malete 241104, Nigeria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Kwara State University, Malete 241104, Nigeria","institution_ids":["https://openalex.org/I98243723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038809283","display_name":"Kingsley Theophilus Igulu","orcid":"https://orcid.org/0000-0003-0512-7089"},"institutions":[{"id":"https://openalex.org/I3129613971","display_name":"Kwara State Polytechnic","ror":"https://ror.org/02ar7jm50","country_code":"NG","type":"education","lineage":["https://openalex.org/I3129613971"]},{"id":"https://openalex.org/I4405260148","display_name":"Kenule Beeson Saro-Wiwa Polytechnic, Bori","ror":"https://ror.org/03ay2mw04","country_code":"NG","type":"education","lineage":["https://openalex.org/I4405260148"]}],"countries":["NG"],"is_corresponding":false,"raw_author_name":"Kingsley Theophilus Igulu","raw_affiliation_strings":["Department of Computer Science, Kenule Beeson Saro-Wiwa Polytechnic, Bori 502101, Nigeria"],"raw_orcid":"https://orcid.org/0000-0003-0512-7089","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Kenule Beeson Saro-Wiwa Polytechnic, Bori 502101, Nigeria","institution_ids":["https://openalex.org/I3129613971","https://openalex.org/I4405260148"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001717827","display_name":"Bukola Fatimah Balogun","orcid":"https://orcid.org/0009-0009-7069-4208"},"institutions":[{"id":"https://openalex.org/I66943878","display_name":"De Montfort University","ror":"https://ror.org/0312pnr83","country_code":"GB","type":"education","lineage":["https://openalex.org/I66943878"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Bukola Fatimah Balogun","raw_affiliation_strings":["School of Computer Science and Informatics, Demontfort University, Leicester LE1 9BH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Informatics, Demontfort University, Leicester LE1 9BH, UK","institution_ids":["https://openalex.org/I66943878"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060329217","display_name":"Mihail Popescu","orcid":"https://orcid.org/0000-0002-6145-8096"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mihail Popescu","raw_affiliation_strings":["Department of Biomedical Informatics, Biostatistics and Medical Epidemiology, School of Medicine, University of Missouri, Columbia, MO 65211, USA","Institute for Data Science and Informatics, University of Missouri, Columbia, MO 65211, USA"],"raw_orcid":"https://orcid.org/0000-0002-6145-8096","affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Biostatistics and Medical Epidemiology, School of Medicine, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Institute for Data Science and Informatics, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082428303","display_name":"Dong Xu","orcid":"https://orcid.org/0000-0002-4809-0514"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I98243723","display_name":"Kwara State University","ror":"https://ror.org/05np2xn95","country_code":"NG","type":"education","lineage":["https://openalex.org/I98243723"]}],"countries":["NG","US"],"is_corresponding":false,"raw_author_name":"Dong Xu","raw_affiliation_strings":["Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA","Department of Computer Science, Kwara State University, Malete 241104, Nigeria","Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA","Institute for Data Science and Informatics, University of Missouri, Columbia, MO 65211, USA"],"raw_orcid":"https://orcid.org/0000-0002-4809-0514","affiliations":[{"raw_affiliation_string":"Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Department of Computer Science, Kwara State University, Malete 241104, Nigeria","institution_ids":["https://openalex.org/I98243723"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Institute for Data Science and Informatics, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5022507170"],"corresponding_institution_ids":["https://openalex.org/I169251466"],"apc_list":{"value":1600,"currency":"CHF","value_usd":1782},"apc_paid":{"value":1600,"currency":"CHF","value_usd":1782},"fwci":0.8435,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.73032618,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"18","issue":"9","first_page":"545","last_page":"545"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9753000140190125,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9196000099182129,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pi3k/akt/mtor-pathway","display_name":"PI3K/AKT/mTOR pathway","score":0.7148333787918091},{"id":"https://openalex.org/keywords/deregulation","display_name":"Deregulation","score":0.6748263239860535},{"id":"https://openalex.org/keywords/protein-kinase-b","display_name":"Protein kinase B","score":0.5871642827987671},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.5349041223526001},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4415295720100403},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4339578151702881},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.3402220606803894},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.3238871693611145},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.29379117488861084},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2915807366371155},{"id":"https://openalex.org/keywords/signal-transduction","display_name":"Signal transduction","score":0.2804092764854431},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1814233362674713},{"id":"https://openalex.org/keywords/economics","display_name":"Economics","score":0.17453527450561523}],"concepts":[{"id":"https://openalex.org/C86554907","wikidata":"https://www.wikidata.org/wiki/Q285613","display_name":"PI3K/AKT/mTOR pathway","level":3,"score":0.7148333787918091},{"id":"https://openalex.org/C78780426","wikidata":"https://www.wikidata.org/wiki/Q902410","display_name":"Deregulation","level":2,"score":0.6748263239860535},{"id":"https://openalex.org/C75217442","wikidata":"https://www.wikidata.org/wiki/Q423650","display_name":"Protein kinase B","level":3,"score":0.5871642827987671},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.5349041223526001},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4415295720100403},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4339578151702881},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.3402220606803894},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3238871693611145},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.29379117488861084},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2915807366371155},{"id":"https://openalex.org/C62478195","wikidata":"https://www.wikidata.org/wiki/Q828130","display_name":"Signal transduction","level":2,"score":0.2804092764854431},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1814233362674713},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.17453527450561523},{"id":"https://openalex.org/C139719470","wikidata":"https://www.wikidata.org/wiki/Q39680","display_name":"Macroeconomics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3390/a18090545","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a18090545","pdf_url":"https://www.mdpi.com/1999-4893/18/9/545/pdf?version=1756549939","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:fac3381383914009ab96b2ad116ff80c","is_oa":true,"landing_page_url":"https://doaj.org/article/fac3381383914009ab96b2ad116ff80c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms, Vol 18, Iss 9, p 545 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/a18090545","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a18090545","pdf_url":"https://www.mdpi.com/1999-4893/18/9/545/pdf?version=1756549939","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4413930158.pdf","grobid_xml":"https://content.openalex.org/works/W4413930158.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W2146512944","https://openalex.org/W2170776626","https://openalex.org/W2564318420","https://openalex.org/W2900099657","https://openalex.org/W3013381886","https://openalex.org/W3088017652","https://openalex.org/W3088521497","https://openalex.org/W3184178781","https://openalex.org/W3191302681","https://openalex.org/W4200307603","https://openalex.org/W4206956476","https://openalex.org/W4212894025","https://openalex.org/W4310857078","https://openalex.org/W4378672938","https://openalex.org/W4391107757","https://openalex.org/W4392923774","https://openalex.org/W4394934376","https://openalex.org/W4399212077","https://openalex.org/W4399808796","https://openalex.org/W4400161844","https://openalex.org/W4400392626","https://openalex.org/W4400438771","https://openalex.org/W4400465555","https://openalex.org/W4401016738","https://openalex.org/W4403163174","https://openalex.org/W4406320500","https://openalex.org/W4407204088","https://openalex.org/W4407956434","https://openalex.org/W4408164096","https://openalex.org/W4408386808"],"related_works":["https://openalex.org/W260768072","https://openalex.org/W3183179750","https://openalex.org/W2024933597","https://openalex.org/W2070783513","https://openalex.org/W3116479654","https://openalex.org/W4205189596","https://openalex.org/W2916964185","https://openalex.org/W2422815049","https://openalex.org/W2982360817","https://openalex.org/W1861328414"],"abstract_inverted_index":{"The":[0,186],"phosphoinositide":[1],"3-kinase":[2],"(PI3K)/AKT":[3],"signaling":[4],"pathway":[5],"is":[6,17],"a":[7,207,233],"crucial":[8],"regulator":[9],"of":[10,82,99,115,197],"cellular":[11],"metabolism,":[12],"proliferation,":[13],"and":[14,23,44,67,76,107,124,133,152,162,178,189,201,219,240],"survival.":[15],"It":[16],"frequently":[18],"dysregulated":[19],"in":[20,29,118,149,155,159],"metabolic,":[21],"cardiovascular,":[22],"neoplastic":[24],"disorders.":[25],"Despite":[26],"the":[27,80,92,97,113],"advancements":[28],"multi-omics":[30,198,215],"technology,":[31],"existing":[32],"methods":[33],"often":[34],"fail":[35],"to":[36,70,87,111,135,183,224],"provide":[37,225],"real-time,":[38],"pathway-specific":[39],"insights":[40,227],"for":[41,104,210,236],"precision":[42,211],"medicine":[43,212],"drug":[45,105,172],"repurposing.":[46],"We":[47],"offer":[48],"Agentic":[49],"RAG-Driven":[50],"Multi-Omics":[51],"Analysis":[52],"(ARMOA),":[53],"an":[54],"autonomous,":[55],"hypothesis-driven":[56],"system":[57],"that":[58,167],"integrates":[59],"retrieval-augmented":[60],"generation":[61],"(RAG),":[62],"large":[63],"language":[64],"models":[65],"(LLMs),":[66],"agentic":[68],"AI":[69,220],"thoroughly":[71],"analyze":[72],"genomic,":[73],"transcriptomic,":[74],"proteomic,":[75],"metabolomic":[77],"data.":[78],"Through":[79,139],"use":[81,196],"graph":[83],"neural":[84],"networks":[85],"(GNNs)":[86],"model":[88],"complex":[89],"interactions":[90],"within":[91],"PI3K/AKT":[93,116],"pathway,":[94],"ARMOA":[95,121,168,205],"enables":[96],"discovery":[98],"novel":[100],"biomarkers,":[101],"probable":[102],"candidates":[103],"repurposing,":[106],"customized":[108],"therapy":[109],"responses":[110],"address":[112],"complexities":[114],"dysregulation":[117],"disease":[119],"states.":[120],"dynamically":[122],"gathers":[123],"synthesizes":[125],"knowledge":[126],"from":[127],"multiple":[128],"sources,":[129],"including":[130],"KEGG,":[131],"TCGA,":[132],"DrugBank,":[134],"guarantee":[136],"context-aware":[137],"insights.":[138],"adaptive":[140],"reasoning,":[141],"it":[142,232],"gradually":[143],"enhances":[144],"predictions,":[145],"achieving":[146],"91%":[147],"accuracy":[148,154],"external":[150],"testing":[151],"92%":[153],"cross-validation.":[156],"Case":[157],"studies":[158],"breast":[160],"cancer":[161],"type":[163],"2":[164],"diabetes":[165],"demonstrate":[166],"can":[169],"identify":[170],"synergistic":[171],"combinations":[173],"with":[174],"high":[175],"clinical":[176,217],"relevance":[177],"predict":[179],"therapeutic":[180],"outcomes":[181],"specific":[182],"each":[184],"patient.":[185],"framework\u2019s":[187],"interpretability":[188],"scalability":[190],"are":[191],"greatly":[192],"enhanced":[193],"by":[194,213],"its":[195,229],"data":[199],"fusion":[200],"real-time":[202],"hypothesis":[203],"creation.":[204],"provides":[206],"cutting-edge":[208],"example":[209],"integrating":[214],"data,":[216],"judgment,":[218],"agents.":[221],"Its":[222],"ability":[223],"valuable":[226],"on":[228],"own":[230],"makes":[231],"powerful":[234],"tool":[235],"advancing":[237],"biomedical":[238],"research":[239],"treatment":[241],"development.":[242]},"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
