{"id":"https://openalex.org/W4393716706","doi":"https://doi.org/10.3390/a17040149","title":"A New Algorithm for Detecting GPN Protein Expression and Overexpression of IDC and ILC Her2+ Subtypes on Polyacrylamide Gels Associated with Breast Cancer","display_name":"A New Algorithm for Detecting GPN Protein Expression and Overexpression of IDC and ILC Her2+ Subtypes on Polyacrylamide Gels Associated with Breast Cancer","publication_year":2024,"publication_date":"2024-04-02","ids":{"openalex":"https://openalex.org/W4393716706","doi":"https://doi.org/10.3390/a17040149"},"language":"en","primary_location":{"id":"doi:10.3390/a17040149","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a17040149","pdf_url":"https://www.mdpi.com/1999-4893/17/4/149/pdf?version=1712048731","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1999-4893/17/4/149/pdf?version=1712048731","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059238539","display_name":"Jorge Ju\u00e1rez-Lucero","orcid":"https://orcid.org/0000-0001-7269-7677"},"institutions":[{"id":"https://openalex.org/I39824353","display_name":"National Institute of Astrophysics, Optics and Electronics","ror":"https://ror.org/00bpmmc63","country_code":"MX","type":"facility","lineage":["https://openalex.org/I39824353"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Jorge Juarez-Lucero","raw_affiliation_strings":["Instituto Nacional de Astrofisica Optica y Electronica, Luis Enrique Erro # 1, Tonantzintla, Puebla 72840, Mexico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto Nacional de Astrofisica Optica y Electronica, Luis Enrique Erro # 1, Tonantzintla, Puebla 72840, Mexico","institution_ids":["https://openalex.org/I39824353"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046009111","display_name":"Mar\u00eda del Rayo Graciela Guevara-Villa","orcid":"https://orcid.org/0000-0003-2368-5316"},"institutions":[{"id":"https://openalex.org/I721619","display_name":"Benem\u00e9rita Universidad Aut\u00f3noma de Puebla","ror":"https://ror.org/03p2z7827","country_code":"MX","type":"education","lineage":["https://openalex.org/I721619"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Maria Guevara-Villa","raw_affiliation_strings":["Faculty of Architecture, Meritorious Autonomous University of Puebla, 4 Sur 104 Centro Hist\u00f3rico, Puebla 72000, Mexico"],"raw_orcid":"https://orcid.org/0000-0003-2368-5316","affiliations":[{"raw_affiliation_string":"Faculty of Architecture, Meritorious Autonomous University of Puebla, 4 Sur 104 Centro Hist\u00f3rico, Puebla 72000, Mexico","institution_ids":["https://openalex.org/I721619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103030165","display_name":"Anabel S\u00e1nchez-S\u00e1nchez","orcid":"https://orcid.org/0000-0001-9419-9361"},"institutions":[{"id":"https://openalex.org/I39824353","display_name":"National Institute of Astrophysics, Optics and Electronics","ror":"https://ror.org/00bpmmc63","country_code":"MX","type":"facility","lineage":["https://openalex.org/I39824353"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"Anabel Sanchez-Sanchez","raw_affiliation_strings":["Instituto Nacional de Astrofisica Optica y Electronica, Luis Enrique Erro # 1, Tonantzintla, Puebla 72840, Mexico"],"raw_orcid":"https://orcid.org/0000-0001-9419-9361","affiliations":[{"raw_affiliation_string":"Instituto Nacional de Astrofisica Optica y Electronica, Luis Enrique Erro # 1, Tonantzintla, Puebla 72840, Mexico","institution_ids":["https://openalex.org/I39824353"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114374557","display_name":"R. D\u00edaz Hern\u00e1ndez","orcid":"https://orcid.org/0000-0001-8487-0836"},"institutions":[{"id":"https://openalex.org/I39824353","display_name":"National Institute of Astrophysics, Optics and Electronics","ror":"https://ror.org/00bpmmc63","country_code":"MX","type":"facility","lineage":["https://openalex.org/I39824353"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Raquel Diaz-Hernandez","raw_affiliation_strings":["Instituto Nacional de Astrofisica Optica y Electronica, Luis Enrique Erro # 1, Tonantzintla, Puebla 72840, Mexico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto Nacional de Astrofisica Optica y Electronica, Luis Enrique Erro # 1, Tonantzintla, Puebla 72840, Mexico","institution_ids":["https://openalex.org/I39824353"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082483792","display_name":"Leopoldo Altamirano-Robles","orcid":"https://orcid.org/0000-0003-0965-6420"},"institutions":[{"id":"https://openalex.org/I39824353","display_name":"National Institute of Astrophysics, Optics and Electronics","ror":"https://ror.org/00bpmmc63","country_code":"MX","type":"facility","lineage":["https://openalex.org/I39824353"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Leopoldo Altamirano-Robles","raw_affiliation_strings":["Instituto Nacional de Astrofisica Optica y Electronica, Luis Enrique Erro # 1, Tonantzintla, Puebla 72840, Mexico"],"raw_orcid":"https://orcid.org/0000-0003-0965-6420","affiliations":[{"raw_affiliation_string":"Instituto Nacional de Astrofisica Optica y Electronica, Luis Enrique Erro # 1, Tonantzintla, Puebla 72840, Mexico","institution_ids":["https://openalex.org/I39824353"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5103030165"],"corresponding_institution_ids":["https://openalex.org/I39824353"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1782},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1782},"fwci":0.7905,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.73051793,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"17","issue":"4","first_page":"149","last_page":"149"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13199","display_name":"Digestive system and related health","score":0.9311000108718872,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13199","display_name":"Digestive system and related health","score":0.9311000108718872,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10336","display_name":"Cancer Cells and Metastasis","score":0.9232000112533569,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5162713527679443},{"id":"https://openalex.org/keywords/protein-expression","display_name":"Protein expression","score":0.49342456459999084},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.4716341197490692},{"id":"https://openalex.org/keywords/polyacrylamide","display_name":"Polyacrylamide","score":0.4630447030067444},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4592767357826233},{"id":"https://openalex.org/keywords/polyacrylamide-gel-electrophoresis","display_name":"Polyacrylamide gel electrophoresis","score":0.45784348249435425},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4415940046310425},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4024469256401062},{"id":"https://openalex.org/keywords/molecular-biology","display_name":"Molecular biology","score":0.38707655668258667},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.3825058341026306},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32771432399749756},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16566309332847595},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11539945006370544},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11341279745101929},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.07512718439102173}],"concepts":[{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5162713527679443},{"id":"https://openalex.org/C6856738","wikidata":"https://www.wikidata.org/wiki/Q331672","display_name":"Protein expression","level":3,"score":0.49342456459999084},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.4716341197490692},{"id":"https://openalex.org/C2778862431","wikidata":"https://www.wikidata.org/wiki/Q416002","display_name":"Polyacrylamide","level":2,"score":0.4630447030067444},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4592767357826233},{"id":"https://openalex.org/C101660505","wikidata":"https://www.wikidata.org/wiki/Q898301","display_name":"Polyacrylamide gel electrophoresis","level":3,"score":0.45784348249435425},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4415940046310425},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4024469256401062},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.38707655668258667},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.3825058341026306},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32771432399749756},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16566309332847595},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11539945006370544},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11341279745101929},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.07512718439102173},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3390/a17040149","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a17040149","pdf_url":"https://www.mdpi.com/1999-4893/17/4/149/pdf?version=1712048731","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:044510d1f0d5430fbce36a0ba270e324","is_oa":false,"landing_page_url":"https://doaj.org/article/044510d1f0d5430fbce36a0ba270e324","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms, Vol 17, Iss 4, p 149 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/a17040149","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a17040149","pdf_url":"https://www.mdpi.com/1999-4893/17/4/149/pdf?version=1712048731","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.6899999976158142}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4393716706.pdf"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W62009104","https://openalex.org/W1913511083","https://openalex.org/W1975810687","https://openalex.org/W1979542564","https://openalex.org/W1990734057","https://openalex.org/W2011211217","https://openalex.org/W2020883978","https://openalex.org/W2063150961","https://openalex.org/W2075934392","https://openalex.org/W2090495833","https://openalex.org/W2098812600","https://openalex.org/W2112617323","https://openalex.org/W2130431580","https://openalex.org/W2133047124","https://openalex.org/W2160693392","https://openalex.org/W2161586009","https://openalex.org/W2178979841","https://openalex.org/W2194391224","https://openalex.org/W2293218418","https://openalex.org/W2475359594","https://openalex.org/W2754623386","https://openalex.org/W2790566800","https://openalex.org/W2799556914","https://openalex.org/W2914439571","https://openalex.org/W2925124856","https://openalex.org/W2969472550","https://openalex.org/W2997523705","https://openalex.org/W3123656230","https://openalex.org/W4283704041","https://openalex.org/W6602456681","https://openalex.org/W6639924487","https://openalex.org/W6648328578","https://openalex.org/W6744418481","https://openalex.org/W6750854304"],"related_works":["https://openalex.org/W1992767767","https://openalex.org/W2437372836","https://openalex.org/W2378901776","https://openalex.org/W2023096684","https://openalex.org/W2112343940","https://openalex.org/W572781277","https://openalex.org/W3108123878","https://openalex.org/W2029964683","https://openalex.org/W4242488845","https://openalex.org/W2010817878"],"abstract_inverted_index":{"Sodium":[0],"dodecyl":[1],"sulfate\u2013polyacrylamide":[2],"gel":[3,67,148],"electrophoresis":[4],"(SDS-PAGE)":[5],"is":[6,19,76,112],"used":[7],"to":[8,57,89,139],"identify":[9,58,140],"protein":[10,45,75,86,156],"presence,":[11],"absence,":[12],"or":[13,48],"overexpression":[14],"and":[15,68,124,149,175],"usually,":[16],"their":[17],"interpretation":[18],"visual.":[20],"Some":[21],"published":[22],"methods":[23],"can":[24],"localize":[25],"the":[26,59,69,73,99,116,121,126,141,150,154],"position":[27],"of":[28,35,61,72,80,83,120,128,143,153,157,162,164,168,180],"proteins":[29],"using":[30,98],"image":[31],"analysis":[32],"on":[33,106,114],"images":[34,79,95,129],"SDS-PAGE":[36,66,78,147],"gels.":[37,92],"However,":[38],"they":[39],"cannot":[40],"automatically":[41],"determine":[42],"a":[43,54,132,160],"particular":[44],"band\u2019s":[46],"concentration":[47],"molecular":[49,70,151],"weight.":[50],"In":[51],"this":[52],"article,":[53],"new":[55],"methodology":[56,101],"number":[60,142],"samples":[62,144],"present":[63],"in":[64,145],"an":[65,146],"weight":[71,152],"recombinant":[74,155],"developed.":[77],"different":[81],"concentrations":[82],"pure":[84],"GPN":[85],"were":[87,96],"created":[88],"produce":[90],"homogeneous":[91,173],"Then,":[93],"these":[94],"analyzed":[97,122],"developed":[100,138],"called":[102],"Image":[103,108],"Profile":[104],"Based":[105],"Binarized":[107],"Segmentation":[109],"(IPBBIS).":[110],"It":[111],"based":[113],"detecting":[115],"maximum":[117],"intensity":[118],"values":[119],"bands":[123],"produces":[125],"segmentation":[127],"filtered":[130],"by":[131],"binary":[133],"mask.":[134],"The":[135],"IPBBIS":[136],"was":[137,170],"interest,":[158],"with":[159],"margin":[161],"error":[163],"3.35%.":[165],"An":[166],"accuracy":[167],"0.9850521":[169],"achieved":[171],"for":[172,177],"gels":[174,179],"0.91736":[176],"heterogeneous":[178],"low":[181],"quality.":[182]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
